Last updated on 2025-12-14 00:50:32 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.7 | 138.60 | 531.33 | 669.93 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.7 | 92.00 | 374.22 | 466.22 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.7 | 281.00 | 868.96 | 1149.96 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.7 | 205.00 | 451.32 | 656.32 | ERROR | |
| r-devel-windows-x86_64 | 1.7 | 160.00 | 472.00 | 632.00 | OK | |
| r-patched-linux-x86_64 | 1.7 | 142.68 | 507.54 | 650.22 | OK | |
| r-release-linux-x86_64 | 1.7 | 140.75 | 496.59 | 637.34 | ERROR | |
| r-release-macos-arm64 | 1.7 | OK | ||||
| r-release-macos-x86_64 | 1.7 | 89.00 | 271.00 | 360.00 | OK | |
| r-release-windows-x86_64 | 1.7 | 156.00 | 469.00 | 625.00 | OK | |
| r-oldrel-macos-arm64 | 1.7 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.7 | 91.00 | 305.00 | 396.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.7 | 183.00 | 626.00 | 809.00 | OK |
Version: 1.7
Check: examples
Result: ERROR
Running examples in ‘PRECAST-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CreatePRECASTObject
> ### Title: Create the PRECAST object with preprocessing step.
> ### Aliases: CreatePRECASTObject
>
> ### ** Examples
>
> data(PRECASTObj)
> library(Seurat)
Loading required package: SeuratObject
Loading required package: sp
Attaching package: ‘SeuratObject’
The following objects are masked from ‘package:base’:
intersect, t
> seuList <- PRECASTObj@seulist
> ## Check the input of seuList for create PRECAST object.
> ## Check the default assay for each data batch
> lapply(seuList, DefaultAssay)
[[1]]
[1] "RNA"
[[2]]
[1] "RNA"
> ## Check the spatial coordinates in the meta data named "row" and "col".
> head(seuList[[1]]@meta.data)
orig.ident nCount_RNA nFeature_RNA row col true_cluster
cell1_1 cell1 10004 55 1 1 2
cell1_2 cell1 12614 54 2 1 2
cell1_3 cell1 18233 57 3 1 2
cell1_4 cell1 1726 50 4 1 7
cell1_5 cell1 3451 53 5 1 7
cell1_6 cell1 134457 60 6 1 6
> ## Then create PRECAST object using this seuList.
> ## For convenience, we show the user-specified genes' list for creating PRECAST object.
> ## Users can use SVGs from SPARK-X or HVGs.
> PRECASTObj2 <- CreatePRECASTObject(seuList,
+ customGenelist= row.names(seuList[[1]]), verbose=FALSE)
Error in FUN(X[[i]], ...) :
filter_gene: Seuat object must provide slots count or data in assay!
Calls: CreatePRECASTObject -> <Anonymous> -> lapply -> FUN
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 1.7
Check: examples
Result: ERROR
Running examples in ‘PRECAST-Ex.R’ failed
The error most likely occurred in:
> ### Name: CreatePRECASTObject
> ### Title: Create the PRECAST object with preprocessing step.
> ### Aliases: CreatePRECASTObject
>
> ### ** Examples
>
> data(PRECASTObj)
> library(Seurat)
Loading required package: SeuratObject
Loading required package: sp
Attaching package: ‘SeuratObject’
The following objects are masked from ‘package:base’:
intersect, t
> seuList <- PRECASTObj@seulist
> ## Check the input of seuList for create PRECAST object.
> ## Check the default assay for each data batch
> lapply(seuList, DefaultAssay)
[[1]]
[1] "RNA"
[[2]]
[1] "RNA"
> ## Check the spatial coordinates in the meta data named "row" and "col".
> head(seuList[[1]]@meta.data)
orig.ident nCount_RNA nFeature_RNA row col true_cluster
cell1_1 cell1 10004 55 1 1 2
cell1_2 cell1 12614 54 2 1 2
cell1_3 cell1 18233 57 3 1 2
cell1_4 cell1 1726 50 4 1 7
cell1_5 cell1 3451 53 5 1 7
cell1_6 cell1 134457 60 6 1 6
> ## Then create PRECAST object using this seuList.
> ## For convenience, we show the user-specified genes' list for creating PRECAST object.
> ## Users can use SVGs from SPARK-X or HVGs.
> PRECASTObj2 <- CreatePRECASTObject(seuList,
+ customGenelist= row.names(seuList[[1]]), verbose=FALSE)
Error in FUN(X[[i]], ...) :
filter_gene: Seuat object must provide slots count or data in assay!
Calls: CreatePRECASTObject -> <Anonymous> -> lapply -> FUN
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.7
Check: installed package size
Result: NOTE
installed size is 11.8Mb
sub-directories of 1Mb or more:
data 2.2Mb
libs 8.8Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64