Last updated on 2026-05-13 12:55:19 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.0.1 | 13.10 | 227.06 | 240.16 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.0.1 | 7.69 | 120.14 | 127.83 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 3.0.1 | 21.00 | 336.83 | 357.83 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 3.0.1 | 21.00 | 345.34 | 366.34 | OK | |
| r-devel-windows-x86_64 | 3.0.1 | 17.00 | 290.00 | 307.00 | OK | |
| r-patched-linux-x86_64 | 3.0.1 | 12.73 | 207.64 | 220.37 | OK | |
| r-release-linux-x86_64 | 3.0.1 | 10.30 | 205.92 | 216.22 | OK | |
| r-release-macos-arm64 | 3.0.1 | 3.00 | 65.00 | 68.00 | OK | |
| r-release-macos-x86_64 | 3.0.1 | 10.00 | 232.00 | 242.00 | OK | |
| r-release-windows-x86_64 | 3.0.1 | 17.00 | 290.00 | 307.00 | OK | |
| r-oldrel-macos-arm64 | 3.0.1 | OK | ||||
| r-oldrel-macos-x86_64 | 3.0.1 | 9.00 | 219.00 | 228.00 | OK | |
| r-oldrel-windows-x86_64 | 3.0.1 | 27.00 | 361.00 | 388.00 | OK |
Version: 3.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(eyeris)
eyeris v3.0.1 - Lumpy Space Princess ꒰•ᴗ•｡꒱۶
Welcome! Type ?`eyeris` to get started.
** DuckDB not found. Database features are disabled.
=> To install DuckDB:
- macOS: install.packages('duckdb', type = 'binary')
- Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)
or install.packages('duckdb') if binaries are available
- Windows: install.packages('duckdb')
Once installed, restart R and reload eyeris to enable database storage
(bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).
>
> test_check("eyeris")
** DuckDB not found. Database features are disabled.
=> To install DuckDB:
- macOS: install.packages('duckdb', type = 'binary')
- Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)
or install.packages('duckdb') if binaries are available
- Windows: install.packages('duckdb')
Once installed, restart R and reload eyeris to enable database storage
(bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).
Saving _problems/test-chunked-processing-142.R
v [2026-05-12 17:48:30] [OKAY] Running eyeris::load_asc()
i [2026-05-12 17:48:30] [INFO] Processing block: block_1
v [2026-05-12 17:48:30] [OKAY] Running eyeris::deblink() for block_1
v [2026-05-12 17:48:30] [OKAY] Running eyeris::detransient() for block_1
v [2026-05-12 17:48:30] [OKAY] Running eyeris::interpolate() for block_1
v [2026-05-12 17:48:30] [OKAY] Running eyeris::lpfilt() for block_1
! [2026-05-12 17:48:30] [WARN] Skipping eyeris::downsample() for block_1
! [2026-05-12 17:48:30] [WARN] Skipping eyeris::bin() for block_1
! [2026-05-12 17:48:30] [WARN] Skipping eyeris::detrend() for block_1
v [2026-05-12 17:48:30] [OKAY] Running eyeris::zscore() for block_1
i [2026-05-12 17:48:30] [INFO] Block processing summary:
i [2026-05-12 17:48:30] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2026-05-12 17:48:30] [OKAY] Running eyeris::summarize_confounds()
** DuckDB not found. Database features are disabled.
=> To install DuckDB:
- macOS: install.packages('duckdb', type = 'binary')
- Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)
or install.packages('duckdb') if binaries are available
- Windows: install.packages('duckdb')
Once installed, restart R and reload eyeris to enable database storage
(bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).
Saving _problems/test-parallel-database-21.R
v [2026-05-12 17:48:31] [OKAY] Running eyeris::load_asc()
i [2026-05-12 17:48:31] [INFO] Processing block: block_1
v [2026-05-12 17:48:31] [OKAY] Running eyeris::deblink() for block_1
v [2026-05-12 17:48:31] [OKAY] Running eyeris::detransient() for block_1
v [2026-05-12 17:48:31] [OKAY] Running eyeris::interpolate() for block_1
v [2026-05-12 17:48:31] [OKAY] Running eyeris::lpfilt() for block_1
! [2026-05-12 17:48:31] [WARN] Skipping eyeris::downsample() for block_1
! [2026-05-12 17:48:31] [WARN] Skipping eyeris::bin() for block_1
! [2026-05-12 17:48:31] [WARN] Skipping eyeris::detrend() for block_1
v [2026-05-12 17:48:31] [OKAY] Running eyeris::zscore() for block_1
i [2026-05-12 17:48:31] [INFO] Block processing summary:
i [2026-05-12 17:48:31] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2026-05-12 17:48:31] [OKAY] Running eyeris::summarize_confounds()
** DuckDB not found. Database features are disabled.
=> To install DuckDB:
- macOS: install.packages('duckdb', type = 'binary')
- Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)
or install.packages('duckdb') if binaries are available
- Windows: install.packages('duckdb')
Once installed, restart R and reload eyeris to enable database storage
(bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).
Saving _problems/test-parallel-database-42.R
v [2026-05-12 17:48:31] [OKAY] Running eyeris::load_asc()
i [2026-05-12 17:48:31] [INFO] Processing block: block_1
v [2026-05-12 17:48:31] [OKAY] Running eyeris::deblink() for block_1
v [2026-05-12 17:48:32] [OKAY] Running eyeris::detransient() for block_1
v [2026-05-12 17:48:32] [OKAY] Running eyeris::interpolate() for block_1
v [2026-05-12 17:48:32] [OKAY] Running eyeris::lpfilt() for block_1
! [2026-05-12 17:48:32] [WARN] Skipping eyeris::downsample() for block_1
! [2026-05-12 17:48:32] [WARN] Skipping eyeris::bin() for block_1
! [2026-05-12 17:48:32] [WARN] Skipping eyeris::detrend() for block_1
v [2026-05-12 17:48:32] [OKAY] Running eyeris::zscore() for block_1
i [2026-05-12 17:48:32] [INFO] Block processing summary:
i [2026-05-12 17:48:32] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2026-05-12 17:48:32] [OKAY] Running eyeris::summarize_confounds()
** DuckDB not found. Database features are disabled.
=> To install DuckDB:
- macOS: install.packages('duckdb', type = 'binary')
- Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)
or install.packages('duckdb') if binaries are available
- Windows: install.packages('duckdb')
Once installed, restart R and reload eyeris to enable database storage
(bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).
Saving _problems/test-parallel-database-62.R
v [2026-05-12 17:48:32] [OKAY] Running eyeris::load_asc()
i [2026-05-12 17:48:32] [INFO] Processing block: block_1
v [2026-05-12 17:48:32] [OKAY] Running eyeris::deblink() for block_1
v [2026-05-12 17:48:32] [OKAY] Running eyeris::detransient() for block_1
v [2026-05-12 17:48:32] [OKAY] Running eyeris::interpolate() for block_1
v [2026-05-12 17:48:32] [OKAY] Running eyeris::lpfilt() for block_1
! [2026-05-12 17:48:32] [WARN] Skipping eyeris::downsample() for block_1
! [2026-05-12 17:48:32] [WARN] Skipping eyeris::bin() for block_1
! [2026-05-12 17:48:32] [WARN] Skipping eyeris::detrend() for block_1
v [2026-05-12 17:48:32] [OKAY] Running eyeris::zscore() for block_1
i [2026-05-12 17:48:32] [INFO] Block processing summary:
i [2026-05-12 17:48:32] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2026-05-12 17:48:32] [OKAY] Running eyeris::summarize_confounds()
** DuckDB not found. Database features are disabled.
=> To install DuckDB:
- macOS: install.packages('duckdb', type = 'binary')
- Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)
or install.packages('duckdb') if binaries are available
- Windows: install.packages('duckdb')
Once installed, restart R and reload eyeris to enable database storage
(bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).
Saving _problems/test-parallel-database-82.R
** DuckDB not found. Database features are disabled.
=> To install DuckDB:
- macOS: install.packages('duckdb', type = 'binary')
- Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)
or install.packages('duckdb') if binaries are available
- Windows: install.packages('duckdb')
Once installed, restart R and reload eyeris to enable database storage
(bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).
Saving _problems/test-parallel-database-91.R
** DuckDB not found. Database features are disabled.
=> To install DuckDB:
- macOS: install.packages('duckdb', type = 'binary')
- Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)
or install.packages('duckdb') if binaries are available
- Windows: install.packages('duckdb')
Once installed, restart R and reload eyeris to enable database storage
(bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).
Saving _problems/test-parallel-database-111.R
** DuckDB not found. Database features are disabled.
=> To install DuckDB:
- macOS: install.packages('duckdb', type = 'binary')
- Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)
or install.packages('duckdb') if binaries are available
- Windows: install.packages('duckdb')
Once installed, restart R and reload eyeris to enable database storage
(bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).
Saving _problems/test-parquet-split-15.R
** DuckDB not found. Database features are disabled.
=> To install DuckDB:
- macOS: install.packages('duckdb', type = 'binary')
- Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)
or install.packages('duckdb') if binaries are available
- Windows: install.packages('duckdb')
Once installed, restart R and reload eyeris to enable database storage
(bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).
Saving _problems/test-parquet-split-100.R
** DuckDB not found. Database features are disabled.
=> To install DuckDB:
- macOS: install.packages('duckdb', type = 'binary')
- Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)
or install.packages('duckdb') if binaries are available
- Windows: install.packages('duckdb')
Once installed, restart R and reload eyeris to enable database storage
(bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).
Saving _problems/test-parquet-split-171.R
** DuckDB not found. Database features are disabled.
=> To install DuckDB:
- macOS: install.packages('duckdb', type = 'binary')
- Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)
or install.packages('duckdb') if binaries are available
- Windows: install.packages('duckdb')
Once installed, restart R and reload eyeris to enable database storage
(bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).
Saving _problems/test-parquet-split-231.R
** DuckDB not found. Database features are disabled.
=> To install DuckDB:
- macOS: install.packages('duckdb', type = 'binary')
- Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`)
or install.packages('duckdb') if binaries are available
- Windows: install.packages('duckdb')
Once installed, restart R and reload eyeris to enable database storage
(bidsify(..., db_enabled = TRUE) and eyeris_db_* functions).
Saving _problems/test-parquet-split-283.R
v [2026-05-12 17:48:34] [OKAY] Running eyeris::load_asc()
i [2026-05-12 17:48:35] [INFO] Processing block: block_1
v [2026-05-12 17:48:35] [OKAY] Running eyeris::deblink() for block_1
v [2026-05-12 17:48:35] [OKAY] Running eyeris::detransient() for block_1
v [2026-05-12 17:48:35] [OKAY] Running eyeris::interpolate() for block_1
v [2026-05-12 17:48:35] [OKAY] Running eyeris::lpfilt() for block_1
! [2026-05-12 17:48:35] [WARN] Skipping eyeris::downsample() for block_1
! [2026-05-12 17:48:35] [WARN] Skipping eyeris::bin() for block_1
! [2026-05-12 17:48:35] [WARN] Skipping eyeris::detrend() for block_1
v [2026-05-12 17:48:35] [OKAY] Running eyeris::zscore() for block_1
i [2026-05-12 17:48:35] [INFO] Block processing summary:
i [2026-05-12 17:48:35] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2026-05-12 17:48:35] [OKAY] Running eyeris::summarize_confounds()
v [2026-05-12 17:48:36] [OKAY] Running eyeris::load_asc()
i [2026-05-12 17:48:36] [INFO] Binocular data detected. Processing average
mode.
i [2026-05-12 17:48:36] [INFO] Processing block: block_1
v [2026-05-12 17:48:36] [OKAY] Running eyeris::deblink() for block_1
v [2026-05-12 17:48:36] [OKAY] Running eyeris::detransient() for block_1
v [2026-05-12 17:48:36] [OKAY] Running eyeris::interpolate() for block_1
! [2026-05-12 17:48:36] [WARN] No NAs detected in pupil data... Skipping
interpolation!
v [2026-05-12 17:48:36] [OKAY] Running eyeris::lpfilt() for block_1
! [2026-05-12 17:48:36] [WARN] Skipping eyeris::downsample() for block_1
! [2026-05-12 17:48:36] [WARN] Skipping eyeris::bin() for block_1
! [2026-05-12 17:48:36] [WARN] Skipping eyeris::detrend() for block_1
v [2026-05-12 17:48:36] [OKAY] Running eyeris::zscore() for block_1
i [2026-05-12 17:48:36] [INFO] Block processing summary:
i [2026-05-12 17:48:36] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2026-05-12 17:48:36] [OKAY] Running eyeris::summarize_confounds()
[ FAIL 12 | WARN 0 | SKIP 6 | PASS 33 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• {duckdb} is not installed (1): 'test-database.R:1:1'
• {duckdb} is not installed. (5): 'test-chunked-processing.R:3:3',
'test-chunked-processing.R:107:3', 'test-chunked-processing.R:159:3',
'test-chunked-processing.R:208:3', 'test-chunked-processing.R:340:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-chunked-processing.R:136:3'): eyeris_db_to_chunked_files validates inputs correctly ──
Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-chunked-processing.R:136:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─eyeris::eyeris_db_to_chunked_files(...)
8. └─eyeris:::log_error(...)
── Failure ('test-parallel-database.R:9:5'): manual parallel processing flag enables temporary databases ──
Expected `{ ... }` not to throw any errors.
Actually got a <simpleError> with message:
formal argument "verbose" matched by multiple actual arguments
Backtrace:
▆
1. ├─withr::with_envvar(...) at test-parallel-database.R:4:3
2. │ └─base::force(code)
3. └─testthat::expect_no_error(...) at test-parallel-database.R:9:5
── Failure ('test-parallel-database.R:31:5'): SLURM environment variables are detected for parallel processing ──
Expected `{ ... }` not to throw any errors.
Actually got a <simpleError> with message:
formal argument "verbose" matched by multiple actual arguments
Backtrace:
▆
1. ├─withr::with_envvar(...) at test-parallel-database.R:28:3
2. │ └─base::force(code)
3. └─testthat::expect_no_error(...) at test-parallel-database.R:31:5
── Failure ('test-parallel-database.R:51:5'): PBS environment variables are detected for parallel processing ──
Expected `{ ... }` not to throw any errors.
Actually got a <simpleError> with message:
formal argument "verbose" matched by multiple actual arguments
Backtrace:
▆
1. ├─withr::with_envvar(...) at test-parallel-database.R:48:3
2. │ └─base::force(code)
3. └─testthat::expect_no_error(...) at test-parallel-database.R:51:5
── Failure ('test-parallel-database.R:70:3'): normal database operation works without parallel processing ──
Expected `{ ... }` not to throw any errors.
Actually got a <simpleError> with message:
formal argument "verbose" matched by multiple actual arguments
── Error ('test-parallel-database.R:87:3'): temporary database creation works ──
Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments
Backtrace:
▆
1. └─eyeris:::create_temp_eyeris_database(...) at test-parallel-database.R:87:3
2. └─eyeris:::log_error(...)
── Error ('test-parallel-database.R:107:3'): temporary database merging works ──
Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments
Backtrace:
▆
1. └─eyeris:::create_temp_eyeris_database(...) at test-parallel-database.R:107:3
2. └─eyeris:::log_error(...)
── Error ('test-parquet-split.R:11:3'): eyeris_db_to_parquet creates correctly named files and folders ──
Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments
Backtrace:
▆
1. └─eyeris:::connect_eyeris_database(...) at test-parquet-split.R:11:3
2. └─eyeris:::log_error(...)
── Error ('test-parquet-split.R:96:3'): read_eyeris_parquet correctly reads back split data ──
Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments
Backtrace:
▆
1. └─eyeris:::connect_eyeris_database(...) at test-parquet-split.R:96:3
2. └─eyeris:::log_error(...)
── Error ('test-parquet-split.R:167:3'): eyeris_db_to_parquet handles file size constraints ──
Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments
Backtrace:
▆
1. └─eyeris:::connect_eyeris_database(...) at test-parquet-split.R:167:3
2. └─eyeris:::log_error(...)
── Error ('test-parquet-split.R:227:3'): eyeris_db_to_parquet handles empty database gracefully ──
Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments
Backtrace:
▆
1. └─eyeris:::connect_eyeris_database(...) at test-parquet-split.R:227:3
2. └─eyeris:::log_error(...)
── Error ('test-parquet-split.R:279:5'): read_eyeris_parquet works with db_name parameter ──
Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments
Backtrace:
▆
1. └─eyeris::read_eyeris_parquet(...) at test-parquet-split.R:279:5
2. └─eyeris:::log_error(...)
[ FAIL 12 | WARN 0 | SKIP 6 | PASS 33 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc