Clazz.declarePackage("J.adapter.readers.xml");
Clazz.load(["J.adapter.smarter.AtomSetCollectionReader", "JU.SB"], "J.adapter.readers.xml.XmlReader", ["java.util.Hashtable", "J.adapter.smarter.AtomSetCollection", "$.Resolver", "J.api.Interface", "JU.Logger"], function(){
var c$ = Clazz.decorateAsClass(function(){
this.thisAtom = null;
this.parent = null;
this.atts = null;
this.thisReader = null;
this.keepChars = false;
this.chars = null;
this.domObj = null;
this.attribs = null;
if (!Clazz.isClassDefined("J.adapter.readers.xml.XmlReader.NVPair")) {
J.adapter.readers.xml.XmlReader.$XmlReader$NVPair$ ();
}
Clazz.instantialize(this, arguments);}, J.adapter.readers.xml, "XmlReader", J.adapter.smarter.AtomSetCollectionReader);
Clazz.prepareFields (c$, function(){
this.parent = this;
this.chars = JU.SB.newN(2000);
this.domObj =  new Array(1);
});
Clazz.overrideMethod(c$, "initializeReader", 
function(){
this.atts =  new java.util.Hashtable();
this.setMyError(this.parseXML());
this.continuing = false;
});
Clazz.defineMethod(c$, "setMyError", 
function(err){
if (err != null && (this.asc == null || this.asc.errorMessage == null)) {
this.asc =  new J.adapter.smarter.AtomSetCollection("xml", this, null, null);
this.asc.errorMessage = err;
}}, "~S");
Clazz.defineMethod(c$, "parseXML", 
function(){
var saxReader = null;
{
}return this.selectReaderAndGo(saxReader);
});
Clazz.defineMethod(c$, "selectReaderAndGo", 
function(saxReader){
var className = null;
var pt = this.readerName.indexOf("(");
var name = (pt < 0 ? this.readerName : this.readerName.substring(0, pt));
className = J.adapter.smarter.Resolver.getReaderClassBase(name);
if (className.equals(this.getClass().getName())) {
this.thisReader = this.parent = this;
} else {
this.asc =  new J.adapter.smarter.AtomSetCollection(this.readerName, this, null, null);
if ((this.thisReader = this.getInterface(className)) == null) return "File reader was not found: " + className;
}try {
this.thisReader.processXml(this, saxReader);
} catch (e) {
if (Clazz.exceptionOf(e, Exception)){
e.printStackTrace();
return "Error reading XML: " + (e.getMessage());
} else {
throw e;
}
}
return null;
}, "~O");
Clazz.defineMethod(c$, "processXml", 
function(parent, saxReader){
this.processXml2(parent, saxReader);
}, "J.adapter.readers.xml.XmlReader,~O");
Clazz.defineMethod(c$, "processXml2", 
function(parent, saxReader){
this.parent = parent;
if (parent !== this) {
this.asc = parent.asc;
this.reader = parent.reader;
this.atts = parent.atts;
}var rdr = this.previewXML(this.reader);
if (saxReader == null) {
this.attribs =  new Array(1);
this.domObj =  new Array(1);
var o = "";
var data = null;
{
o = rdr.lock.lock;
if (o.$in) data = o.$in.buf;
}if (Clazz.instanceOf(o,"java.io.BufferedInputStream")) o =  String.instantialize(data, "utf-8");
var isjs = false;
{
isjs = true;
}if (isjs) {
this.domObj[0] = this.createDomNodeJS("xmlReader", o);
this.walkDOMTree();
this.createDomNodeJS("xmlReader", null);
}} else {
(J.api.Interface.getOption("adapter.readers.xml.XmlHandler", this.vwr, "file")).parseXML(this, saxReader, rdr);
}}, "J.adapter.readers.xml.XmlReader,~O");
Clazz.defineMethod(c$, "previewXML", 
function(reader){
return reader;
}, "java.io.BufferedReader");
Clazz.defineMethod(c$, "createDomNodeJS", 
function(id, data){
var applet = (this.parent == null ? this : this.parent).vwr.html5Applet;
var d = null;
{
if (!data)
return null;
if (data.indexOf("<?") == 0)
data = data.substring(data.indexOf("<", 1));
if (data.indexOf("/>") >= 0) {
var D = data.split("/>");
for (var i = D.length - 1; --i >= 0;) {
var s = D[i];
var pt = s.lastIndexOf("<") + 1;
var pt2 = pt;
var len = s.length;
var name = "";
while (++pt2 < len) {
if (" \t\n\r".indexOf(s.charAt(pt2))>= 0) {
var name = s.substring(pt, pt2);
D[i] = s + "></"+name+">";
break;
}
}
}
data = D.join('');
}
d = document.createElement("_xml");
d.innerHTML = data;
}return d;
}, "~S,~O");
Clazz.overrideMethod(c$, "applySymmetryAndSetTrajectory", 
function(){
try {
if (this.parent == null || this.parent === this) this.applySymTrajASCR();
 else this.parent.applySymmetryAndSetTrajectory();
} catch (e) {
if (Clazz.exceptionOf(e, Exception)){
JU.Logger.error("applySymmetry failed: " + e);
} else {
throw e;
}
}
});
Clazz.overrideMethod(c$, "processDOM", 
function(DOMNode){
this.domObj =  Clazz.newArray(-1, [DOMNode]);
this.setMyError(this.selectReaderAndGo(null));
}, "~O");
Clazz.defineMethod(c$, "processStartElement", 
function(localName, nodeName){
}, "~S,~S");
Clazz.defineMethod(c$, "setKeepChars", 
function(TF){
this.keepChars = TF;
this.chars.setLength(0);
}, "~B");
Clazz.defineMethod(c$, "processEndElement", 
function(localName){
}, "~S");
Clazz.defineMethod(c$, "walkDOMTree", 
function(){
var localName;
{
localName = "nodeName";
}var nodeName = (this.jsObjectGetMember(this.domObj, localName));
localName = this.fixLocal(nodeName);
if (localName == null) return;
if (localName.equals("#text")) {
if (this.keepChars) this.chars.append(this.jsObjectGetMember(this.domObj, "data"));
return;
}localName = localName.toLowerCase();
nodeName = nodeName.toLowerCase();
this.attribs[0] = this.jsObjectGetMember(this.domObj, "attributes");
this.getDOMAttributesA(this.attribs);
this.processStartElement(localName, nodeName);
var haveChildren = false;
{
haveChildren = this.domObj[0].hasChildNodes;
}if (haveChildren) {
var nextNode = this.jsObjectGetMember(this.domObj, "firstChild");
while (nextNode != null) {
this.domObj[0] = nextNode;
this.walkDOMTree();
this.domObj[0] = nextNode;
nextNode = this.jsObjectGetMember(this.domObj, "nextSibling");
}
}this.processEndElement(localName);
});
Clazz.defineMethod(c$, "fixLocal", 
function(name){
{
var pt = (name== null ? -1 : name.indexOf(":")); return (pt >=
0 ? name.substring(pt+1) : name);
}}, "~S");
Clazz.defineMethod(c$, "getDOMAttributesA", 
function(attributes){
this.atts.clear();
if (attributes == null) return;
var nodes = null;
{
nodes = attributes[0];
}for (var i = nodes.length; --i >= 0; ) this.atts.put(this.fixLocal(nodes[i].name).toLowerCase(), nodes[i].value);

}, "~A");
Clazz.defineMethod(c$, "jsObjectGetMember", 
function(jsObject, name){
{
return jsObject[0][name];
}}, "~A,~S");
Clazz.defineMethod(c$, "endDocument", 
function(){
});
Clazz.overrideMethod(c$, "finalizeSubclassReader", 
function(){
if (this.thisReader != null && this.thisReader !== this) this.thisReader.finalizeSubclassReader();
this.thisReader = null;
});
c$.$XmlReader$NVPair$ = function(){
/*if4*/;(function(){
var c$ = Clazz.decorateAsClass(function(){
Clazz.prepareCallback(this, arguments);
this.name = null;
this.value = null;
Clazz.instantialize(this, arguments);}, J.adapter.readers.xml.XmlReader, "NVPair", null);
/*eoif4*/})();
};
});
;//5.0.1-v7 Mon Aug 17 10:07:10 MDT 2026
