Last updated on 2026-03-15 12:51:24 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.1 | 22.40 | 219.12 | 241.52 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 15.49 | 159.47 | 174.96 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.1 | 41.00 | 357.69 | 398.69 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.1 | 39.00 | 359.52 | 398.52 | OK | |
| r-devel-macos-arm64 | 0.1.1 | 6.00 | 87.00 | 93.00 | OK | |
| r-devel-windows-x86_64 | 0.1.1 | 23.00 | 250.00 | 273.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.1 | 21.04 | 203.73 | 224.77 | OK | |
| r-release-linux-x86_64 | 0.1.1 | 22.23 | 193.56 | 215.79 | ERROR | |
| r-release-macos-arm64 | 0.1.1 | 6.00 | 109.00 | 115.00 | OK | |
| r-release-macos-x86_64 | 0.1.1 | 16.00 | 274.00 | 290.00 | OK | |
| r-release-windows-x86_64 | 0.1.1 | 25.00 | 208.00 | 233.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.1 | 6.00 | 89.00 | 95.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.1 | 17.00 | 251.00 | 268.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.1 | 34.00 | 345.00 | 379.00 | OK |
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'annotaR-workflow.Rmd' using rmarkdown
Quitting from annotaR-workflow.Rmd:45-56 [annotation]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [www.ensembl.org]:
Operation timed out after 60010 milliseconds with 0 bytes received
---
Backtrace:
▆
1. ├─... %>% add_drug_links()
2. └─annotaR::add_drug_links(.)
3. ├─biomaRt::getBM(...)
4. │ └─biomaRt:::martCheck(mart)
5. └─biomaRt::useEnsembl("genes", "hsapiens_gene_ensembl")
6. └─biomaRt::useDataset(mart = mart, dataset = dataset, verbose = verbose)
7. └─biomaRt:::.getAttributes(mart, verbose = verbose)
8. └─biomaRt:::.getAttrFilt(mart = mart, verbose = verbose, type = "attributes")
9. └─biomaRt:::bmRequest(...)
10. └─httr2::req_perform(request)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'annotaR-workflow.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [www.ensembl.org]:
Operation timed out after 60010 milliseconds with 0 bytes received
--- failed re-building 'annotaR-workflow.Rmd'
SUMMARY: processing the following file failed:
'annotaR-workflow.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘annotaR-workflow.Rmd’ using rmarkdown
Quitting from annotaR-workflow.Rmd:45-56 [annotation]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [useast.ensembl.org]:
Operation timed out after 10002 milliseconds with 0 bytes received
---
Backtrace:
▆
1. ├─... %>% add_drug_links()
2. ├─annotaR::add_drug_links(.)
3. │ └─"gene" %in% names(annotaR_object)
4. └─annotaR::add_disease_links(.)
5. ├─biomaRt::getBM(...)
6. │ └─biomaRt:::martCheck(mart)
7. └─biomaRt::useEnsembl("genes", "hsapiens_gene_ensembl")
8. └─biomaRt:::.listEnsembl(version = version, GRCh = GRCh, mirror = mirror)
9. └─biomaRt:::.currentEnsemblVersion()
10. └─biomaRt::listEnsemblArchives()
11. └─biomaRt:::.listEnsemblArchives(http_config = list())
12. └─biomaRt:::.checkArchiveList(http_config)
13. └─biomaRt:::.getArchiveList(http_config = http_config)
14. └─httr2::req_perform(html_request)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'annotaR-workflow.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [useast.ensembl.org]:
Operation timed out after 10002 milliseconds with 0 bytes received
--- failed re-building ‘annotaR-workflow.Rmd’
SUMMARY: processing the following file failed:
‘annotaR-workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64