Tidy, 'ggplot2'-Native Visualization for Genomic Variants
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘ggvariant’ version 0.2.0
Help Pages
| ggvariant-package | ggvariant: Tidy, ggplot2-Native Visualization for Genomic Variants |
| coerce_variants | Coerce a plain data frame to a 'gvf' object |
| ggvariant | ggvariant: Tidy, ggplot2-Native Visualization for Genomic Variants |
| gvf-methods | Print and summarise 'gvf' objects |
| gv_palette | ggvariant colour palettes |
| plot_consequence_summary | Consequence summary bar chart |
| plot_lollipop | Lollipop plot of variants along a gene |
| plot_oncoprint | Oncoprint / waterfall plot of variants across samples |
| plot_tmb | Tumour mutational burden bar chart |
| plot_variant_spectrum | Mutational spectrum (SBS) bar chart |
| plot_waterfall | Oncoprint / waterfall plot of variants across samples |
| print.gvf | Print and summarise 'gvf' objects |
| print.summary.gvf | Print and summarise 'gvf' objects |
| read_vcf | Read a VCF file into a tidy variant data frame |
| summary.gvf | Print and summarise 'gvf' objects |
| theme_ggvariant | ggvariant ggplot2 theme |