Last updated on 2024-10-16 01:48:50 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.7.1 | 4.41 | 60.12 | 64.53 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.7.1 | 3.26 | 39.66 | 42.92 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.7.1 | 102.72 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.7.1 | 111.49 | OK | |||
| r-devel-windows-x86_64 | 1.7.1 | 6.00 | 84.00 | 90.00 | ERROR | |
| r-patched-linux-x86_64 | 1.7.1 | 4.18 | 57.51 | 61.69 | OK | |
| r-release-linux-x86_64 | 1.7.1 | 4.53 | 57.17 | 61.70 | OK | |
| r-release-macos-arm64 | 1.7.1 | 43.00 | OK | |||
| r-release-macos-x86_64 | 1.7.1 | 69.00 | OK | |||
| r-release-windows-x86_64 | 1.7.1 | 6.00 | 86.00 | 92.00 | OK | |
| r-oldrel-macos-arm64 | 1.7.1 | 51.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.7.1 | 113.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.7.1 | 7.00 | 95.00 | 102.00 | OK |
Version: 1.7.1
Check: examples
Result: ERROR
Running examples in ‘lightr-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: lr_parse_procspec
> ### Title: Parse OceanInsight ProcSpec file
> ### Aliases: lr_parse_procspec
>
> ### ** Examples
>
> res <- lr_parse_procspec(system.file("testdata", "procspec_files",
+ "OceanOptics_Linux.ProcSpec",
+ package = "lightr"))
Error in read_xml.raw(charToRaw(enc2utf8(x)), "UTF-8", ..., as_html = as_html, :
Opening and ending tag mismatch: infinity line 7471 and default [76]
Calls: lr_parse_procspec -> read_xml -> read_xml.character -> read_xml.raw
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.7.1
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [8s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(lightr) # nolint
>
> if (requireNamespace("testthat", quietly = TRUE)) {
+
+ library(testthat)
+ test_check("lightr")
+
+ }
1 files found; importing spectra:
1 files found; importing spectra:
2 files found; importing spectra:
2 files found; importing spectra:
1 files found; importing spectra:
1 files found; importing spectra:
1 files found; importing spectra:
[ FAIL 5 | WARN 25 | SKIP 4 | PASS 369 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test_metadata.R:3:3', 'test_metadata.R:19:3',
'test_parsers.R:6:3'
• photobiologyInOut cannot be loaded (1):
'test_compare_photobiologyInOut.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_compare_official.R:13:3'): compare procspec & spectrasuite ───
`specs` (`actual`) not equal to `specs_spectrasuite` (`expected`).
`actual` is NULL
`expected` is an S3 object of class <rspec/data.frame>, a list
── Failure ('test_convert.R:52:3'): Convert recursive ──────────────────────────
tools::file_path_sans_ext(input_files) (`actual`) and tools::file_path_sans_ext(output_data_files) (`expected`) don't have the same values.
* Only in `expected`: "/tmp/RtmpIoedVr/test_convert/procspec_files/OceanOptics_Linux", "/tmp/RtmpIoedVr/test_convert/procspec_files/OceanOptics_Windows", "/tmp/RtmpIoedVr/test_convert/procspec_files/OceanOptics_badencode", "/tmp/RtmpIoedVr/test_convert/procspec_files/whiteref"
── Error ('test_dispatch.R:62:5'): Similar output for all parsers ──────────────
Error in `read_xml.raw(charToRaw(enc2utf8(x)), "UTF-8", ..., as_html = as_html,
options = options)`: Opening and ending tag mismatch: currencySymbol line 7459 and default [76]
Backtrace:
▆
1. └─base::lapply(...) at test_dispatch.R:61:3
2. └─lightr (local) FUN(X[[i]], ...)
3. ├─testthat::expect_silent(...) at test_dispatch.R:62:5
4. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
5. │ ├─testthat (local) .capture(...)
6. │ │ ├─withr::with_output_sink(...)
7. │ │ │ └─base::force(code)
8. │ │ ├─base::withCallingHandlers(...)
9. │ │ └─base::withVisible(code)
10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
11. └─lightr:::dispatch_parser(test.file(file), sep = ",", specnum = 1)
12. └─lightr::lr_parse_procspec(filename)
13. ├─xml2::read_xml(clean_text)
14. └─xml2:::read_xml.character(clean_text)
15. └─xml2:::read_xml.raw(...)
── Failure ('test_getspec.R:23:3'): get_spec recursive ─────────────────────────
Snapshot of `lr_get_spec(test.file(), ext = "ProcSpec", subdir = TRUE)` has changed:
`old` is an S3 object of class <rspec/data.frame>, a list
`new` is NULL
* Run `testthat::snapshot_accept('getspec')` to accept the change.
* Run `testthat::snapshot_review('getspec')` to interactively review the change.
── Failure ('test_getspec.R:44:3'): get_spec interpolate ───────────────────────
`expect_message(...)` did not throw the expected error.
[ FAIL 5 | WARN 25 | SKIP 4 | PASS 369 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.7.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘batch_import.Rmd’ using rmarkdown
--- finished re-building ‘batch_import.Rmd’
--- re-building ‘renormalise.Rmd’ using rmarkdown
Quitting from lines 55-60 [unnamed-chunk-2] (renormalise.Rmd)
Error: processing vignette 'renormalise.Rmd' failed with diagnostics:
Opening and ending tag mismatch: infinity line 7471 and default [76]
--- failed re-building ‘renormalise.Rmd’
--- re-building ‘true_example.Rmd’ using rmarkdown
Quitting from lines 58-61 [unnamed-chunk-4] (true_example.Rmd)
Error: processing vignette 'true_example.Rmd' failed with diagnostics:
need finite 'xlim' values
--- failed re-building ‘true_example.Rmd’
SUMMARY: processing the following files failed:
‘renormalise.Rmd’ ‘true_example.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.7.1
Check: examples
Result: ERROR
Running examples in 'lightr-Ex.R' failed
The error most likely occurred in:
> ### Name: lr_parse_procspec
> ### Title: Parse OceanInsight ProcSpec file
> ### Aliases: lr_parse_procspec
>
> ### ** Examples
>
> res <- lr_parse_procspec(system.file("testdata", "procspec_files",
+ "OceanOptics_Linux.ProcSpec",
+ package = "lightr"))
Error in read_xml.raw(charToRaw(enc2utf8(x)), "UTF-8", ..., as_html = as_html, :
Opening and ending tag mismatch: infinity line 7471 and default [76]
Calls: lr_parse_procspec -> read_xml -> read_xml.character -> read_xml.raw
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.7.1
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [13s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(lightr) # nolint
>
> if (requireNamespace("testthat", quietly = TRUE)) {
+
+ library(testthat)
+ test_check("lightr")
+
+ }
1 files found; importing spectra:
1 files found; importing spectra:
2 files found; importing spectra:
2 files found; importing spectra:
1 files found; importing spectra:
1 files found; importing spectra:
1 files found; importing spectra:
[ FAIL 5 | WARN 25 | SKIP 4 | PASS 369 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test_metadata.R:3:3', 'test_metadata.R:19:3',
'test_parsers.R:6:3'
• photobiologyInOut cannot be loaded (1):
'test_compare_photobiologyInOut.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_compare_official.R:13:3'): compare procspec & spectrasuite ───
`specs` (`actual`) not equal to `specs_spectrasuite` (`expected`).
`actual` is NULL
`expected` is an S3 object of class <rspec/data.frame>, a list
── Failure ('test_convert.R:52:3'): Convert recursive ──────────────────────────
tools::file_path_sans_ext(input_files) (`actual`) and tools::file_path_sans_ext(output_data_files) (`expected`) don't have the same values.
* Only in `expected`: "D:\\temp\\Rtmp4KuvCA/test_convert/procspec_files/OceanOptics_Linux", "D:\\temp\\Rtmp4KuvCA/test_convert/procspec_files/OceanOptics_Windows", "D:\\temp\\Rtmp4KuvCA/test_convert/procspec_files/OceanOptics_badencode", "D:\\temp\\Rtmp4KuvCA/test_convert/procspec_files/whiteref"
── Error ('test_dispatch.R:62:5'): Similar output for all parsers ──────────────
Error in `read_xml.raw(charToRaw(enc2utf8(x)), "UTF-8", ..., as_html = as_html,
options = options)`: Opening and ending tag mismatch: currencySymbol line 7459 and default [76]
Backtrace:
▆
1. └─base::lapply(...) at test_dispatch.R:61:3
2. └─lightr (local) FUN(X[[i]], ...)
3. ├─testthat::expect_silent(...) at test_dispatch.R:62:5
4. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
5. │ ├─testthat (local) .capture(...)
6. │ │ ├─withr::with_output_sink(...)
7. │ │ │ └─base::force(code)
8. │ │ ├─base::withCallingHandlers(...)
9. │ │ └─base::withVisible(code)
10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
11. └─lightr:::dispatch_parser(test.file(file), sep = ",", specnum = 1)
12. └─lightr::lr_parse_procspec(filename)
13. ├─xml2::read_xml(clean_text)
14. └─xml2:::read_xml.character(clean_text)
15. └─xml2:::read_xml.raw(...)
── Failure ('test_getspec.R:23:3'): get_spec recursive ─────────────────────────
Snapshot of `lr_get_spec(test.file(), ext = "ProcSpec", subdir = TRUE)` has changed:
`old` is an S3 object of class <rspec/data.frame>, a list
`new` is NULL
* Run `testthat::snapshot_accept('getspec')` to accept the change.
* Run `testthat::snapshot_review('getspec')` to interactively review the change.
── Failure ('test_getspec.R:44:3'): get_spec interpolate ───────────────────────
`expect_message(...)` did not throw the expected error.
[ FAIL 5 | WARN 25 | SKIP 4 | PASS 369 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.7.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'batch_import.Rmd' using rmarkdown
--- finished re-building 'batch_import.Rmd'
--- re-building 'renormalise.Rmd' using rmarkdown
Quitting from lines 55-60 [unnamed-chunk-2] (renormalise.Rmd)
Error: processing vignette 'renormalise.Rmd' failed with diagnostics:
Opening and ending tag mismatch: infinity line 7471 and default [76]
--- failed re-building 'renormalise.Rmd'
--- re-building 'true_example.Rmd' using rmarkdown
Quitting from lines 58-61 [unnamed-chunk-4] (true_example.Rmd)
Error: processing vignette 'true_example.Rmd' failed with diagnostics:
need finite 'xlim' values
--- failed re-building 'true_example.Rmd'
SUMMARY: processing the following files failed:
'renormalise.Rmd' 'true_example.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64