Last updated on 2026-07-03 12:54:03 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.0 | 5.78 | 68.03 | 73.81 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.4.0 | 4.65 | 50.33 | 54.98 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.4.0 | 14.00 | 161.19 | 175.19 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.4.0 | 11.00 | 191.54 | 202.54 | OK | |
| r-devel-windows-x86_64 | 0.4.0 | 9.00 | 101.00 | 110.00 | OK | |
| r-patched-linux-x86_64 | 0.4.0 | 7.77 | 63.36 | 71.13 | OK | |
| r-release-linux-x86_64 | 0.4.0 | OK | ||||
| r-release-macos-arm64 | 0.4.0 | 2.00 | 24.00 | 26.00 | OK | |
| r-release-macos-x86_64 | 0.4.0 | 5.00 | 96.00 | 101.00 | OK | |
| r-release-windows-x86_64 | 0.4.0 | 12.00 | 90.00 | 102.00 | OK | |
| r-oldrel-macos-arm64 | 0.4.0 | 2.00 | 23.00 | 25.00 | OK | |
| r-oldrel-macos-x86_64 | 0.4.0 | 6.00 | 217.00 | 223.00 | OK | |
| r-oldrel-windows-x86_64 | 0.4.0 | 14.00 | 105.00 | 119.00 | OK |
Version: 0.4.0
Check: dependencies in R code
Result: NOTE
Missing object imported by a ':::' call: ‘cohortBuilder:::get_filter_state’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.4.0
Check: examples
Result: ERROR
Running examples in ‘shinyCohortBuilder-Ex.R’ failed
The error most likely occurred in:
> ### Name: autofilter
> ### Title: Generate filters definition based on the Source data
> ### Aliases: autofilter autofilter.default autofilter.tblist
>
> ### ** Examples
>
> library(magrittr)
> library(cohortBuilder)
Attaching package: ‘cohortBuilder’
The following object is masked from ‘package:shinyCohortBuilder’:
autofilter
The following objects are masked from ‘package:stats’:
filter, step
> library(shinyCohortBuilder)
>
> iris_source <- set_source(tblist(iris = iris)) %>%
+ autofilter()
> iris_cohort <- cohort(iris_source)
Error in `map()`:
ℹ In index: 1.
ℹ With name: iris-SepalLength.
Caused by error:
! Can't get S7 properties with `$`. Did you mean `filter@gui`?
Backtrace:
▆
1. ├─cohortBuilder::cohort(iris_source)
2. │ └─Cohort$new(...) at cohortBuilder/R/cohort_methods.R:1297:3
3. │ └─cohortBuilder (local) initialize(...)
4. │ └─private$init_source(source, ...) at cohortBuilder/R/cohort_methods.R:47:9
5. │ └─cohortBuilder:::run_hooks(hook$post, self, private, ...) at cohortBuilder/R/cohort_methods.R:1266:7
6. │ └─shinyCohortBuilder (local) hook(...) at cohortBuilder/R/hooks.R:116:7
7. │ └─public$modify(...)
8. │ └─shinyCohortBuilder (local) modifier(self, private) at cohortBuilder/R/cohort_methods.R:1212:7
9. │ └─shinyCohortBuilder:::attach_filters_gui(private$steps[[step_id]])
10. │ └─step$filters %>% purrr::modify(attach_filter_gui)
11. ├─purrr::modify(., attach_filter_gui)
12. │ └─purrr::map(vec_proxy(.x), .f, ...)
13. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
14. │ ├─purrr:::with_indexed_errors(...)
15. │ │ └─base::withCallingHandlers(...)
16. │ ├─purrr:::call_with_cleanup(...)
17. │ └─shinyCohortBuilder (local) .f(.x[[i]], ...)
18. │ ├─filter$gui
19. │ └─S7:::`$.S7_object`(filter, "gui")
20. │ └─base::stop(msg, call. = FALSE)
21. └─base::.handleSimpleError(...)
22. └─purrr (local) h(simpleError(msg, call))
23. └─cli::cli_abort(...)
24. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘custom-gui-layer.Rmd’ using rmarkdown
--- finished re-building ‘custom-gui-layer.Rmd’
--- re-building ‘gui-filter-layer.Rmd’ using rmarkdown
Quitting from gui-filter-layer.Rmd:38-41 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `species_filter()`:
! could not find function "species_filter"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'gui-filter-layer.Rmd' failed with diagnostics:
could not find function "species_filter"
--- failed re-building ‘gui-filter-layer.Rmd’
--- re-building ‘package-options.Rmd’ using rmarkdown
--- finished re-building ‘package-options.Rmd’
--- re-building ‘shinyCohortBuilder.Rmd’ using rmarkdown
Quitting from shinyCohortBuilder.Rmd:199-205 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/purrr_error_indexed>
Error in `map()`:
ℹ In index: 1.
ℹ With name: iris-SepalLength.
Caused by error:
! Can't get S7 properties with `$`. Did you mean `filter@gui`?
---
Backtrace:
▆
1. ├─cohortBuilder::cohort(iris_source)
2. │ └─Cohort$new(...) at cohortBuilder/R/cohort_methods.R:1297:3
3. │ └─cohortBuilder (local) initialize(...)
4. │ └─private$init_source(source, ...) at cohortBuilder/R/cohort_methods.R:47:9
5. │ └─cohortBuilder:::run_hooks(hook$post, self, private, ...) at cohortBuilder/R/cohort_methods.R:1266:7
6. │ └─shinyCohortBuilder (local) hook(...) at cohortBuilder/R/hooks.R:116:7
7. │ └─public$modify(...)
8. │ └─shinyCohortBuilder (local) modifier(self, private) at cohortBuilder/R/cohort_methods.R:1212:7
9. │ └─shinyCohortBuilder:::attach_filters_gui(private$steps[[step_id]])
10. │ └─step$filters %>% purrr::modify(attach_filter_gui)
11. └─purrr::modify(., attach_filter_gui)
12. └─purrr::map(vec_proxy(.x), .f, ...)
13. └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
14. ├─purrr:::with_indexed_errors(...)
15. │ └─base::withCallingHandlers(...)
16. ├─purrr:::call_with_cleanup(...)
17. └─shinyCohortBuilder (local) .f(.x[[i]], ...)
18. ├─filter$gui
19. └─S7:::`$.S7_object`(filter, "gui")
20. └─base::stop(msg, call. = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'shinyCohortBuilder.Rmd' failed with diagnostics:
ℹ In index: 1.
ℹ With name: iris-SepalLength.
Caused by error:
! Can't get S7 properties with `$`. Did you mean `filter@gui`?
--- failed re-building ‘shinyCohortBuilder.Rmd’
--- re-building ‘updating-source.Rmd’ using rmarkdown
--- finished re-building ‘updating-source.Rmd’
SUMMARY: processing the following files failed:
‘gui-filter-layer.Rmd’ ‘shinyCohortBuilder.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang