# REST API Client for the 'PGS' Catalog

## Documentation for package ‘quincunx’ version 0.2.0

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

ancestry_categories | Ancestry categories and classes
bind | Bind PGS Catalog objects
clear_cache | Clear quincunx cache of memoised functions
cohorts-class | An S4 class to represent a set of cohorts
get_ancestry_categories | Get ancestry categories and classes
get_cohorts | Get PGS Catalog Cohorts
get_performance_metrics | Get PGS Catalog Performance Metrics
get_publications | Get PGS Catalog Publications
get_releases | Get PGS Catalog Releases
get_sample_sets | Get PGS Catalog Sample Sets
get_scores | Get PGS Catalog Scores
get_traits | Get PGS Catalog Traits
get_trait_categories | Get PGS Catalog Trait Categories
intersect | Set operations on PGS Catalog objects
n | Number of PGS Catalog entities
n-method | Number of PGS Catalog entities
open_in_dbsnp | Browse dbSNP from SNP identifiers.
open_in_pgs_catalog | Browse PGS Catalog entities from the PGS Catalog Web Graphical User Interface
open_in_pubmed | Browse PubMed from PubMed identifiers.
performance_metrics-class | An S4 class to represent a set of PGS Catalog Performance Metrics
pgp_to_pgs | Map PGP identifiers to PGS identifiers
pgp_to_ppm | Map PGP identifiers to PPM identifiers
pgp_to_pss | Map PGP identifiers to PSS identifiers
pgs_to_pgp | Map PGS identifiers to PGP identifiers
pgs_to_ppm | Map PGS identifiers to PPM identifiers
pgs_to_pss | Map PGS identifiers to PSS identifiers
pgs_to_study | Map PGS identifiers to GWAS study identifiers
ppm_to_pgp | Map PPM identifiers to PGP identifiers
ppm_to_pgs | Map PPM identifiers to PGS identifiers
ppm_to_pss | Map PPM identifiers to PSS identifiers
pss_to_pgp | Map PSS identifiers to PGP identifiers
pss_to_pgs | Map PSS identifiers to PGS identifiers
pss_to_ppm | Map PSS identifiers to PPM identifiers
publications-class | An S4 class to represent a set of PGS Catalog Publications
read_scoring_file | Read a polygenic scoring file
releases-class | An S4 class to represent a set of PGS Catalog Releases
sample_sets-class | An S4 class to represent a set of PGS Catalog Sample Sets
scores-class | An S4 class to represent a set of PGS Catalog Polygenic Scores
setdiff | Set operations on PGS Catalog objects
setequal | Set operations on PGS Catalog objects
setop | Set operations on PGS Catalog objects
stages | Study stages
study_to_pgs | Map GWAS studies identifiers to PGS identifiers
traits-class | An S4 class to represent a set of PGS Catalog Traits
trait_categories-class | An S4 class to represent a set of PGS Catalog Trait Categories
union | Set operations on PGS Catalog objects
write_xlsx | Export a PGS Catalog object to xlsx