CRAN Package Check Results for Maintainer ‘Carles Breto <carles.breto at uv.es>’

Last updated on 2024-09-01 01:48:41 CEST.

Package	NOTE	OK
panelPomp	5	8

Package panelPomp

Current CRAN status: NOTE: 5, OK: 8

Additional issues

M1mac

Version: 1.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: mif2.Rd: mif2,pomp-method panelPomp-package.Rd: pomp-package panelPomp.Rd: pomp pfilter.Rd: pfilter,pomp-method Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 1.1
Check: tests
Result: NOTE Running ‘_options.R’ Comparing ‘_options.Rout’ to ‘_options.Rout.save’ ... OK Running ‘aaa.R’ Comparing ‘aaa.Rout’ to ‘aaa.Rout.save’ ... OK Running ‘contacts.R’ [24s/66s] Comparing ‘contacts.Rout’ to ‘contacts.Rout.save’ ...14c14 < name [,1] [,2] [,3] [,4] --- > variable [,1] [,2] [,3] [,4] 17c17 < name [,1] [,2] [,3] [,4] --- > variable [,1] [,2] [,3] [,4] Running ‘get_col_row.R’ Comparing ‘get_col_row.Rout’ to ‘get_col_row.Rout.save’ ... OK Running ‘mif2.R’ Comparing ‘mif2.Rout’ to ‘mif2.Rout.save’ ... OK Running ‘mif2_intern.R’ Comparing ‘mif2_intern.Rout’ to ‘mif2_intern.Rout.save’ ... OK Running ‘mif2_methods.R’ Comparing ‘mif2_methods.Rout’ to ‘mif2_methods.Rout.save’ ... OK Running ‘panelGompertz.R’ Comparing ‘panelGompertz.Rout’ to ‘panelGompertz.Rout.save’ ...14c14 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] 17c17 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] Running ‘panelGompertzLikelihood.R’ [5s/12s] Comparing ‘panelGompertzLikelihood.Rout’ to ‘panelGompertzLikelihood.Rout.save’ ... OK Running ‘panelPomp.R’ [4s/10s] Comparing ‘panelPomp.Rout’ to ‘panelPomp.Rout.save’ ... OK Running ‘panelPomp_methods.R’ [4s/10s] Comparing ‘panelPomp_methods.Rout’ to ‘panelPomp_methods.Rout.save’ ... OK Running ‘panelRandomWalk.R’ Comparing ‘panelRandomWalk.Rout’ to ‘panelRandomWalk.Rout.save’ ...14c14 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] 17c17 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] Running ‘panel_loglik.R’ Comparing ‘panel_loglik.Rout’ to ‘panel_loglik.Rout.save’ ... OK Running ‘params.R’ Comparing ‘params.Rout’ to ‘params.Rout.save’ ... OK Running ‘pfilter.R’ [4s/12s] Comparing ‘pfilter.Rout’ to ‘pfilter.Rout.save’ ... OK Running ‘pfilter_methods.R’ Comparing ‘pfilter_methods.Rout’ to ‘pfilter_methods.Rout.save’ ... OK Running ‘plot.R’ Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK Running ‘print-results.R’ Comparing ‘print-results.Rout’ to ‘print-results.Rout.save’ ...26c26 < name [,1] [,2] [,3] [,4] [,5] [,6] --- > variable [,1] [,2] [,3] [,4] [,5] [,6] 31c31 < name [,1] [,2] [,3] [,4] [,5] [,6] --- > variable [,1] [,2] [,3] [,4] [,5] [,6] Running ‘seeded-results.R’ [4s/11s] Comparing ‘seeded-results.Rout’ to ‘seeded-results.Rout.save’ ... OK Running ‘simulate.R’ Comparing ‘simulate.Rout’ to ‘simulate.Rout.save’ ...11c11 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1
Check: tests
Result: NOTE Running ‘_options.R’ Comparing ‘_options.Rout’ to ‘_options.Rout.save’ ... OK Running ‘aaa.R’ Comparing ‘aaa.Rout’ to ‘aaa.Rout.save’ ... OK Running ‘contacts.R’ [23s/61s] Comparing ‘contacts.Rout’ to ‘contacts.Rout.save’ ...14c14 < name [,1] [,2] [,3] [,4] --- > variable [,1] [,2] [,3] [,4] 17c17 < name [,1] [,2] [,3] [,4] --- > variable [,1] [,2] [,3] [,4] Running ‘get_col_row.R’ Comparing ‘get_col_row.Rout’ to ‘get_col_row.Rout.save’ ... OK Running ‘mif2.R’ Comparing ‘mif2.Rout’ to ‘mif2.Rout.save’ ... OK Running ‘mif2_intern.R’ Comparing ‘mif2_intern.Rout’ to ‘mif2_intern.Rout.save’ ... OK Running ‘mif2_methods.R’ Comparing ‘mif2_methods.Rout’ to ‘mif2_methods.Rout.save’ ... OK Running ‘panelGompertz.R’ Comparing ‘panelGompertz.Rout’ to ‘panelGompertz.Rout.save’ ...14c14 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] 17c17 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] Running ‘panelGompertzLikelihood.R’ [5s/13s] Comparing ‘panelGompertzLikelihood.Rout’ to ‘panelGompertzLikelihood.Rout.save’ ... OK Running ‘panelPomp.R’ Comparing ‘panelPomp.Rout’ to ‘panelPomp.Rout.save’ ... OK Running ‘panelPomp_methods.R’ Comparing ‘panelPomp_methods.Rout’ to ‘panelPomp_methods.Rout.save’ ... OK Running ‘panelRandomWalk.R’ Comparing ‘panelRandomWalk.Rout’ to ‘panelRandomWalk.Rout.save’ ...14c14 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] 17c17 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] Running ‘panel_loglik.R’ Comparing ‘panel_loglik.Rout’ to ‘panel_loglik.Rout.save’ ... OK Running ‘params.R’ Comparing ‘params.Rout’ to ‘params.Rout.save’ ... OK Running ‘pfilter.R’ Comparing ‘pfilter.Rout’ to ‘pfilter.Rout.save’ ... OK Running ‘pfilter_methods.R’ Comparing ‘pfilter_methods.Rout’ to ‘pfilter_methods.Rout.save’ ... OK Running ‘plot.R’ Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK Running ‘print-results.R’ Comparing ‘print-results.Rout’ to ‘print-results.Rout.save’ ...26c26 < name [,1] [,2] [,3] [,4] [,5] [,6] --- > variable [,1] [,2] [,3] [,4] [,5] [,6] 31c31 < name [,1] [,2] [,3] [,4] [,5] [,6] --- > variable [,1] [,2] [,3] [,4] [,5] [,6] Running ‘seeded-results.R’ Comparing ‘seeded-results.Rout’ to ‘seeded-results.Rout.save’ ... OK Running ‘simulate.R’ Comparing ‘simulate.Rout’ to ‘simulate.Rout.save’ ...11c11 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.1
Check: tests
Result: NOTE Running '_options.R' [1s] Comparing '_options.Rout' to '_options.Rout.save' ... OK Running 'aaa.R' [1s] Comparing 'aaa.Rout' to 'aaa.Rout.save' ... OK Running 'contacts.R' [13s] Comparing 'contacts.Rout' to 'contacts.Rout.save' ...14c14 < name [,1] [,2] [,3] [,4] --- > variable [,1] [,2] [,3] [,4] 17c17 < name [,1] [,2] [,3] [,4] --- > variable [,1] [,2] [,3] [,4] Running 'get_col_row.R' [1s] Comparing 'get_col_row.Rout' to 'get_col_row.Rout.save' ... OK Running 'mif2.R' [4s] Comparing 'mif2.Rout' to 'mif2.Rout.save' ... OK Running 'mif2_intern.R' [4s] Comparing 'mif2_intern.Rout' to 'mif2_intern.Rout.save' ... OK Running 'mif2_methods.R' [4s] Comparing 'mif2_methods.Rout' to 'mif2_methods.Rout.save' ... OK Running 'panelGompertz.R' [3s] Comparing 'panelGompertz.Rout' to 'panelGompertz.Rout.save' ...14c14 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] 17c17 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] Running 'panelGompertzLikelihood.R' [4s] Comparing 'panelGompertzLikelihood.Rout' to 'panelGompertzLikelihood.Rout.save' ... OK Running 'panelPomp.R' [6s] Comparing 'panelPomp.Rout' to 'panelPomp.Rout.save' ... OK Running 'panelPomp_methods.R' [7s] Comparing 'panelPomp_methods.Rout' to 'panelPomp_methods.Rout.save' ... OK Running 'panelRandomWalk.R' [4s] Comparing 'panelRandomWalk.Rout' to 'panelRandomWalk.Rout.save' ...14c14 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] 17c17 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] Running 'panel_loglik.R' [1s] Comparing 'panel_loglik.Rout' to 'panel_loglik.Rout.save' ... OK Running 'params.R' [4s] Comparing 'params.Rout' to 'params.Rout.save' ... OK Running 'pfilter.R' [6s] Comparing 'pfilter.Rout' to 'pfilter.Rout.save' ... OK Running 'pfilter_methods.R' [4s] Comparing 'pfilter_methods.Rout' to 'pfilter_methods.Rout.save' ... OK Running 'plot.R' [4s] Comparing 'plot.Rout' to 'plot.Rout.save' ... OK Running 'print-results.R' [3s] Comparing 'print-results.Rout' to 'print-results.Rout.save' ...26c26 < name [,1] [,2] [,3] [,4] [,5] [,6] --- > variable [,1] [,2] [,3] [,4] [,5] [,6] 31c31 < name [,1] [,2] [,3] [,4] [,5] [,6] --- > variable [,1] [,2] [,3] [,4] [,5] [,6] Running 'seeded-results.R' [4s] Comparing 'seeded-results.Rout' to 'seeded-results.Rout.save' ... OK Running 'simulate.R' [4s] Comparing 'simulate.Rout' to 'simulate.Rout.save' ...11c11 < name [,1] [,2] [,3] [,4] [,5] --- > variable [,1] [,2] [,3] [,4] [,5] Flavor: r-devel-windows-x86_64