statgenHTP: High Throughput Phenotyping (HTP) Data Analysis

Phenotypic analysis of data coming from high throughput phenotyping (HTP) platforms, including different types of outlier detection, spatial analysis, and parameter estimation. The package is being developed within the EPPN2020 project (<https://eppn2020.plant-phenotyping.eu/>). Some functions have been created to be used in conjunction with the R package 'asreml' for the 'ASReml' software, which can be obtained upon purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r/>).

Version: 1.0.7
Depends: R (≥ 3.6)
Imports: animation, factoextra, ggforce, ggplot2 (≥ 3.3.0), ggnewscale, grid, gridExtra, Matrix, methods, LMMsolver, locfit, lubridate, rlang, reshape2, scales, spam, SpATS (≥ 1.0-13)
Suggests: asreml (≥ 4.0), knitr, rmarkdown, tinytest (≥ 1.2.4)
Published: 2024-10-14
DOI: 10.32614/CRAN.package.statgenHTP
Author: Emilie J Millet ORCID iD [aut], Maria Xose Rodriguez Alvarez ORCID iD [aut], Diana Marcela Perez Valencia ORCID iD [aut], Isabelle Sanchez [aut], Nadine Hilgert [aut], Bart-Jan van Rossum ORCID iD [aut, cre], Fred van Eeuwijk ORCID iD [aut], Martin Boer [aut]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl>
BugReports: https://github.com/Biometris/statgenHTP/issues
License: GPL-2 | GPL-3 [expanded from: GPL]
URL: https://biometris.github.io/statgenHTP/index.html, https://github.com/Biometris/statgenHTP/
NeedsCompilation: no
Materials: README NEWS
In views: Agriculture
CRAN checks: statgenHTP results

Documentation:

Reference manual: statgenHTP.pdf
Vignettes: Overview (source, R code)

Downloads:

Package source: statgenHTP_1.0.7.tar.gz
Windows binaries: r-devel: statgenHTP_1.0.7.zip, r-release: statgenHTP_1.0.7.zip, r-oldrel: statgenHTP_1.0.7.zip
macOS binaries: r-release (arm64): statgenHTP_1.0.7.tgz, r-oldrel (arm64): statgenHTP_1.0.7.tgz, r-release (x86_64): statgenHTP_1.0.7.tgz, r-oldrel (x86_64): statgenHTP_1.0.7.tgz
Old sources: statgenHTP archive

Linking:

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