CRAN Package Check Results for Package DClusterm

Last updated on 2026-07-09 14:00:39 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-2 8.11 144.64 152.75 OK
r-devel-linux-x86_64-debian-gcc 1.0-2 5.87 105.10 110.97 OK
r-devel-linux-x86_64-fedora-clang 1.0-2 13.00 215.23 228.23 OK
r-devel-linux-x86_64-fedora-gcc 1.0-2 13.00 228.40 241.40 OK
r-devel-windows-x86_64 1.0-2 10.00 155.00 165.00 OK --no-vignettes
r-patched-linux-x86_64 1.0-2 7.91 112.21 120.12 ERROR
r-release-linux-x86_64 1.0-2 6.31 133.91 140.22 OK
r-release-macos-arm64 1.0-2 2.00 77.00 79.00 OK
r-release-macos-x86_64 1.0-2 6.00 343.00 349.00 OK
r-release-windows-x86_64 1.0-2 11.00 156.00 167.00 OK --no-vignettes
r-oldrel-macos-arm64 1.0-2 OK
r-oldrel-macos-x86_64 1.0-2 5.00 330.00 335.00 OK
r-oldrel-windows-x86_64 1.0-2 12.00 110.00 122.00 OK --no-vignettes

Check Details

Version: 1.0-2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘DClusterm.Rnw’ using Sweave Loading required package: parallel Loading required package: sp Loading required package: spacetime Loading required package: DCluster Loading required package: boot Loading required package: spdep Loading required package: spData To access larger datasets in this package, install the spDataLarge package with: `install.packages('spDataLarge', repos='https://nowosad.github.io/drat/', type='source')` Loading required package: sf Linking to GEOS 3.14.1, GDAL 3.13.1, PROJ 9.8.1; sf_use_s2() is TRUE Loading required package: MASS Loading required package: lattice Attaching package: 'lattice' The following object is masked from 'package:boot': melanoma Loading required package: Matrix Error: processing vignette 'DClusterm.Rnw' failed with diagnostics: chunk 26 Error in checkForRemoteErrors(val) : one node produced an error: Downdated VtV is not positive definite --- failed re-building 'DClusterm.Rnw' make[1]: Entering directory '/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/DClusterm.Rcheck/vign_test/DClusterm/vignettes' pdflatex DClusterm This is pdfTeX, Version 3.141592653-2.6-1.40.29 (TeX Live 2026/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./DClusterm.tex LaTeX2e <2025-11-01> L3 programming layer <2026-05-15> (/home/hornik/tmp/R.check/r-patched-gcc/Work/build/share/texmf/tex/latex/jss.cl s Document Class: jss 2026/04/28 3.6 jss class by Achim Zeileis (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2025/01/22 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size11.clo)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)) (/usr/share/texmf/tex/latex/lm/lmodern.sty) (/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))) (/usr/share/texlive/texmf-dist/tex/generic/thumbpdf/thumbpdf.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texmf/tex/latex/lm/t1lmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file DClusterm.aux. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texmf/tex/latex/lm/ot1lmr.fd) (/usr/share/texmf/tex/latex/lm/omllmm.fd) (/usr/share/texmf/tex/latex/lm/omslmsy.fd) (/usr/share/texmf/tex/latex/lm/omxlmex.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) (/usr/share/texmf/tex/latex/lm/t1lmss.fd) Package natbib Warning: Citation `McCullaghNelder:1989' on page 1 undefined on input line 120. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texmf/fonts/en c/dvips/lm/lm-ec.enc}] Package natbib Warning: Citation `Kulldorff:1997' on page 2 undefined on input line 129. Package natbib Warning: Citation `DCluster:2005' on page 2 undefined on input l ine 149. Package natbib Warning: Citation `SpatialEpi:2016' on page 2 undefined on input line 152. Package natbib Warning: Citation `rsatscan:2015' on page 2 undefined on input l ine 154. Package natbib Warning: Citation `scanstatistics:2018' on page 2 undefined on i nput line 157. Package natbib Warning: Citation `smerc:2015' on page 2 undefined on input line 165. Package natbib Warning: Citation `AMOEBA:2014' on page 2 undefined on input lin e 167. Package natbib Warning: Citation `Molitoretal:2010' on page 2 undefined on inpu t line 169. Package natbib Warning: Citation `PReMiuM:2015' on page 2 undefined on input li ne 170. Package natbib Warning: Citation `SNscan:2016' on page 2 undefined on input lin e 172. Package natbib Warning: Citation `Moraga:2017' on page 2 undefined on input lin e 172. Package natbib Warning: Citation `smacpod:2018' on page 2 undefined on input li ne 176. Package natbib Warning: Citation `Salmonetal:2016' on page 2 undefined on input line 177. Package natbib Warning: Citation `Meyeretal:2017' on page 2 undefined on input line 177. Package natbib Warning: Citation `ClustGeo:2017' on page 2 undefined on input l ine 179. Package natbib Warning: Citation `DClusterm' on page 2 undefined on input line 185. Package natbib Warning: Citation `R:2018' on page 2 undefined on input line 186 . LaTeX Warning: Reference `sec:GLM' on page 2 undefined on input line 191. LaTeX Warning: Reference `sec:mixed' on page 2 undefined on input line 192. LaTeX Warning: Reference `sec:zeroinfl' on page 2 undefined on input line 195. LaTeX Warning: Reference `sec:spacetime' on page 2 undefined on input line 195. LaTeX Warning: Reference `sec:disc' on page 2 undefined on input line 198. [2{/usr/share/texmf/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texmf/fonts/en c/dvips/lm/lm-rm.enc}] Package natbib Warning: Citation `Jung:2009' on page 3 undefined on input line 207. Package natbib Warning: Citation `ZhangLinCSDA:2009' on page 3 undefined on inp ut line 207. Package natbib Warning: Citation `WallerGotway:2004' on page 3 undefined on inp ut line 231. Package natbib Warning: Citation `BilanciaDemarinis:2014' on page 3 undefined o n input line 274. Package natbib Warning: Citation `GomezRubioetal:2018' on page 3 undefined on i nput line 274. Package natbib Warning: Citation `Rueetal:2009' on page 3 undefined on input li ne 277. [3{/usr/share/texmf/fonts/enc/dvips/lm/lm-mathsy.enc}{/usr/share/texmf/fonts/en c/dvips/lm/lm-mathex.enc}] (/usr/share/texmf/tex/latex/lm/t1lmtt.fd) Package natbib Warning: Citation `Walletetal:1992' on page 4 undefined on input line 293. Package natbib Warning: Citation `WallerGotway:2004' on page 4 undefined on inp ut line 293. LaTeX Warning: Reference `fig:NYmap' on page 4 undefined on input line 295. Package natbib Warning: Citation `RColorBrewer:2014' on page 4 undefined on inp ut line 296. Package natbib Warning: Citation `WallerGotway:2004' on page 4 undefined on inp ut line 320. Package natbib Warning: Citation `Pebesma:2012' on page 4 undefined on input li ne 350. Package natbib Warning: Citation `RColorBrewer:2014' undefined on input line 35 4. LaTeX Warning: `h' float specifier changed to `ht'. [4] [5 <./DClusterm-006.pdf>] LaTeX Warning: Reference `sec:spacetime' on page 6 undefined on input line 403. Package natbib Warning: Citation `Dunn:1958' on page 6 undefined on input line 412. [6] LaTeX Warning: Reference `fig:NYcl' on page 7 undefined on input line 498. [7] (/usr/share/texmf/tex/latex/lm/ts1lmtt.fd) LaTeX Warning: Reference `fig:NYcl' on page 8 undefined on input line 584. Package natbib Warning: Citation `gridExtra:2016' on page 8 undefined on input line 585. Package natbib Warning: Citation `latticeExtra:2016' on page 8 undefined on inp ut line 586. LaTeX Warning: `!h' float specifier changed to `!ht'. [8{/usr/share/texmf/fonts/enc/dvips/lm/lm-ts1.enc}] [9 <./DClusterm-017.pdf>] Package natbib Warning: Citation `BilanciaDemarinis:2014' on page 10 undefined on input line 666. Package natbib Warning: Citation `Dean:1992' on page 10 undefined on input line 684. Package natbib Warning: Citation `DCluster:2005' on page 10 undefined on input line 686. [10] Package natbib Warning: Citation `lme4:2015' on page 11 undefined on input line 751. [11] LaTeX Warning: Reference `fig:NYclmm' on page 12 undefined on input line 787. ) Runaway argument? ! File ended while scanning use of \FancyVerbGetLine. <inserted text> \par <*> DClusterm ? ! Emergency stop. <inserted text> \par <*> DClusterm ! ==> Fatal error occurred, no output PDF file produced! Transcript written on DClusterm.log. make[1]: *** [Makefile:6: DClusterm.pdf] Error 1 make[1]: Leaving directory '/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/DClusterm.Rcheck/vign_test/DClusterm/vignettes' Error in tools::buildVignettes(dir = "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/DClusterm.Rcheck/vign_test/DClusterm", : running 'make' failed Execution halted Flavor: r-patched-linux-x86_64