Clazz.declarePackage("JU");
Clazz.load(["J.api.JmolGraphicsInterface", "JU.Normix"], "JU.GData", ["JU.AU", "$.P3", "$.V3", "JU.C", "$.Font", "$.Shader"], function(){
var c$ = Clazz.decorateAsClass(function(){
this.apiPlatform = null;
this.translucentCoverOnly = false;
this.currentlyRendering = false;
this.antialiasEnabled = false;
this.windowWidth = 0;
this.windowHeight = 0;
this.displayMinX = 0;
this.displayMaxX = 0;
this.displayMinY = 0;
this.displayMaxY = 0;
this.displayMinX2 = 0;
this.displayMaxX2 = 0;
this.displayMinY2 = 0;
this.displayMaxY2 = 0;
this.antialiasThisFrame = false;
this.inGreyscaleMode = false;
this.changeableColixMap = null;
this.backgroundImage = null;
this.newWindowWidth = 0;
this.newWindowHeight = 0;
this.newAntialiasing = false;
this.bgcolor = 0;
this.contrastColix = 0;
this.xLast = 0;
this.yLast = 0;
this.slab = 0;
this.depth = 0;
this.width = 0;
this.height = 0;
this.ambientOcclusion = 0;
this.colixCurrent = 0;
this.argbCurrent = 0;
this.ht3 = 0;
this.isPass2 = false;
this.textY = 0;
this.bufferSize = 0;
this.shader = null;
this.vwr = null;
this.graphicsForMetrics = null;
this.currentFont = null;
this.argbNoisyUp = 0;
this.argbNoisyDn = 0;
this.transformedVectors = null;
Clazz.instantialize(this, arguments);}, JU, "GData", null, J.api.JmolGraphicsInterface);
Clazz.prepareFields (c$, function(){
this.changeableColixMap =  Clazz.newShortArray (16, 0);
this.transformedVectors =  new Array(JU.GData.normixCount);
});
Clazz.makeConstructor(c$, 
function(){
this.shader =  new JU.Shader();
});
Clazz.defineMethod(c$, "initialize", 
function(vwr, apiPlatform){
this.vwr = vwr;
this.apiPlatform = apiPlatform;
}, "JV.Viewer,J.api.GenericPlatform");
Clazz.defineMethod(c$, "setDepth", 
function(depthValue){
this.depth = depthValue < 0 ? 0 : depthValue;
}, "~N");
Clazz.overrideMethod(c$, "setSlab", 
function(slabValue){
this.slab = Math.max(0, slabValue);
}, "~N");
Clazz.overrideMethod(c$, "setSlabAndZShade", 
function(slab, depth, zSlab, zDepth, zPower){
this.setSlab(slab);
this.setDepth(depth);
}, "~N,~N,~N,~N,~N");
Clazz.defineMethod(c$, "setAmbientOcclusion", 
function(value){
this.ambientOcclusion = value;
}, "~N");
Clazz.overrideMethod(c$, "isAntialiased", 
function(){
return this.antialiasThisFrame;
});
Clazz.defineMethod(c$, "getChangeableColix", 
function(id, argb){
if (id >= this.changeableColixMap.length) this.changeableColixMap = JU.AU.arrayCopyShort(this.changeableColixMap, id + 16);
if (this.changeableColixMap[id] == 0) this.changeableColixMap[id] = JU.C.getColix(argb);
return (id | -32768);
}, "~N,~N");
Clazz.defineMethod(c$, "changeColixArgb", 
function(id, argb){
if (id < this.changeableColixMap.length && this.changeableColixMap[id] != 0) this.changeableColixMap[id] = JU.C.getColix(argb);
}, "~N,~N");
Clazz.defineMethod(c$, "getColorArgbOrGray", 
function(colix){
if (colix == 3) return JU.C.getArgb(this.contrastColix);
if (colix < 0) colix = this.changeableColixMap[colix & 2047];
return (this.inGreyscaleMode ? JU.C.getArgbGreyscale(colix) : JU.C.getArgb(colix));
}, "~N");
Clazz.defineMethod(c$, "fixChangeableColix", 
function(colix){
return (colix >= 0 ? colix : (this.changeableColixMap[colix & 2047] | colix & 30720));
}, "~N");
Clazz.defineMethod(c$, "getShades", 
function(colix){
if (colix < 0) colix = this.changeableColixMap[colix & 2047];
return (this.inGreyscaleMode ? this.shader.getShadesG(colix) : this.shader.getShades(colix));
}, "~N");
Clazz.defineMethod(c$, "setGreyscaleMode", 
function(greyscaleMode){
this.inGreyscaleMode = greyscaleMode;
}, "~B");
Clazz.defineMethod(c$, "getSpecularPower", 
function(){
return this.shader.specularPower;
});
Clazz.defineMethod(c$, "setSpecularPower", 
function(val){
if (val < 0) {
this.setSpecularExponent(-val);
return;
}if (this.shader.specularPower == val) return;
this.shader.specularPower = val;
this.shader.intenseFraction = val / 100;
this.shader.flushCaches();
}, "~N");
Clazz.defineMethod(c$, "getSpecularPercent", 
function(){
return this.shader.specularPercent;
});
Clazz.defineMethod(c$, "setSpecularPercent", 
function(val){
if (this.shader.specularPercent == val) return;
this.shader.specularPercent = val;
this.shader.specularFactor = val / 100;
this.shader.flushCaches();
}, "~N");
Clazz.defineMethod(c$, "getSpecularExponent", 
function(){
return this.shader.specularExponent;
});
Clazz.defineMethod(c$, "setSpecularExponent", 
function(val){
if (this.shader.specularExponent == val) return;
this.shader.specularExponent = val;
this.shader.phongExponent = Clazz.doubleToInt(Math.pow(2, val));
this.shader.usePhongExponent = false;
this.shader.flushCaches();
}, "~N");
Clazz.defineMethod(c$, "getPhongExponent", 
function(){
return this.shader.phongExponent;
});
Clazz.defineMethod(c$, "setPhongExponent", 
function(val){
if (this.shader.phongExponent == val && this.shader.usePhongExponent) return;
this.shader.phongExponent = val;
var x = (Math.log(val) / Math.log(2));
this.shader.usePhongExponent = (x != Clazz.floatToInt(x));
if (!this.shader.usePhongExponent) this.shader.specularExponent = Clazz.floatToInt(x);
this.shader.flushCaches();
}, "~N");
Clazz.defineMethod(c$, "getDiffusePercent", 
function(){
return this.shader.diffusePercent;
});
Clazz.defineMethod(c$, "setDiffusePercent", 
function(val){
if (this.shader.diffusePercent == val) return;
this.shader.diffusePercent = val;
this.shader.diffuseFactor = val / 100;
this.shader.flushCaches();
}, "~N");
Clazz.defineMethod(c$, "getAmbientPercent", 
function(){
return this.shader.ambientPercent;
});
Clazz.defineMethod(c$, "setAmbientPercent", 
function(val){
if (this.shader.ambientPercent == val) return;
this.shader.ambientPercent = val;
this.shader.ambientFraction = val / 100;
this.shader.flushCaches();
}, "~N");
Clazz.defineMethod(c$, "getSpecular", 
function(){
return this.shader.specularOn;
});
Clazz.defineMethod(c$, "setSpecular", 
function(val){
if (this.shader.specularOn == val) return;
this.shader.specularOn = val;
this.shader.flushCaches();
}, "~B");
Clazz.defineMethod(c$, "setCel", 
function(val){
this.shader.setCel(val, this.shader.celPower, this.bgcolor);
}, "~B");
Clazz.defineMethod(c$, "getCel", 
function(){
return this.shader.celOn;
});
Clazz.defineMethod(c$, "getCelPower", 
function(){
return this.shader.celPower;
});
Clazz.defineMethod(c$, "setCelPower", 
function(celPower){
this.shader.setCel(this.shader.celOn || this.shader.celPower == 0, celPower, this.bgcolor);
}, "~N");
Clazz.defineMethod(c$, "getLightSource", 
function(){
return this.shader.lightSource;
});
Clazz.defineMethod(c$, "isClipped3", 
function(x, y, z){
return (x < 0 || x >= this.width || y < 0 || y >= this.height || z < this.slab || z > this.depth);
}, "~N,~N,~N");
Clazz.defineMethod(c$, "isClipped", 
function(x, y){
return (x < 0 || x >= this.width || y < 0 || y >= this.height);
}, "~N,~N");
Clazz.overrideMethod(c$, "isInDisplayRange", 
function(x, y){
return (x >= this.displayMinX && x < this.displayMaxX && y >= this.displayMinY && y < this.displayMaxY);
}, "~N,~N");
Clazz.overrideMethod(c$, "isClippedXY", 
function(diameter, x, y){
var r = (diameter + 1) >> 1;
return (x < -r || x >= this.width + r || y < -r || y >= this.height + r);
}, "~N,~N,~N");
Clazz.defineMethod(c$, "isClippedZ", 
function(z){
return (z != -2147483648 && (z < this.slab || z > this.depth));
}, "~N");
Clazz.defineMethod(c$, "clipCode3", 
function(x, y, z){
var code = 0;
if (x < 0) code |= (x < this.displayMinX2 ? -1 : 8);
 else if (x >= this.width) code |= (x > this.displayMaxX2 ? -1 : 4);
if (y < 0) code |= (y < this.displayMinY2 ? -1 : 2);
 else if (y >= this.height) code |= (y > this.displayMaxY2 ? -1 : 1);
if (z < this.slab) code |= 32;
 else if (z > this.depth) code |= 16;
return code;
}, "~N,~N,~N");
Clazz.defineMethod(c$, "clipCode", 
function(z){
var code = 0;
if (z < this.slab) code |= 32;
 else if (z > this.depth) code |= 16;
return code;
}, "~N");
Clazz.defineMethod(c$, "getFont3D", 
function(fontSize){
return JU.Font.createFont3D(0, 0, fontSize, fontSize, 0, this.apiPlatform, this.graphicsForMetrics);
}, "~N");
Clazz.defineMethod(c$, "getFont3DFS", 
function(fontFace, fontSize){
return JU.Font.createFont3D(JU.Font.getFontFaceID(fontFace), 0, fontSize, fontSize, 0, this.apiPlatform, this.graphicsForMetrics);
}, "~S,~N");
Clazz.defineMethod(c$, "getFontFidFS", 
function(fontFace, fontSize){
return this.getFont3DFSS(fontFace, "Bold", fontSize).fid;
}, "~S,~N");
Clazz.defineMethod(c$, "getFont3DFSS", 
function(fontFace, fontStyle, fontSize){
var iStyle = JU.Font.getFontStyleID(fontStyle);
if (iStyle < 0) iStyle = 0;
return JU.Font.createFont3D(JU.Font.getFontFaceID(fontFace), iStyle, fontSize, fontSize, 0, this.apiPlatform, this.graphicsForMetrics);
}, "~S,~S,~N");
Clazz.defineMethod(c$, "getFont3DScaled", 
function(font, scale){
var newScale = font.fontSizeNominal * scale;
return (newScale == font.fontSize ? font : JU.Font.createFont3D(font.idFontFace, font.idFontStyle, newScale, font.fontSizeNominal, font.fontSizeAngstroms, this.apiPlatform, this.graphicsForMetrics));
}, "JU.Font,~N");
Clazz.defineMethod(c$, "getFontFidI", 
function(fontSize){
return this.getFont3D(fontSize).fid;
}, "~N");
Clazz.defineMethod(c$, "getFont3DCurrent", 
function(){
return this.currentFont;
});
Clazz.defineMethod(c$, "setFont", 
function(font3d){
}, "JU.Font");
Clazz.defineMethod(c$, "setFontBold", 
function(fontFace, fontSize){
this.setFont(this.getFont3DFSS(fontFace, "Bold", fontSize));
}, "~S,~N");
Clazz.defineMethod(c$, "setBackgroundTransparent", 
function(TF){
}, "~B");
Clazz.defineMethod(c$, "setBackgroundArgb", 
function(argb){
this.bgcolor = argb;
this.setCel(this.shader.celOn);
}, "~N");
Clazz.defineMethod(c$, "setBackgroundImage", 
function(image){
this.backgroundImage = image;
}, "~O");
Clazz.defineMethod(c$, "setWindowParameters", 
function(width, height, antialias){
this.setWinParams(width, height, antialias);
}, "~N,~N,~B");
Clazz.defineMethod(c$, "setWinParams", 
function(width, height, antialias){
this.newWindowWidth = width;
this.newWindowHeight = height;
this.newAntialiasing = antialias;
}, "~N,~N,~B");
Clazz.defineMethod(c$, "setNewWindowParametersForExport", 
function(){
this.windowWidth = this.newWindowWidth;
this.windowHeight = this.newWindowHeight;
this.setWidthHeight(false);
});
Clazz.defineMethod(c$, "setWidthHeight", 
function(isAntialiased){
this.width = this.windowWidth;
this.height = this.windowHeight;
if (isAntialiased) {
this.width <<= 1;
this.height <<= 1;
}this.xLast = this.width - 1;
this.yLast = this.height - 1;
this.displayMinX = -(this.width >> 1);
this.displayMaxX = this.width - this.displayMinX;
this.displayMinY = -(this.height >> 1);
this.displayMaxY = this.height - this.displayMinY;
this.displayMinX2 = this.displayMinX << 2;
this.displayMaxX2 = this.displayMaxX << 2;
this.displayMinY2 = this.displayMinY << 2;
this.displayMaxY2 = this.displayMaxY << 2;
this.ht3 = this.height * 3;
this.bufferSize = this.width * this.height;
}, "~B");
Clazz.defineMethod(c$, "beginRendering", 
function(stereoRotationMatrix, translucentMode, isImageWrite, renderLow){
}, "JU.M3,~B,~B,~B");
Clazz.defineMethod(c$, "endRendering", 
function(){
});
Clazz.defineMethod(c$, "snapshotAnaglyphChannelBytes", 
function(){
});
Clazz.defineMethod(c$, "getScreenImage", 
function(isImageWrite){
return null;
}, "~B");
Clazz.defineMethod(c$, "releaseScreenImage", 
function(){
});
Clazz.defineMethod(c$, "applyAnaglygh", 
function(stereoMode, stereoColors){
}, "J.c.STER,~A");
Clazz.defineMethod(c$, "setPass2", 
function(antialias){
return false;
}, "~B");
Clazz.defineMethod(c$, "destroy", 
function(){
});
Clazz.defineMethod(c$, "clearFontCache", 
function(){
});
Clazz.defineMethod(c$, "drawQuadrilateralBits", 
function(jmolRenderer, colix, screenA, screenB, screenC, screenD){
jmolRenderer.drawLineBits(colix, colix, screenA, screenB);
jmolRenderer.drawLineBits(colix, colix, screenB, screenC);
jmolRenderer.drawLineBits(colix, colix, screenC, screenD);
jmolRenderer.drawLineBits(colix, colix, screenD, screenA);
}, "J.api.JmolRendererInterface,~N,JU.P3,JU.P3,JU.P3,JU.P3");
Clazz.defineMethod(c$, "drawTriangleBits", 
function(renderer, screenA, colixA, screenB, colixB, screenC, colixC, check){
if ((check & 1) == 1) renderer.drawLineBits(colixA, colixB, screenA, screenB);
if ((check & 2) == 2) renderer.drawLineBits(colixB, colixC, screenB, screenC);
if ((check & 4) == 4) renderer.drawLineBits(colixC, colixA, screenC, screenA);
}, "J.api.JmolRendererInterface,JU.P3,~N,JU.P3,~N,JU.P3,~N,~N");
Clazz.defineMethod(c$, "plotImage", 
function(x, y, z, image, jmolRenderer, bgcolix, width, height){
}, "~N,~N,~N,~O,J.api.JmolRendererInterface,~N,~N,~N");
Clazz.defineMethod(c$, "plotText", 
function(x, y, z, colorArgbOrGray, bgColor, text, font3d, jmolRenderer){
}, "~N,~N,~N,~N,~N,~S,JU.Font,J.api.JmolRendererInterface");
Clazz.defineMethod(c$, "renderBackground", 
function(jmolRenderer){
}, "J.api.JmolRendererInterface");
Clazz.defineMethod(c$, "setColor", 
function(argb){
this.argbCurrent = this.argbNoisyUp = this.argbNoisyDn = argb;
}, "~N");
Clazz.defineMethod(c$, "setC", 
function(colix){
return true;
}, "~N");
Clazz.defineMethod(c$, "isDirectedTowardsCamera", 
function(normix){
return (normix < 0) || (this.transformedVectors[normix].z > 0);
}, "~N");
c$.roundInt = Clazz.defineMethod(c$, "roundInt", 
function(a){
{
return a;
}}, "~N");
Clazz.defineMethod(c$, "clear", 
function(){
});
Clazz.overrideMethod(c$, "renderAllStrings", 
function(jmolRenderer){
}, "~O");
Clazz.defineMethod(c$, "addRenderer", 
function(tok){
}, "~N");
c$.getHermiteList = Clazz.defineMethod(c$, "getHermiteList", 
function(tension, p0, p1, p2, p3, p4, list, index0, n, isPt){
var nPoints = n + 1;
var fnPoints = n - 1;
var x1 = p1.x;
var y1 = p1.y;
var z1 = p1.z;
var x2 = p2.x;
var y2 = p2.y;
var z2 = p2.z;
var xT1 = ((x2 - p0.x) * tension) / 8;
var yT1 = ((y2 - p0.y) * tension) / 8;
var zT1 = ((z2 - p0.z) * tension) / 8;
var xT2 = ((p3.x - x1) * tension) / 8;
var yT2 = ((p3.y - y1) * tension) / 8;
var zT2 = ((p3.z - z1) * tension) / 8;
var xT3 = ((p4.x - x2) * tension) / 8;
var yT3 = ((p4.y - y2) * tension) / 8;
var zT3 = ((p4.z - z2) * tension) / 8;
list[index0] = p1;
for (var i = 0; i < nPoints; i++) {
var s = i / fnPoints;
if (i == nPoints - 1) {
x1 = x2;
y1 = y2;
z1 = z2;
x2 = p3.x;
y2 = p3.y;
z2 = p3.z;
xT1 = xT2;
yT1 = yT2;
zT1 = zT2;
xT2 = xT3;
yT2 = yT3;
zT2 = zT3;
s -= 1;
}var s2 = s * s;
var s3 = s2 * s;
var h1 = 2 * s3 - 3 * s2 + 1;
var h2 = -2 * s3 + 3 * s2;
var h3 = s3 - 2 * s2 + s;
var h4 = s3 - s2;
var x = (h1 * x1 + h2 * x2 + h3 * xT1 + h4 * xT2);
var y = (h1 * y1 + h2 * y2 + h3 * yT1 + h4 * yT2);
var z = (h1 * z1 + h2 * z2 + h3 * zT1 + h4 * zT2);
list[index0 + i] = (isPt ? JU.P3.new3(x, y, z) : JU.V3.new3(x, y, z));
}
}, "~N,JU.T3,JU.T3,JU.T3,JU.T3,JU.T3,~A,~N,~N,~B");
Clazz.defineMethod(c$, "setTextPosition", 
function(y){
this.textY = y;
}, "~N");
Clazz.defineMethod(c$, "getTextPosition", 
function(){
return this.textY;
});
Clazz.defineMethod(c$, "getTransformedVertexVectors", 
function(){
return this.transformedVectors;
});
Clazz.overrideMethod(c$, "drawLinePixels", 
function(sA, sB, z, zslab){
return;
}, "JU.P3i,JU.P3i,~N,~N");
c$.getSlabObjectType = Clazz.defineMethod(c$, "getSlabObjectType", 
function(tok, data, isCap, colorData){
return  Clazz.newArray(-1, [Integer.$valueOf(tok), data, Boolean.$valueOf(isCap), colorData]);
}, "~N,~O,~B,~O");
c$.getSlabWithinRange = Clazz.defineMethod(c$, "getSlabWithinRange", 
function(min, max){
return  Clazz.newArray(-1, [Integer.$valueOf(1073742114),  Clazz.newArray(-1, [Float.$valueOf(min), Float.$valueOf(max)]), Boolean.FALSE, null]);
}, "~N,~N");
c$.normixCount = JU.Normix.getNormixCount();
});
;//5.0.1-v7 Mon Aug 17 10:07:10 MDT 2026
