Clazz.declarePackage("J.io");
Clazz.load(["J.api.JmolFilesReaderInterface"], "J.io.FilesReader", ["JU.Rdr", "J.api.Interface", "J.io.FileReader", "JU.Logger"], function(){
var c$ = Clazz.decorateAsClass(function(){
this.fm = null;
this.vwr = null;
this.fullPathNamesIn = null;
this.namesAsGivenIn = null;
this.fileTypesIn = null;
this.atomSetCollection = null;
this.dataReaders = null;
this.htParams = null;
this.isAppend = false;
Clazz.instantialize(this, arguments);}, J.io, "FilesReader", null, J.api.JmolFilesReaderInterface);
/*LV!1824 unnec constructor*/Clazz.overrideMethod(c$, "set", 
function(fileManager, vwr, name, nameAsGiven, types, readers, htParams, isAppend){
this.fm = fileManager;
this.vwr = vwr;
this.fullPathNamesIn = name;
this.namesAsGivenIn = nameAsGiven;
this.fileTypesIn = types;
this.dataReaders = readers;
this.htParams = htParams;
this.isAppend = isAppend;
}, "JV.FileManager,JV.Viewer,~A,~A,~A,~A,java.util.Map,~B");
Clazz.overrideMethod(c$, "run", 
function(){
if (!this.isAppend && this.vwr.displayLoadErrors) this.vwr.zap(false, true, false);
var getReadersOnly = !this.vwr.displayLoadErrors;
this.atomSetCollection = this.vwr.getModelAdapter().getAtomSetCollectionReaders(this, this.fullPathNamesIn, this.fileTypesIn, this.htParams, getReadersOnly);
this.dataReaders = null;
if (getReadersOnly && !((typeof(this.atomSetCollection)=='string'))) {
this.atomSetCollection = this.vwr.getModelAdapter().getAtomSetCollectionFromSet(this.atomSetCollection, null, this.htParams);
}if ((typeof(this.atomSetCollection)=='string')) {
JU.Logger.error("file ERROR: " + this.atomSetCollection);
return;
}if (!this.isAppend && !this.vwr.displayLoadErrors) this.vwr.zap(false, true, false);
this.fm.setFileInfo( Clazz.newArray(-1, [this.dataReaders == null ? this.fullPathNamesIn[0] : "String[]"]));
});
Clazz.overrideMethod(c$, "getBufferedReaderOrBinaryDocument", 
function(i, forceInputStream){
if (this.dataReaders != null) return (forceInputStream ? null : this.dataReaders[i].getBufferedReader());
var name = this.fullPathNamesIn[i];
if (name.contains("#_DOCACHE_")) return J.io.FileReader.getChangeableReader(this.vwr, this.namesAsGivenIn[i], name);
var t = this.fm.getUnzippedReaderOrStreamFromName(name, null, false, forceInputStream, false, true, this.htParams);
if (Clazz.instanceOf(t,"java.io.BufferedInputStream") && JU.Rdr.isZipS(t)) {
var zipDirectory = this.fm.getZipDirectory(name, true, true);
t = this.fm.getBufferedInputStreamOrErrorMessageFromName(name, this.fullPathNamesIn[i], false, false, null, false, true);
t = this.fm.getJzu().getAtomSetCollectionOrBufferedReaderFromZip(this.vwr, t, name, zipDirectory, this.htParams, 1, true);
}return (Clazz.instanceOf(t,"java.io.BufferedInputStream") ? (J.api.Interface.getInterface("JU.BinaryDocument", this.vwr, "file")).setStream(t, true) : Clazz.instanceOf(t,"java.io.BufferedReader") || Clazz.instanceOf(t,"javajs.api.GenericBinaryDocument") ? t : t == null ? "error opening:" + this.namesAsGivenIn[i] : t);
}, "~N,~B");
Clazz.overrideMethod(c$, "getAtomSetCollection", 
function(){
return this.atomSetCollection;
});
});
;//5.0.1-v7 Mon Aug 17 10:07:10 MDT 2026
