| Title: | Imports Log and Data Files from Eosense Flux Chambers |
| Version: | 0.0.1 |
| Date: | 2026-01-30 |
| Description: | Imports log and data files from "Eosense" ecosystem gas flux chambers into dataframes that can directly be used with "fluxible" by Gaudard et al (2025) <doi:10.1111/2041-210X.70161>. |
| License: | GPL (≥ 3) |
| Encoding: | UTF-8 |
| RoxygenNote: | 7.3.3 |
| Imports: | dplyr, lubridate, purrr, readr, rlang, tidyr |
| Suggests: | testthat (≥ 3.0.0) |
| Depends: | R (≥ 4.1) |
| Config/testthat/edition: | 3 |
| URL: | https://jogaudard.github.io/readosense/ |
| BugReports: | https://github.com/jogaudard/readosense/issues |
| NeedsCompilation: | no |
| Packaged: | 2026-02-04 09:45:54 UTC; jga051 |
| Author: | Joseph Gaudard 
[aut, cre] |
| Maintainer: | Joseph Gaudard <joseph.gaudard@pm.me> |
| Repository: | CRAN |
| Date/Publication: | 2026-02-07 12:40:02 UTC |
imports data files from Eosense chambers
Description
imports data files from Eosense chambers
Usage
eo_data(path)
Arguments
path |
location of the data files |
Value
a dataframe with continuous measurement with timestamps
Examples
path <- system.file("extdata/ex_data", package = "readosense")
eo_data(path)
extracts the environmental data from the logs
Description
extracts the environmental data from the logs
Usage
eo_env(logs)
Arguments
logs |
as provided by eo_import_logs |
Value
a dataframe with the datetime, air temperature (celsius), and pressure (atm) for all chambers
Examples
path <- system.file("extdata/ex_logs", package = "readosense")
eo_import_logs(path) |>
eo_env()
imports log files from Eosense chambers
Description
imports log files from Eosense chambers
Usage
eo_import_logs(
path,
closed = c(1:3),
open = 0,
fully_closed = 1,
colnames = c("port", "valvestatus", "chamberstatus", "aux1", "aux2", "aux3", "aux4",
"aux5", "temperaturev", "pressure"),
nb_ports = 12
)
Arguments
path |
folder in which the log files are located |
closed |
status numbers indicating chamber is closed |
open |
status numbers indicating chamber is open |
fully_closed |
status number indicating the chamber is fully closed |
colnames |
column names as defined in Eosense documentation |
nb_ports |
number of ports |
Value
a dataframe with all the information from the logs and measurement id
Examples
path <- system.file("extdata/ex_logs", package = "readosense")
eo_import_logs(path)
extracts the measurements metadata from the logs
Description
extracts the measurements metadata from the logs
Usage
eo_logs(logs, time_buffer = 300)
Arguments
logs |
as provided by eo_import_logs |
time_buffer |
around the full closure of the chamber in seconds |
Value
a dataframe with the measurement ids, port, and closing and opening time
Examples
path <- system.file("extdata/ex_logs", package = "readosense")
eo_import_logs(path) |>
eo_logs()