CRAN Package Check Results for Maintainer ‘Enrique Blanco-Carmona <scpubr at gmail.com>’

Last updated on 2024-10-06 01:50:12 CEST.

Package	ERROR	NOTE	OK
SCpubr	2	3	8

Package SCpubr

Current CRAN status: ERROR: 2, NOTE: 3, OK: 8

Version: 2.0.2
Check: tests
Result: ERROR Running ‘testthat.R’ [16s/20s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # nolint start > library(testthat) > library(SCpubr) ── SCpubr 2.0.2 ──────────────────────────────────────────────────────────────── ℹ Have a look at extensive tutorials in SCpubr's book. ✔ If you use SCpubr in your research, please cite it accordingly. ★ If the package is useful to you, consider leaving a Star in the GitHub repository. ! Keep track of the package updates on Twitter (@Enblacar) or in the Official NEWS website. ♥ Happy plotting! ── Tips! ── ℹ To remove the white and black end from continuous palettes, use: options("SCpubr.ColorPaletteEnds" = FALSE) ✖ To suppress this startup message, use: suppressPackageStartupMessages(library(SCpubr)) ✖ Alternatively, you can also set the following option: options("SCpubr.verbose" = FALSE) And then load the package normally (and faster) as: library(SCpubr) ──────────────────────────────────────────────────────────────────────────────── > # nolint end > test_check("SCpubr") Error in `FUN()`: ! In path: "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCpubr.Rcheck/tests/testthat/setup.R" Caused by error in `dbFileConnect()`: ! DB file '' not found Backtrace: ▆ 1. ├─testthat::test_check("SCpubr") 2. │ └─testthat::test_dir(...) 3. │ └─testthat:::test_files(...) 4. │ └─testthat:::test_files_serial(...) 5. │ └─testthat:::test_files_setup_state(...) 6. │ └─testthat::source_test_setup(".", env) 7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE) 8. │ └─base::lapply(...) 9. │ └─testthat (local) FUN(X[[i]], ...) 10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap) 11. │ ├─base::withCallingHandlers(...) 12. │ └─base::eval(exprs, env) 13. │ └─base::eval(exprs, env) 14. │ └─AnnotationDbi::loadDb(...) at tests/testthat/setup.R:72:5 15. │ └─AnnotationDbi::dbFileConnect(file) 16. │ └─base::stop("DB file '", dbfile, "' not found") 17. └─base::.handleSimpleError(`<fn>`, "DB file '' not found", base::quote(dbFileConnect(file))) 18. └─testthat (local) h(simpleError(msg, call)) 19. └─rlang::abort(...) Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.0.2
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘org.Hs.eg.db’ Flavor: r-patched-linux-x86_64

Version: 2.0.2
Check: tests
Result: ERROR Running ‘testthat.R’ [22s/29s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # nolint start > library(testthat) > library(SCpubr) ── SCpubr 2.0.2 ──────────────────────────────────────────────────────────────── ℹ Have a look at extensive tutorials in SCpubr's book. ✔ If you use SCpubr in your research, please cite it accordingly. ★ If the package is useful to you, consider leaving a Star in the GitHub repository. ! Keep track of the package updates on Twitter (@Enblacar) or in the Official NEWS website. ♥ Happy plotting! ── Tips! ── ℹ To remove the white and black end from continuous palettes, use: options("SCpubr.ColorPaletteEnds" = FALSE) ✖ To suppress this startup message, use: suppressPackageStartupMessages(library(SCpubr)) ✖ Alternatively, you can also set the following option: options("SCpubr.verbose" = FALSE) And then load the package normally (and faster) as: library(SCpubr) ──────────────────────────────────────────────────────────────────────────────── > # nolint end > test_check("SCpubr") Error in `FUN()`: ! In path: "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/SCpubr.Rcheck/tests/testthat/setup.R" Caused by error in `dbFileConnect()`: ! DB file '' not found Backtrace: ▆ 1. ├─testthat::test_check("SCpubr") 2. │ └─testthat::test_dir(...) 3. │ └─testthat:::test_files(...) 4. │ └─testthat:::test_files_serial(...) 5. │ └─testthat:::test_files_setup_state(...) 6. │ └─testthat::source_test_setup(".", env) 7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE) 8. │ └─base::lapply(...) 9. │ └─testthat (local) FUN(X[[i]], ...) 10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap) 11. │ ├─base::withCallingHandlers(...) 12. │ └─base::eval(exprs, env) 13. │ └─base::eval(exprs, env) 14. │ └─AnnotationDbi::loadDb(...) at tests/testthat/setup.R:72:5 15. │ └─AnnotationDbi::dbFileConnect(file) 16. │ └─base::stop("DB file '", dbfile, "' not found") 17. └─base::.handleSimpleError(`<fn>`, "DB file '' not found", base::quote(dbFileConnect(file))) 18. └─testthat (local) h(simpleError(msg, call)) 19. └─rlang::abort(...) Execution halted Flavor: r-patched-linux-x86_64

Version: 2.0.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'AUCell', 'infercnv', 'Nebulosa' Flavor: r-release-macos-arm64

Version: 2.0.2
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘infercnv’ Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 2.0.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'AUCell', 'decoupleR', 'infercnv', 'Nebulosa' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64