Clazz.declarePackage("J.jvxl.readers");
Clazz.load(["J.jvxl.readers.SurfaceReader"], "J.jvxl.readers.SurfaceFileReader", ["JU.PT", "$.Rdr", "J.api.Interface"], function(){
var c$ = Clazz.decorateAsClass(function(){
this.br = null;
this.binarydoc = null;
this.out = null;
this.line = null;
this.next = null;
Clazz.instantialize(this, arguments);}, J.jvxl.readers, "SurfaceFileReader", J.jvxl.readers.SurfaceReader);
Clazz.prepareFields (c$, function(){
this.next =  Clazz.newIntArray (1, 0);
});
Clazz.makeConstructor(c$, 
function(){
Clazz.superConstructor (this, J.jvxl.readers.SurfaceFileReader, []);
});
Clazz.defineMethod(c$, "setStream", 
function(fileName, isBigEndian){
if (fileName == null) this.binarydoc.setStream(null, isBigEndian);
 else try {
if (Clazz.instanceOf(this.br,"JU.Rdr.StreamReader")) {
var stream = (this.br).getStream();
stream.reset();
this.binarydoc.setStream(stream, true);
}} catch (e) {
if (Clazz.exceptionOf(e, Exception)){
System.out.println("BCifDensityReader " + e);
this.binarydoc.setStream(this.sg.atomDataServer.getBufferedInputStream(fileName), isBigEndian);
} else {
throw e;
}
}
}, "~S,~B");
Clazz.overrideMethod(c$, "init", 
function(sg){
this.initSR(sg);
}, "J.jvxl.readers.SurfaceGenerator");
Clazz.defineMethod(c$, "init2", 
function(sg, br){
this.init2SFR(sg, br);
}, "J.jvxl.readers.SurfaceGenerator,java.io.BufferedReader");
Clazz.defineMethod(c$, "init2SFR", 
function(sg, br){
this.br = br;
this.init(sg);
}, "J.jvxl.readers.SurfaceGenerator,java.io.BufferedReader");
Clazz.defineMethod(c$, "newBinaryDocument", 
function(){
return J.api.Interface.getInterface("JU.BinaryDocument", this.sg.atomDataServer, "file");
});
Clazz.overrideMethod(c$, "setOutputChannel", 
function(out){
if (this.binarydoc == null) this.out = out;
 else this.sg.setOutputChannel(this.binarydoc, out);
}, "JU.OC");
Clazz.overrideMethod(c$, "closeReader", 
function(){
this.closeReaderSFR();
});
Clazz.defineMethod(c$, "closeReaderSFR", 
function(){
if (this.br != null) try {
this.br.close();
} catch (e) {
if (Clazz.exceptionOf(e,"java.io.IOException")){
} else {
throw e;
}
}
if (this.out != null) this.out.closeChannel();
if (this.binarydoc != null) this.binarydoc.close();
});
Clazz.overrideMethod(c$, "discardTempData", 
function(discardAll){
this.closeReader();
this.discardTempDataSR(discardAll);
}, "~B");
Clazz.defineMethod(c$, "getTokens", 
function(){
return JU.PT.getTokensAt(this.line, 0);
});
Clazz.defineMethod(c$, "parseFloat", 
function(){
return JU.PT.parseFloatNext(this.line, this.next);
});
Clazz.defineMethod(c$, "parseFloatStr", 
function(s){
this.next[0] = 0;
return JU.PT.parseFloatNext(s, this.next);
}, "~S");
Clazz.defineMethod(c$, "parseFloatRange", 
function(s, iStart, iEnd){
this.next[0] = iStart;
return JU.PT.parseFloatRange(s, iEnd, this.next);
}, "~S,~N,~N");
Clazz.defineMethod(c$, "parseInt", 
function(){
return JU.PT.parseIntNext(this.line, this.next);
});
Clazz.defineMethod(c$, "parseIntStr", 
function(s){
this.next[0] = 0;
return JU.PT.parseIntNext(s, this.next);
}, "~S");
Clazz.defineMethod(c$, "parseIntNext", 
function(s){
return JU.PT.parseIntNext(s, this.next);
}, "~S");
Clazz.defineMethod(c$, "parseFloatArrayStr", 
function(s){
this.next[0] = 0;
return JU.PT.parseFloatArrayNext(s, this.next, null, null, null);
}, "~S");
Clazz.defineMethod(c$, "parseFloatArray", 
function(a, strStart, strEnd){
return JU.PT.parseFloatArrayNext(this.line, this.next, a, strStart, strEnd);
}, "~A,~S,~S");
Clazz.defineMethod(c$, "getQuotedStringNext", 
function(){
return JU.PT.getQuotedStringNext(this.line, this.next);
});
Clazz.defineMethod(c$, "skipTo", 
function(info, what){
if (info != null) while (this.rd().indexOf(info) < 0) {
}
if (what != null) this.next[0] = this.line.indexOf(what) + what.length + 2;
}, "~S,~S");
Clazz.defineMethod(c$, "rd", 
function(){
this.line = this.br.readLine();
if (this.line != null) {
this.nBytes += this.line.length;
if (this.out != null) {
var b = this.line.getBytes();
this.out.write(b, 0, b.length);
this.out.writeByteAsInt(0x0A);
}}return this.line;
});
});
;//5.0.1-v7 Mon Aug 17 10:07:10 MDT 2026
