calculateApexMaxBoundaryRatio | Calculate Apex-Max Boundary Ratio (of a Chromatographic Peak) |
calculateElutionShift | Calculate Elution Shift (of a Peak Group) |
calculateEvaluationMeasures | Calculate Evaluation Measures |
calculateFWHM | Calculate FWHM2Base (of a Chromatographic Peak) |
calculateGaussianSimilarity | Calculate Gaussian Similarity (of a Chromatographic Peak) |
calculateJaggedness | Calculate Jaggedness (of a Chromatographic Peak) |
calculateModality | Calculate Modality (of a Chromatographic Peak) |
calculateRetentionTimeConsistency | Calculate Retention Time Consistency (of a Peak Group) |
calculateSharpness | Calculate Sharpness (of a Chromatographic Peak) |
calculateSymmetry | Calculate Symmetry (of a Chromatographic Peak) |
calculateTPASR | Calcualte Triangle Peak Area Similarity Ratio (TPASR) (of a Chromatographic Peak) |
calculateZigZagIndex | Calculate the Zig-Zag Index (of a Chromatographic Peak) |
evalObj | A custom class for storing the chromatographic peak data required by the peak metric functions for each group of samples. |
evalObj-class | A custom class for storing the chromatographic peak data required by the peak metric functions for each group of samples. |
ex_peakData | Example peakData - value input to calculate... functions (except calculateElutionShift and calculateRetentionTimeConsistency) |
ex_peakDataList | Example peakDataList - value input to calculteElutionShift and calculateRetentionTimeConsistency |
ex_pts | Example pts - value input to caculate... functions (except calculateElutionShift and calculateRetentionTimeConsistency) |
ex_ptsList | Example ptsList - value input to calculteElutionShift and calculateRetentionTimeConsistency |
getBarPlots | Generate Bar Plots for the Seven Evaluation Measures |
getEvalObj | Extract peak data object |
getEvaluationMeasures | Calculate Evaluation Measures |
getPeakQualityMetrics | Calculate the 12 Peak Quality Metrics |
getPredicitons | Get MetaClean Predictions |
pqm_development | Example Peak Quality Metrics Data Frame for Development Dataset. |
pqm_test | Example Peak Quality Metrics Data Frame for Test Dataset. |
rsdFilter | RSD Filteirng |
runCrossValidation | Run Cross-Validation for A List of Algoirthms with Peak Quality Metric Feature Sets |
summaryStats | Calculate summary statistics for evaluation measures |
trainClassifier | Train MetaClean Classifier |