Last updated on 2024-10-16 01:48:58 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.5 | 50.19 | 437.33 | 487.52 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.5 | 33.52 | 318.83 | 352.35 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.5 | 441.64 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.5 | 418.52 | ERROR | |||
| r-devel-windows-x86_64 | 0.1.5 | 53.00 | 374.00 | 427.00 | OK | |
| r-patched-linux-x86_64 | 0.1.5 | 46.02 | 407.26 | 453.28 | OK | |
| r-release-linux-x86_64 | 0.1.5 | 42.15 | 402.55 | 444.70 | OK | |
| r-release-macos-arm64 | 0.1.5 | 214.00 | OK | |||
| r-release-macos-x86_64 | 0.1.5 | 311.00 | OK | |||
| r-release-windows-x86_64 | 0.1.5 | 53.00 | 369.00 | 422.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.5 | 13.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 0.1.5 | 11.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 0.1.5 | 70.00 | 515.00 | 585.00 | OK |
Version: 0.1.5
Check: examples
Result: ERROR
Running examples in ‘SMDIC-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: exp2cell
> ### Title: exp2cell
> ### Aliases: exp2cell
>
> ### ** Examples
>
> #get breast cancer gene expression profile.
> exp.example<-GetExampleData("exp.example")
>
> #perform the exp2cell method. Method must be one of "xCell","ssGSEA" and "CIBERSORT".
> cellmatrix<-exp2cell(exp=exp.example,method="ssGSEA") #cell abundance matrix
ℹ GSVA version 1.53.27
! 659 genes with constant values throughout the samples
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'object' in selecting a method for function 'GeneSetCollection': unable to find an inherited method for function ‘GeneSet’ for signature ‘type = "factor"’
Calls: exp2cell ... GeneSetCollection -> mapply -> <Anonymous> -> GeneSet -> <Anonymous>
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘SMDIC.Rmd’ using rmarkdown
Quitting from lines 63-70 [unnamed-chunk-2] (SMDIC.Rmd)
Error: processing vignette 'SMDIC.Rmd' failed with diagnostics:
error in evaluating the argument 'object' in selecting a method for function 'GeneSetCollection': unable to find an inherited method for function 'GeneSet' for signature 'type = "factor"'
--- failed re-building ‘SMDIC.Rmd’
SUMMARY: processing the following file failed:
‘SMDIC.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.5
Check: examples
Result: ERROR
Running examples in ‘SMDIC-Ex.R’ failed
The error most likely occurred in:
> ### Name: exp2cell
> ### Title: exp2cell
> ### Aliases: exp2cell
>
> ### ** Examples
>
> #get breast cancer gene expression profile.
> exp.example<-GetExampleData("exp.example")
>
> #perform the exp2cell method. Method must be one of "xCell","ssGSEA" and "CIBERSORT".
> cellmatrix<-exp2cell(exp=exp.example,method="ssGSEA") #cell abundance matrix
ℹ GSVA version 1.53.27
! 659 genes with constant values throughout the samples
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'object' in selecting a method for function 'GeneSetCollection': unable to find an inherited method for function ‘GeneSet’ for signature ‘type = "factor"’
Calls: exp2cell ... GeneSetCollection -> mapply -> <Anonymous> -> GeneSet -> <Anonymous>
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘SMDIC.Rmd’ using rmarkdown
Quitting from lines 63-70 [unnamed-chunk-2] (SMDIC.Rmd)
Error: processing vignette 'SMDIC.Rmd' failed with diagnostics:
error in evaluating the argument 'object' in selecting a method for function 'GeneSetCollection': unable to find an inherited method for function 'GeneSet' for signature 'type = "factor"'
--- failed re-building ‘SMDIC.Rmd’
SUMMARY: processing the following file failed:
‘SMDIC.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.5
Check: package dependencies
Result: ERROR
Package required but not available: ‘GSVA’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64