Last updated on 2024-05-07 12:56:05 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.0 | 9.73 | 194.38 | 204.11 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.4.0 | 5.17 | 133.45 | 138.62 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.5.0 | 528.67 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.5.0 | 491.73 | OK | |||
| r-devel-windows-x86_64 | 0.4.0 | 8.00 | 130.00 | 138.00 | ERROR | |
| r-patched-linux-x86_64 | 0.4.0 | 4.99 | 179.46 | 184.45 | ERROR | |
| r-release-linux-x86_64 | 0.4.0 | 4.84 | 181.89 | 186.73 | ERROR | |
| r-release-macos-arm64 | 0.4.0 | 103.00 | OK | |||
| r-release-macos-x86_64 | 0.5.0 | 345.00 | OK | |||
| r-release-windows-x86_64 | 0.5.0 | 8.00 | 260.00 | 268.00 | OK | |
| r-oldrel-macos-arm64 | 0.4.0 | 102.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.5.0 | 328.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.4.0 | 10.00 | 171.00 | 181.00 | ERROR |
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [59s/49s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortSurvival)
>
> test_check("CohortSurvival")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 45 | PASS 1 ]
══ Skipped tests (45) ══════════════════════════════════════════════════════════
• On CRAN (45): 'test-benchmarkCohortSurvival.R:2:3',
'test-benchmarkCohortSurvival.R:63:3', 'test-addCohortSurvival.R:71:3',
'test-addCohortSurvival.R:158:3', 'test-addCohortSurvival.R:271:3',
'test-addCohortSurvival.R:377:3', 'test-addCohortSurvival.R:489:3',
'test-addCohortSurvival.R:567:3', 'test-addCohortSurvival.R:667:3',
'test-addCohortSurvival.R:753:3', 'test-generateDeathCohort.R:2:3',
'test-generateDeathCohort.R:62:3', 'test-generateDeathCohort.R:129:3',
'test-generateDeathCohort.R:195:3', 'test-generateDeathCohort.R:262:3',
'test-generateDeathCohort.R:351:3', 'test-generateDeathCohort.R:451:3',
'test-mockMGUS2cdm.R:2:3', 'test-plotSurvival.R:2:3',
'test-plotSurvival.R:19:3', 'test-plotSurvival.R:37:3',
'test-plotSurvival.R:57:3', 'test-plotSurvival.R:77:3',
'test-plotSurvival.R:98:3', 'test-plotSurvival.R:129:3',
'test-plotSurvival.R:149:3', 'test-tableSurvival.R:2:3',
'test-tableSurvival.R:51:3', 'test-estimateSurvival.R:88:3',
'test-estimateSurvival.R:127:3', 'test-estimateSurvival.R:177:3',
'test-estimateSurvival.R:344:3', 'test-estimateSurvival.R:557:3',
'test-estimateSurvival.R:708:3', 'test-estimateSurvival.R:1225:3',
'test-estimateSurvival.R:1351:3', 'test-estimateSurvival.R:1373:3',
'test-estimateSurvival.R:1408:3', 'test-estimateSurvival.R:1484:3',
'test-estimateSurvival.R:1676:3', 'test-estimateSurvival.R:1800:3',
'test-estimateSurvival.R:1830:3', 'test-estimateSurvival.R:1849:3',
'test-estimateSurvival.R:1883:3', 'test-estimateSurvival.R:2014:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-estimateSurvival.R:9:3'): mgus example: no Competing risk ──────
Error in `validateSummariseResult(x)`: ids are not unique in settings
Backtrace:
▆
1. ├─... %>% asSurvivalResult() at test-estimateSurvival.R:9:3
2. ├─CohortSurvival::asSurvivalResult(.)
3. │ └─omopgenerics::newSummarisedResult(result)
4. │ └─omopgenerics:::assertClass(x = x, class = "data.frame")
5. │ ├─base::paste0(...)
6. │ └─base::paste0(base::class(x), collapse = ", ")
7. └─CohortSurvival::estimateSingleEventSurvival(...)
8. └─omopgenerics::newSummarisedResult(surv_estimates)
9. └─omopgenerics:::validateSummariseResult(x)
10. └─cli::cli_abort("ids are not unique in settings")
11. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 45 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘a01_Single_event_of_interest.Rmd’ using rmarkdown
Quitting from lines at lines 47-54 [unnamed-chunk-5] (a01_Single_event_of_interest.Rmd)
Error: processing vignette 'a01_Single_event_of_interest.Rmd' failed with diagnostics:
ids are not unique in settings
--- failed re-building ‘a01_Single_event_of_interest.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘a02_Competing_risk_survival.Rmd’ using rmarkdown
Quitting from lines at lines 55-64 [unnamed-chunk-5] (a02_Competing_risk_survival.Rmd)
Error: processing vignette 'a02_Competing_risk_survival.Rmd' failed with diagnostics:
Can't rename columns that don't exist.
✖ Column `V2` doesn't exist.
--- failed re-building ‘a02_Competing_risk_survival.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
SUMMARY: processing the following files failed:
‘a01_Single_event_of_interest.Rmd’ ‘a02_Competing_risk_survival.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [40s/36s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortSurvival)
>
> test_check("CohortSurvival")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 45 | PASS 1 ]
══ Skipped tests (45) ══════════════════════════════════════════════════════════
• On CRAN (45): 'test-benchmarkCohortSurvival.R:2:3',
'test-benchmarkCohortSurvival.R:63:3', 'test-addCohortSurvival.R:71:3',
'test-addCohortSurvival.R:158:3', 'test-addCohortSurvival.R:271:3',
'test-addCohortSurvival.R:377:3', 'test-addCohortSurvival.R:489:3',
'test-addCohortSurvival.R:567:3', 'test-addCohortSurvival.R:667:3',
'test-addCohortSurvival.R:753:3', 'test-generateDeathCohort.R:2:3',
'test-generateDeathCohort.R:62:3', 'test-generateDeathCohort.R:129:3',
'test-generateDeathCohort.R:195:3', 'test-generateDeathCohort.R:262:3',
'test-generateDeathCohort.R:351:3', 'test-generateDeathCohort.R:451:3',
'test-mockMGUS2cdm.R:2:3', 'test-plotSurvival.R:2:3',
'test-plotSurvival.R:19:3', 'test-plotSurvival.R:37:3',
'test-plotSurvival.R:57:3', 'test-plotSurvival.R:77:3',
'test-plotSurvival.R:98:3', 'test-plotSurvival.R:129:3',
'test-plotSurvival.R:149:3', 'test-tableSurvival.R:2:3',
'test-tableSurvival.R:51:3', 'test-estimateSurvival.R:88:3',
'test-estimateSurvival.R:127:3', 'test-estimateSurvival.R:177:3',
'test-estimateSurvival.R:344:3', 'test-estimateSurvival.R:557:3',
'test-estimateSurvival.R:708:3', 'test-estimateSurvival.R:1225:3',
'test-estimateSurvival.R:1351:3', 'test-estimateSurvival.R:1373:3',
'test-estimateSurvival.R:1408:3', 'test-estimateSurvival.R:1484:3',
'test-estimateSurvival.R:1676:3', 'test-estimateSurvival.R:1800:3',
'test-estimateSurvival.R:1830:3', 'test-estimateSurvival.R:1849:3',
'test-estimateSurvival.R:1883:3', 'test-estimateSurvival.R:2014:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-estimateSurvival.R:9:3'): mgus example: no Competing risk ──────
Error in `validateSummariseResult(x)`: ids are not unique in settings
Backtrace:
▆
1. ├─... %>% asSurvivalResult() at test-estimateSurvival.R:9:3
2. ├─CohortSurvival::asSurvivalResult(.)
3. │ └─omopgenerics::newSummarisedResult(result)
4. │ └─omopgenerics:::assertClass(x = x, class = "data.frame")
5. │ ├─base::paste0(...)
6. │ └─base::paste0(base::class(x), collapse = ", ")
7. └─CohortSurvival::estimateSingleEventSurvival(...)
8. └─omopgenerics::newSummarisedResult(surv_estimates)
9. └─omopgenerics:::validateSummariseResult(x)
10. └─cli::cli_abort("ids are not unique in settings")
11. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 45 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.0
Check: tests
Result: ERROR
Running 'testthat.R' [25s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortSurvival)
>
> test_check("CohortSurvival")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 45 | PASS 1 ]
══ Skipped tests (45) ══════════════════════════════════════════════════════════
• On CRAN (45): 'test-benchmarkCohortSurvival.R:2:3',
'test-benchmarkCohortSurvival.R:63:3', 'test-addCohortSurvival.R:71:3',
'test-addCohortSurvival.R:158:3', 'test-addCohortSurvival.R:271:3',
'test-addCohortSurvival.R:377:3', 'test-addCohortSurvival.R:489:3',
'test-addCohortSurvival.R:567:3', 'test-addCohortSurvival.R:667:3',
'test-addCohortSurvival.R:753:3', 'test-generateDeathCohort.R:2:3',
'test-generateDeathCohort.R:62:3', 'test-generateDeathCohort.R:129:3',
'test-generateDeathCohort.R:195:3', 'test-generateDeathCohort.R:262:3',
'test-generateDeathCohort.R:351:3', 'test-generateDeathCohort.R:451:3',
'test-mockMGUS2cdm.R:2:3', 'test-plotSurvival.R:2:3',
'test-plotSurvival.R:19:3', 'test-plotSurvival.R:37:3',
'test-plotSurvival.R:57:3', 'test-plotSurvival.R:77:3',
'test-plotSurvival.R:98:3', 'test-plotSurvival.R:129:3',
'test-plotSurvival.R:149:3', 'test-tableSurvival.R:2:3',
'test-tableSurvival.R:51:3', 'test-estimateSurvival.R:88:3',
'test-estimateSurvival.R:127:3', 'test-estimateSurvival.R:177:3',
'test-estimateSurvival.R:344:3', 'test-estimateSurvival.R:557:3',
'test-estimateSurvival.R:708:3', 'test-estimateSurvival.R:1225:3',
'test-estimateSurvival.R:1351:3', 'test-estimateSurvival.R:1373:3',
'test-estimateSurvival.R:1408:3', 'test-estimateSurvival.R:1484:3',
'test-estimateSurvival.R:1676:3', 'test-estimateSurvival.R:1800:3',
'test-estimateSurvival.R:1830:3', 'test-estimateSurvival.R:1849:3',
'test-estimateSurvival.R:1883:3', 'test-estimateSurvival.R:2014:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-estimateSurvival.R:9:3'): mgus example: no Competing risk ──────
Error in `validateSummariseResult(x)`: ids are not unique in settings
Backtrace:
▆
1. ├─... %>% asSurvivalResult() at test-estimateSurvival.R:9:3
2. ├─CohortSurvival::asSurvivalResult(.)
3. │ └─omopgenerics::newSummarisedResult(result)
4. │ └─omopgenerics:::assertClass(x = x, class = "data.frame")
5. │ ├─base::paste0(...)
6. │ └─base::paste0(base::class(x), collapse = ", ")
7. └─CohortSurvival::estimateSingleEventSurvival(...)
8. └─omopgenerics::newSummarisedResult(surv_estimates)
9. └─omopgenerics:::validateSummariseResult(x)
10. └─cli::cli_abort("ids are not unique in settings")
11. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 45 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'a01_Single_event_of_interest.Rmd' using rmarkdown
Quitting from lines at lines 47-54 [unnamed-chunk-5] (a01_Single_event_of_interest.Rmd)
Error: processing vignette 'a01_Single_event_of_interest.Rmd' failed with diagnostics:
ids are not unique in settings
--- failed re-building 'a01_Single_event_of_interest.Rmd'
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building 'a02_Competing_risk_survival.Rmd' using rmarkdown
Quitting from lines at lines 55-64 [unnamed-chunk-5] (a02_Competing_risk_survival.Rmd)
Error: processing vignette 'a02_Competing_risk_survival.Rmd' failed with diagnostics:
Can't rename columns that don't exist.
✖ Column `V2` doesn't exist.
--- failed re-building 'a02_Competing_risk_survival.Rmd'
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
SUMMARY: processing the following files failed:
'a01_Single_event_of_interest.Rmd' 'a02_Competing_risk_survival.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [54s/47s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortSurvival)
>
> test_check("CohortSurvival")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 45 | PASS 1 ]
══ Skipped tests (45) ══════════════════════════════════════════════════════════
• On CRAN (45): 'test-benchmarkCohortSurvival.R:2:3',
'test-benchmarkCohortSurvival.R:63:3', 'test-addCohortSurvival.R:71:3',
'test-addCohortSurvival.R:158:3', 'test-addCohortSurvival.R:271:3',
'test-addCohortSurvival.R:377:3', 'test-addCohortSurvival.R:489:3',
'test-addCohortSurvival.R:567:3', 'test-addCohortSurvival.R:667:3',
'test-addCohortSurvival.R:753:3', 'test-generateDeathCohort.R:2:3',
'test-generateDeathCohort.R:62:3', 'test-generateDeathCohort.R:129:3',
'test-generateDeathCohort.R:195:3', 'test-generateDeathCohort.R:262:3',
'test-generateDeathCohort.R:351:3', 'test-generateDeathCohort.R:451:3',
'test-mockMGUS2cdm.R:2:3', 'test-plotSurvival.R:2:3',
'test-plotSurvival.R:19:3', 'test-plotSurvival.R:37:3',
'test-plotSurvival.R:57:3', 'test-plotSurvival.R:77:3',
'test-plotSurvival.R:98:3', 'test-plotSurvival.R:129:3',
'test-plotSurvival.R:149:3', 'test-tableSurvival.R:2:3',
'test-tableSurvival.R:51:3', 'test-estimateSurvival.R:88:3',
'test-estimateSurvival.R:127:3', 'test-estimateSurvival.R:177:3',
'test-estimateSurvival.R:344:3', 'test-estimateSurvival.R:557:3',
'test-estimateSurvival.R:708:3', 'test-estimateSurvival.R:1225:3',
'test-estimateSurvival.R:1351:3', 'test-estimateSurvival.R:1373:3',
'test-estimateSurvival.R:1408:3', 'test-estimateSurvival.R:1484:3',
'test-estimateSurvival.R:1676:3', 'test-estimateSurvival.R:1800:3',
'test-estimateSurvival.R:1830:3', 'test-estimateSurvival.R:1849:3',
'test-estimateSurvival.R:1883:3', 'test-estimateSurvival.R:2014:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-estimateSurvival.R:9:3'): mgus example: no Competing risk ──────
Error in `validateSummariseResult(x)`: ids are not unique in settings
Backtrace:
▆
1. ├─... %>% asSurvivalResult() at test-estimateSurvival.R:9:3
2. ├─CohortSurvival::asSurvivalResult(.)
3. │ └─omopgenerics::newSummarisedResult(result)
4. │ └─omopgenerics:::assertClass(x = x, class = "data.frame")
5. │ ├─base::paste0(...)
6. │ └─base::paste0(base::class(x), collapse = ", ")
7. └─CohortSurvival::estimateSingleEventSurvival(...)
8. └─omopgenerics::newSummarisedResult(surv_estimates)
9. └─omopgenerics:::validateSummariseResult(x)
10. └─cli::cli_abort("ids are not unique in settings")
11. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 45 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [55s/52s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortSurvival)
>
> test_check("CohortSurvival")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 45 | PASS 1 ]
══ Skipped tests (45) ══════════════════════════════════════════════════════════
• On CRAN (45): 'test-benchmarkCohortSurvival.R:2:3',
'test-benchmarkCohortSurvival.R:63:3', 'test-addCohortSurvival.R:71:3',
'test-addCohortSurvival.R:158:3', 'test-addCohortSurvival.R:271:3',
'test-addCohortSurvival.R:377:3', 'test-addCohortSurvival.R:489:3',
'test-addCohortSurvival.R:567:3', 'test-addCohortSurvival.R:667:3',
'test-addCohortSurvival.R:753:3', 'test-generateDeathCohort.R:2:3',
'test-generateDeathCohort.R:62:3', 'test-generateDeathCohort.R:129:3',
'test-generateDeathCohort.R:195:3', 'test-generateDeathCohort.R:262:3',
'test-generateDeathCohort.R:351:3', 'test-generateDeathCohort.R:451:3',
'test-mockMGUS2cdm.R:2:3', 'test-plotSurvival.R:2:3',
'test-plotSurvival.R:19:3', 'test-plotSurvival.R:37:3',
'test-plotSurvival.R:57:3', 'test-plotSurvival.R:77:3',
'test-plotSurvival.R:98:3', 'test-plotSurvival.R:129:3',
'test-plotSurvival.R:149:3', 'test-tableSurvival.R:2:3',
'test-tableSurvival.R:51:3', 'test-estimateSurvival.R:88:3',
'test-estimateSurvival.R:127:3', 'test-estimateSurvival.R:177:3',
'test-estimateSurvival.R:344:3', 'test-estimateSurvival.R:557:3',
'test-estimateSurvival.R:708:3', 'test-estimateSurvival.R:1225:3',
'test-estimateSurvival.R:1351:3', 'test-estimateSurvival.R:1373:3',
'test-estimateSurvival.R:1408:3', 'test-estimateSurvival.R:1484:3',
'test-estimateSurvival.R:1676:3', 'test-estimateSurvival.R:1800:3',
'test-estimateSurvival.R:1830:3', 'test-estimateSurvival.R:1849:3',
'test-estimateSurvival.R:1883:3', 'test-estimateSurvival.R:2014:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-estimateSurvival.R:9:3'): mgus example: no Competing risk ──────
Error in `validateSummariseResult(x)`: ids are not unique in settings
Backtrace:
▆
1. ├─... %>% asSurvivalResult() at test-estimateSurvival.R:9:3
2. ├─CohortSurvival::asSurvivalResult(.)
3. │ └─omopgenerics::newSummarisedResult(result)
4. │ └─omopgenerics:::assertClass(x = x, class = "data.frame")
5. │ ├─base::paste0(...)
6. │ └─base::paste0(base::class(x), collapse = ", ")
7. └─CohortSurvival::estimateSingleEventSurvival(...)
8. └─omopgenerics::newSummarisedResult(surv_estimates)
9. └─omopgenerics:::validateSummariseResult(x)
10. └─cli::cli_abort("ids are not unique in settings")
11. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 45 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running 'testthat.R' [36s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortSurvival)
>
> test_check("CohortSurvival")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 45 | PASS 1 ]
══ Skipped tests (45) ══════════════════════════════════════════════════════════
• On CRAN (45): 'test-benchmarkCohortSurvival.R:2:3',
'test-benchmarkCohortSurvival.R:63:3', 'test-addCohortSurvival.R:71:3',
'test-addCohortSurvival.R:158:3', 'test-addCohortSurvival.R:271:3',
'test-addCohortSurvival.R:377:3', 'test-addCohortSurvival.R:489:3',
'test-addCohortSurvival.R:567:3', 'test-addCohortSurvival.R:667:3',
'test-addCohortSurvival.R:753:3', 'test-generateDeathCohort.R:2:3',
'test-generateDeathCohort.R:62:3', 'test-generateDeathCohort.R:129:3',
'test-generateDeathCohort.R:195:3', 'test-generateDeathCohort.R:262:3',
'test-generateDeathCohort.R:351:3', 'test-generateDeathCohort.R:451:3',
'test-mockMGUS2cdm.R:2:3', 'test-plotSurvival.R:2:3',
'test-plotSurvival.R:19:3', 'test-plotSurvival.R:37:3',
'test-plotSurvival.R:57:3', 'test-plotSurvival.R:77:3',
'test-plotSurvival.R:98:3', 'test-plotSurvival.R:129:3',
'test-plotSurvival.R:149:3', 'test-tableSurvival.R:2:3',
'test-tableSurvival.R:51:3', 'test-estimateSurvival.R:88:3',
'test-estimateSurvival.R:127:3', 'test-estimateSurvival.R:177:3',
'test-estimateSurvival.R:344:3', 'test-estimateSurvival.R:557:3',
'test-estimateSurvival.R:708:3', 'test-estimateSurvival.R:1225:3',
'test-estimateSurvival.R:1351:3', 'test-estimateSurvival.R:1373:3',
'test-estimateSurvival.R:1408:3', 'test-estimateSurvival.R:1484:3',
'test-estimateSurvival.R:1676:3', 'test-estimateSurvival.R:1800:3',
'test-estimateSurvival.R:1830:3', 'test-estimateSurvival.R:1849:3',
'test-estimateSurvival.R:1883:3', 'test-estimateSurvival.R:2014:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-estimateSurvival.R:9:3'): mgus example: no Competing risk ──────
Error in `validateSummariseResult(x)`: ids are not unique in settings
Backtrace:
▆
1. ├─... %>% asSurvivalResult() at test-estimateSurvival.R:9:3
2. ├─CohortSurvival::asSurvivalResult(.)
3. │ └─omopgenerics::newSummarisedResult(result)
4. │ └─omopgenerics:::assertClass(x = x, class = "data.frame")
5. │ ├─base::paste0(...)
6. │ └─base::paste0(base::class(x), collapse = ", ")
7. └─CohortSurvival::estimateSingleEventSurvival(...)
8. └─omopgenerics::newSummarisedResult(surv_estimates)
9. └─omopgenerics:::validateSummariseResult(x)
10. └─cli::cli_abort("ids are not unique in settings")
11. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 45 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64