Visualize the Basic Characteristics of Single-Cell Immune Repertoire


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Documentation for package ‘scImmuneGraph’ version 1.1.3

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BasicPlot Draw a variety of diagrams
bcontig_list Single chain immune repertoire dataset
BCR.CDR3ntLengthDistribution CDR3 nucleic acid length distribution in the sample
BCR.ClonalStateDistribution Distribution of clonal status of single-cell BCR clonotypes
BCR.ClonotypeComposition The composition of single-cell BCR clonotypes in the sample
BCR.ContigList Converting 10X genomics produced B cell contigs file(s) as a list outputed
BCR.JgeneAbundance J gene abundance distribution in the sample
BCR.top100CDR3Abundance #' Get the 100 most abundant CDR3
BCR.top100ClonotypeAbundance Get the 100 most abundant clonotypes
BCR.VgeneAbundance V gene abundance distribution in the sample
BCR.VJgenePair VJ gene pair abundance distribution in the sample
tcontig_list Single chain immune repertoire dataset
TCR.CDR3ntLengthDistribution CDR3 nucleic acid length distribution in the sample
TCR.ClonalStateDistribution Distribution of clonal status of single-cell TCR clonotypes
TCR.ClonotypeComposition The composition of single-cell TCR clonotypes in the sample
TCR.ContigList Converting 10X genomics produced T cell contigs file(s) as a list outputed
TCR.JgeneAbundance J gene abundance distribution in the sample
TCR.top100CDR3Abundance #' Get the 100 most abundant CDR3
TCR.top100ClonotypeAbundance Get the 100 most abundant clonotypes
TCR.VgeneAbundance V gene abundance distribution in the sample
TCR.VJgenePair VJ gene pair abundance distribution in the sample