Estimates phylogenetic trees from allele count data using the root distance method under the Coalescent Model. Given a matrix of allele counts across taxa and loci, the package estimates pairwise root distances under the Coalescent Model using maximum likelihood estimation. Then, it estimates a labeled phylogenetic tree from the estimated root distances. See Peng et al. (2021) <doi:10.1016/j.ympev.2021.107142>.
| Version: | 0.1.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | ape, parallel, pbapply, phangorn, rootSolve |
| Published: | 2026-05-27 |
| DOI: | 10.32614/CRAN.package.CoalescentPhylo (may not be active yet) |
| Author: | Arindam RoyChoudhury [aut, cre, cph], Ying Li [aut] |
| Maintainer: | Arindam RoyChoudhury <arr2014 at med.cornell.edu> |
| BugReports: | https://github.com/ArindamRoyChoudhury/CoalescentPhylo/issues |
| License: | AGPL-3 |
| URL: | https://github.com/ArindamRoyChoudhury/CoalescentPhylo |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | CoalescentPhylo results |
| Reference manual: | CoalescentPhylo.html , CoalescentPhylo.pdf |
| Package source: | CoalescentPhylo_0.1.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
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