27ad76885b3182a354c007334291c127 *DESCRIPTION
81d727df22c1b471806ab5ccce07744e *LICENSE
00783d0db007fc600cc6f1b91b0d8e0f *NAMESPACE
aaf3577fe10cc5db51a4fc45ce0c235d *NEWS.md
3ea333bc4b59233af65e2183ecc92bb6 *R/ggvariant-package.R
c07934f3f5654c9f9946d514ef0c7aff *R/gvf-methods.R
f0d3c279c83b6f55d5d00094e9e24478 *R/plot_functions.R
f43271a1029ffe3e7926d8431ef69678 *R/plot_lollipop.R
91cec3acc3372b9047a95a1061427815 *R/plot_oncoprint.R
874542fe1560e351de1ffdd5ee8c987b *R/plot_tmb.R
3b2306d4c3dc7d05786e77a2e9431666 *R/read_vcf.R
1c6ed326eeda743cb134a512efbd572e *R/utils.R
8fd26c4db73cc38f884934b4753b0b1b *README.md
d54042561b90aafd8a9a202ea63e1e4b *build/partial.rdb
dcbb73d18d41cb972c50c2ec8b5b7d1f *build/vignette.rds
cea7ace3be02fb8eef956340455d25e2 *inst/CITATION
69931f9da8ed7153128761dd187f4682 *inst/REFERENCES.bib
1caba7b59b36d852ee1246f6f8420e64 *inst/doc/ggvariant.R
8f9120e30ffeb65983355f116c34f4d5 *inst/doc/ggvariant.Rmd
6107ed4422b759cd3bad08ea32e39e63 *inst/doc/ggvariant.html
bb8638a7e308b6e25de885f42558bf1b *inst/extdata/example.vcf
af6b453ad27be5b92c167f8f24ee344f *man/coerce_variants.Rd
58064c83a4804703e5f94939a9e78bf2 *man/figures/README-consequence-summary-1.png
115c6a3d8bfb3c46e44a5060a2e472d1 *man/figures/README-customise-1.png
a9b6b2c77d04c9811770de423583654c *man/figures/README-example-1.png
24627333865339fed9591d34f8ca3098 *man/figures/README-oncoprint-1.png
21a1e31e74188e41cf9613a8c08b4cb2 *man/figures/README-spectrum-1.png
755959cdf5bed50aad7e51fb3e4a130b *man/figures/logo.png
382d59b89d83f0f929cf82f0bd69f13d *man/ggvariant-package.Rd
2118b1ae608bcf77b026620f23cfde5e *man/gv_palette.Rd
3c3a4d36334692dbd70c7623aec2222f *man/gvf-methods.Rd
47f867a30bfb87048c76652597cf9c28 *man/plot_consequence_summary.Rd
78ca88e4d267984a1fc36d3e2d67f6ff *man/plot_lollipop.Rd
26b43fb945e79203ba9a393340e16bb3 *man/plot_oncoprint.Rd
6a0b184045dbf53608d05f516f9dfdca *man/plot_tmb.Rd
ea956d121bc6695bc0440a0cc9442e81 *man/plot_variant_spectrum.Rd
558b65892754ca510b022bda73d01427 *man/read_vcf.Rd
9006a6b00520bfd397e29c39e99c5f53 *man/theme_ggvariant.Rd
af82b725fdf5014523cad161617e29e1 *tests/testthat.R
e2da71eff5a0a96a7bf54adcbec32f0f *tests/testthat/_snaps/plot-consequence-summary/consequence-summary-default.svg
751c73e41e3b2e4c6a02c7049cbced4c *tests/testthat/_snaps/plot-lollipop/lollipop-tp53.svg
665509aec2e8327e1422453619bb4182 *tests/testthat/_snaps/plot-oncoprint/oncoprint-top5.svg
fe75dfd5719edbf9dfda197fef4d2c0c *tests/testthat/_snaps/plot-tmb/tmb-default.svg
8bf7524212ee8008456a97501cd33a69 *tests/testthat/_snaps/plot-variant-spectrum/variant-spectrum-default.svg
3217c0ceaca493d22aee8cc1d69c02e6 *tests/testthat/test-coerce-variants.R
5c6e2f9a9e22da02b2be03f5d7df033a *tests/testthat/test-core.R
432af8e634677a5c94e7a02622f79f1c *tests/testthat/test-gvf-methods.R
afeccdc25490e66e255c4091c89649ff *tests/testthat/test-parse-ann-csq.R
5c523a3bd57b305bc2273e8af3d5b370 *tests/testthat/test-pivot-samples-genotype.R
b3888a64a25834652a06d15388aa8f55 *tests/testthat/test-plot-consequence-summary.R
6e7b675fa5f39e875ced0794d5aa4876 *tests/testthat/test-plot-lollipop.R
45086cf6be22f478d9d10bdfe19fac7d *tests/testthat/test-plot-oncoprint.R
90f7b651a4c82099ffe0478d8453f797 *tests/testthat/test-plot-tmb.R
5aeb3028eab57b2b2595960fca2f8945 *tests/testthat/test-plot-variant-spectrum.R
8f3913bd590579e5f4f79a2193fdb638 *tests/testthat/test-read-vcf-malformed.R
0f8df78c9c1d73106267ff21a4aa3441 *tests/testthat/test-utils.R
8f9120e30ffeb65983355f116c34f4d5 *vignettes/ggvariant.Rmd
