Last updated on 2026-02-17 13:52:10 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 36.05 | 822.23 | 858.28 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 22.85 | 527.83 | 550.68 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 67.00 | 1311.68 | 1378.68 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 67.00 | 1360.82 | 1427.82 | OK | |
| r-devel-macos-arm64 | 0.10.0 | 8.00 | 122.00 | 130.00 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 39.00 | 585.00 | 624.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 52.06 | 736.08 | 788.14 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 36.48 | 743.52 | 780.00 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 40.00 | 551.00 | 591.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 120.00 | 128.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 28.00 | 1099.00 | 1127.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 54.00 | 676.00 | 730.00 | ERROR |
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [791s/537s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2026-02-15 20:09:27.157009: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:27.158375: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:27.183794: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:27.25293: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:27.475621: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:27.476362: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:27.494338: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:27.54134: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:27.614079: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:27.617664: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:27.659377: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:27.777817: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:27.781972: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:27.838899: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:27.845135: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:27.897204: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:28.076971: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:28.086181: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:28.603579: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:28.606632: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:28.629782: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:28.778972: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:28.84653: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:28.847647: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:28.887647: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:29.198638: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:29.206905: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:29.521156: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:29.524116: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:29.537754: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:29.586107: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:29.656576: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:29.6576: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:29.729016: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:29.849902: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:29.854035: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:30.282384: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:30.283112: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:30.306534: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:30.350484: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:30.451696: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:30.452746: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:30.47979: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:30.611242: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:30.617045: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:30.881019: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:30.881775: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:30.897715: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:30.928355: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:31.060118: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:31.063322: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:31.108732: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:31.275105: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:31.276793: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:31.600912: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:31.601784: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:31.627943: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:31.749531: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:31.930834: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:31.931934: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:31.961065: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:32.093388: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:32.099282: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:32.400098: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:32.400879: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:32.426651: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:32.489785: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:32.67797: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:32.679081: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:32.727043: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:32.858254: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:32.860047: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:33.243982: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:33.24469: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:33.271802: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:33.326511: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:33.629313: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:33.636544: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:33.656802: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:33.729207: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:33.84841: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:33.855574: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:33.877427: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:33.940153: Classical Scaling
Saving _problems/test_pipeop_learnercv-127.R
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 1 | WARN 0 | SKIP 100 | PASS 13056 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_colroles.R:6:3', 'test_pipeop_copy.R:5:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_datefeatures.R:10:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_pipeop_learnercv.R:124:3'): PipeOpLearnerCV - cv ensemble averages fold learners ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('4 string mismatches')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(as.character(result_response), task$class_names[max.col(manual_prob)]) at test_pipeop_learnercv.R:124:3
2. └─testthat::expect_true(...)
[ FAIL 1 | WARN 0 | SKIP 100 | PASS 13056 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [112s/56s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-17 22:27:23.308805: Isomap START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.30905: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.312084: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.318361: Classical Scaling
> test_pipeop_isomap.R: 2026-02-17 22:27:23.331147: Isomap START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.331289: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.333536: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.339837: Classical Scaling
> test_pipeop_isomap.R: 2026-02-17 22:27:23.347521: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.347683: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.352448: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.367492: embedding
> test_pipeop_isomap.R: 2026-02-17 22:27:23.367932: DONE
> test_pipeop_isomap.R: 2026-02-17 22:27:23.375138: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.375276: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.380118: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.394968: embedding
> test_pipeop_isomap.R: 2026-02-17 22:27:23.395358: DONE
> test_pipeop_isomap.R: 2026-02-17 22:27:23.419002: Isomap START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.41917: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.429526: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.462113: Classical Scaling
> test_pipeop_isomap.R: 2026-02-17 22:27:23.47092: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.471218: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.480122: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.55926: embedding
> test_pipeop_isomap.R: 2026-02-17 22:27:23.560439: DONE
> test_pipeop_isomap.R: 2026-02-17 22:27:23.602261: Isomap START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.602481: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.605067: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.611409: Classical Scaling
> test_pipeop_isomap.R: 2026-02-17 22:27:23.618932: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.619097: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.623582: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.638261: embedding
> test_pipeop_isomap.R: 2026-02-17 22:27:23.638634: DONE
> test_pipeop_isomap.R: 2026-02-17 22:27:23.670759: Isomap START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.670893: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.673365: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.679604: Classical Scaling
> test_pipeop_isomap.R: 2026-02-17 22:27:23.691579: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.691752: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.696527: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.711284: embedding
> test_pipeop_isomap.R: 2026-02-17 22:27:23.716513: DONE
> test_pipeop_isomap.R: 2026-02-17 22:27:23.738649: Isomap START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.738764: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.741019: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.746858: Classical Scaling
> test_pipeop_isomap.R: 2026-02-17 22:27:23.758365: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.758604: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.763498: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.77839: embedding
> test_pipeop_isomap.R: 2026-02-17 22:27:23.778763: DONE
> test_pipeop_isomap.R: 2026-02-17 22:27:23.797899: Isomap START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.798039: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.800265: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.806293: Classical Scaling
> test_pipeop_isomap.R: 2026-02-17 22:27:23.819065: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.81928: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.828849: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.843903: embedding
> test_pipeop_isomap.R: 2026-02-17 22:27:23.844531: DONE
> test_pipeop_isomap.R: 2026-02-17 22:27:23.86443: Isomap START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.86455: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.866861: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.873151: Classical Scaling
> test_pipeop_isomap.R: 2026-02-17 22:27:23.884578: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.884872: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.890468: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.906675: embedding
> test_pipeop_isomap.R: 2026-02-17 22:27:23.907125: DONE
> test_pipeop_isomap.R: 2026-02-17 22:27:23.927103: Isomap START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.927223: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.961617: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:23.967929: Classical Scaling
> test_pipeop_isomap.R: 2026-02-17 22:27:23.994226: Isomap START
> test_pipeop_isomap.R: 2026-02-17 22:27:23.994362: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:23.996844: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:24.003124: Classical Scaling
> test_pipeop_isomap.R: 2026-02-17 22:27:24.009826: Isomap START
> test_pipeop_isomap.R: 2026-02-17 22:27:24.00993: constructing knn graph
> test_pipeop_isomap.R: 2026-02-17 22:27:24.012206: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-17 22:27:24.018391: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_select.R:9:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [424s/554s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-16 12:42:03.448789: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:03.44991: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:03.51292: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:03.554752: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:03.685279: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:03.685995: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:03.700435: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:03.749001: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:03.792524: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:03.793396: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:03.86142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:03.974069: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:03.977724: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:04.056452: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:04.057232: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:04.082463: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:04.182457: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:04.18392: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:04.383877: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:04.384168: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:04.410482: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:04.59234: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:04.63203: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:04.632532: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:04.694128: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:05.319163: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:05.324606: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:05.652853: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:05.653286: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:05.663621: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:05.706464: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:05.735485: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:05.736029: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:05.768998: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:05.845539: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:05.847664: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:06.156447: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.157106: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.168529: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:06.203423: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:06.28129: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.282232: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.317968: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:06.413315: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:06.420353: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:06.640564: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.640883: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.68676: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:06.73773: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:06.867146: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.868756: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.933461: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.017234: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:07.020134: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:07.169741: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.170125: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:07.200641: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.233351: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:07.388062: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.388522: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:07.405289: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.499942: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:07.501318: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:07.637899: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.639234: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:07.651689: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.698978: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:07.940215: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.940981: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.083141: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.161899: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:08.16393: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:08.402617: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:08.403039: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.460106: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.502159: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:08.682978: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:08.683359: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.69142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.737656: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:08.763833: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:08.764318: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.7725: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.84466: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [293s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-13 10:38:09.229289: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:09.230367: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:09.244904: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:09.266736: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:09.340793: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:09.341365: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:09.349336: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:09.365758: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:09.404872: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:09.40557: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:09.423121: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:09.469919: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:09.471973: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:09.50609: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:09.506705: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:09.52653: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:09.571266: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:09.573307: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:09.715842: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:09.71655: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:09.84655: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:09.962727: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:10.020612: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:10.021583: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:10.071357: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:10.304629: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:10.310094: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:10.542462: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:10.54315: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:10.569222: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:10.591903: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:10.643749: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:10.644677: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:10.66599: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:10.716407: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:10.718145: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:10.957082: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:10.957791: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:10.969738: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:10.992641: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:11.075648: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:11.076702: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:11.099216: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:11.149513: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:11.151301: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:11.30049: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:11.301196: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:11.313299: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:11.336138: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:11.430021: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:11.431368: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:11.457039: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:11.511413: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:11.513479: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:11.664557: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:11.665361: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:11.67929: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:11.702051: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:11.789662: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:11.790602: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:11.814471: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:11.865152: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:11.867288: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:12.013574: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:12.01424: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:12.025206: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:12.047747: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:12.125583: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-13 10:38:12.126486: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:12.148764: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:12.198792: embedding
> test_pipeop_isomap.R: 2026-02-13 10:38:12.200427: DONE
> test_pipeop_isomap.R: 2026-02-13 10:38:12.341993: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:12.342716: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:12.354536: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:12.380858: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:12.516606: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:12.517185: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:12.525579: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:12.541463: Classical Scaling
> test_pipeop_isomap.R: 2026-02-13 10:38:12.605859: Isomap START
> test_pipeop_isomap.R: 2026-02-13 10:38:12.606675: constructing knn graph
> test_pipeop_isomap.R: 2026-02-13 10:38:12.619377: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-13 10:38:12.641754: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64