A Biomarker Validation Approach for Classification and Predicting Survival Using Metabolomics Signature

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Documentation for package ‘MetabolicSurv’ version 1.1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

CVLasoelacox	Cross Validations for Lasso Elastic Net Survival predictive models and Classification
cvle	Constructor for the cvle class
cvle-class	The cvle Class.
CVMajorityvotes	Cross validation for majority votes
CVMetSpecificCoxPh	Cross validation for the Metabolite specific analysis
cvmm	Constructor for the cvmm class
cvmm-class	The cvmm Class.
cvmv	Constructor for the cvmv class
cvmv-class	The cvmv Class.
CVPcaPls	Cross Validations for PCA and PLS based methods
cvpp	Constructor for the cvpp class
cvpp-class	The cvpp Class.
cvsim	Constructor for the cvsim class
cvsim-class	The cvsim Class.
CVSimet	Cross validation for sequentially increases metabolites
DataHR	Survival and Prognostic Data .
DistHR	Null Distribution of the Estimated HR
EstimateHR	Classification, Survival Estimation and Visualization
fcv	Constructor for the fcv class
fcv-class	The fcv Class.
Icvlasoel	Inner and Outer Cross Validations for Lasso Elastic Net Survival predictive models and Classification
Lasoelacox	Wapper function for glmnet
Majorityvotes	Classifiction for Majority Votes
MetabolicSurv	MetabolicSurv: A biomarker validation approach for predicting survival using metabolic signature.
MetFreq	Frequency of Selected Metabolites from the LASSO, Elastic-net Cross-Validation
ms	The ms class
MSData	Generate Artificial Metabolic Survival Data
MSpecificCoxPh	Metabolite by metabolite Cox proportional analysis
perm	Constructor for the perm class
perm-class	The perm Class.
plot-method	Plot method for cvle class
plot-method	Plot method for cvmm class
plot-method	Plot method for cvmv class
plot-method	Plot method for cvpp class
plot-method	Plot method for cvsim class
plot-method	Plot method for fcv class
plot-method	Plot method for ms class
plot-method	Plot method for perm class
show-method	Show method for cvle class
show-method	Show method for cvmm class
show-method	Show method for cvmv class
show-method	Show method for cvpp class
show-method	Show method for cvsim class
show-method	Show method for fcv class
show-method	Show method for ms class
show-method	Show method for perm class
SIMet	Sequential Increase in Metabolites for the PCA or PLS classifier
summary-method	Summary method for cvle class
summary-method	Summary method for cvmm class
summary-method	Summary method for cvmv class
summary-method	Summary method for cvpp class
summary-method	Summary method for cvsim class
summary-method	Summary method for fcv class
summary-method	Summary method for ms class
summary-method	Summary method for perm class
SurvPcaClass	Survival PCA and Classification for metabolic data
SurvPlsClass	Survival PLS and Classification for metabolic data