Macromolecular Assemblies from Co-Elution Profile (MACP)

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Documentation for package ‘MACP’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

calculate_PPIscore	Calculate Pairwise Protein Profile Similarity using Different Metrics
cluster_tuning	ClusterONE Hyperparameters Tuning
Clust_Valid	Cluster Evaluation by External Measures
data_filtering	Data Filtering
EliminateCpxRedundance	Hierarchical Clustering of Modules
enrichmentCPX	Functional Enrichment Analysis for Predicted Complexes
ensemble_model	Predict Interactions via Ensemble Learning Method
exampleData	Demo CF-MS data
generate_refInt	Generate Class Labels for Data Input Based on Gold Reference Set
getCPX	Fetch Complexes from the CORUM Database
get_clusters	Predict Complexes
get_DenoisedNet	Denoising Predicted Protein-Protein Interactions
impute_MissingData	Impute missing Values in Elution Profile Matrix
keepMT	Keep Mitochondrial (mt) Proteins
MCL_clustering	MCL clustering
MCL_tuning	MCL Hyperparameters Tuning
orthMappingCpx	Protein Complex Ortholog Mapping
predPPI_MACP	Predict Protein-Protein Interactions and Putative Complexes
refcpx	CORUM reference complexes
scaling	Column and Row-wise Normalization
subcellular.mtPPI	Keep Mitochondrial (mt) Proteins