Last updated on 2025-12-13 13:48:56 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.0 | 53.44 | 631.91 | 685.35 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.0 | 37.71 | 450.31 | 488.02 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3.0 | 94.00 | 977.52 | 1071.52 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.3.0 | 83.00 | 896.53 | 979.53 | ERROR | |
| r-devel-windows-x86_64 | 1.3.0 | 50.00 | 675.00 | 725.00 | OK | |
| r-patched-linux-x86_64 | 1.3.0 | 50.27 | 609.46 | 659.73 | OK | |
| r-release-linux-x86_64 | 1.3.0 | 47.07 | 601.40 | 648.47 | OK | |
| r-release-macos-arm64 | 1.3.0 | OK | ||||
| r-release-macos-x86_64 | 1.3.0 | 33.00 | 497.00 | 530.00 | OK | |
| r-release-windows-x86_64 | 1.3.0 | 56.00 | 663.00 | 719.00 | OK | |
| r-oldrel-macos-arm64 | 1.3.0 | OK | ||||
| r-oldrel-macos-x86_64 | 1.3.0 | 34.00 | 534.00 | 568.00 | OK | |
| r-oldrel-windows-x86_64 | 1.3.0 | 71.00 | 816.00 | 887.00 | OK |
Version: 1.3.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Baseline-Vignette.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Baseline-Vignette.Rmd’
--- re-building ‘DistToNearest-Vignette.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘DistToNearest-Vignette.Rmd’
--- re-building ‘Mutation-Vignette.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Mutation-Vignette.Rmd’
--- re-building ‘Shmulate-Vignette.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Shmulate-Vignette.Rmd’
--- re-building ‘Targeting-Vignette.Rmd’ using rmarkdown
Quitting from Targeting-Vignette.Rmd:166-170 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [2] must be the same length as the vector [0]
---
Backtrace:
x
1. \-shazam::plotMutability(model, nucleotides = "A", style = "hedgehog")
2. \-base::`colnames<-`(`*tmp*`, value = paste0("pos", 1:ncol(mut_positions)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics:
'names' attribute [2] must be the same length as the vector [0]
--- failed re-building ‘Targeting-Vignette.Rmd’
SUMMARY: processing the following file failed:
‘Targeting-Vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Baseline-Vignette.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Baseline-Vignette.Rmd’
--- re-building ‘DistToNearest-Vignette.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘DistToNearest-Vignette.Rmd’
--- re-building ‘Mutation-Vignette.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Mutation-Vignette.Rmd’
--- re-building ‘Shmulate-Vignette.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Shmulate-Vignette.Rmd’
--- re-building ‘Targeting-Vignette.Rmd’ using rmarkdown
Quitting from Targeting-Vignette.Rmd:166-170 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [2] must be the same length as the vector [0]
---
Backtrace:
x
1. \-shazam::plotMutability(model, nucleotides = "A", style = "hedgehog")
2. \-base::`colnames<-`(`*tmp*`, value = paste0("pos", 1:ncol(mut_positions)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics:
'names' attribute [2] must be the same length as the vector [0]
--- failed re-building ‘Targeting-Vignette.Rmd’
SUMMARY: processing the following file failed:
‘Targeting-Vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc