r4sub is the meta-package for the R4SUB (R for Regulatory Submission) clinical submission readiness ecosystem.
A single library(r4sub) call installs and attaches all
core packages.
install.packages("r4sub")library(r4sub)
# -- Attaching R4SUB packages (r4sub 0.1.0) -----
# r4subcore 0.1.1
# r4subtrace 0.1.0
# r4subscore 0.1.0
# r4subrisk 0.1.0
# r4subdata 0.1.1
# r4subprofile 0.1.0
# All ecosystem functions are now available
data(evidence_pharma) # from r4subdata
scores <- compute_indicator_scores(evidence_pharma) # from r4subscore
sci <- compute_sci(compute_pillar_scores(scores)) # from r4subscore
# Ecosystem utilities
r4sub_packages() # versions and attachment status
r4sub_status() # installation check
r4sub_conflicts() # detect function name collisions
r4sub_news() # what changed in each package
r4sub_cite() # citation info for regulatory documentsoptions(r4sub.quiet = TRUE)
library(r4sub)| Package | Purpose | Auto-attached? |
|---|---|---|
| r4subcore | Evidence schema, scoring primitives, parsers | Yes |
| r4subtrace | ADaM/SDTM traceability engine | Yes |
| r4subscore | Submission Confidence Index (SCI) scoring | Yes |
| r4subrisk | FMEA-based risk quantification | Yes |
| r4subdata | Example datasets for demos and testing | Yes |
| r4subprofile | Regulatory submission profiles | Yes |
| r4subui | Interactive Shiny dashboard | No (install separately) |
| Function | Purpose |
|---|---|
core_packages() |
List the 6 auto-attached package names |
r4sub_packages() |
Show all packages with installed version and attachment status |
r4sub_status() |
Check which ecosystem packages are installed |
r4sub_conflicts() |
Report function name conflicts with other loaded packages |
r4sub_news() |
Show NEWS entries for each ecosystem package |
r4sub_cite() |
Print citation information for regulatory or academic use |
If another loaded package exports a function with the same name as an
R4SUB function, use the :: operator to be explicit:
r4subcore::validate_evidence(ev)
r4subscore::compute_sci(pillar_scores)Run r4sub_conflicts() after library(r4sub)
to see any collisions.
MIT