# Jmol.mnu Jmol version 14.1.8_dev_2014.01.28  2014-01-28 17:17:

# Part I -- Menu Structure
# ------------------------

@COLOR = black white red orange yellow green cyan blue indigo violet
@AXESCOLOR = gray salmon maroon olive slateblue gold orchid
popupMenu = FRAMESbyModelComputedMenu configurationComputedMenu - selectMenuText viewMenu renderMenu colorMenu - surfaceMenu FILEUNITMenu - sceneComputedMenu zoomMenu spinMenu VIBRATIONMenu spectraMenu FRAMESanimateMenu - measureMenu pickingMenu - showConsole JSConsole showMenu fileMenu computationMenu - languageComputedMenu aboutComputedMenu
selectMenuText | Select ({0}) = hideNotSelectedCB showSelectionsCB - selectAll selectNone invertSelection - elementsComputedMenu SYMMETRYSelectComputedMenu - PDBproteinMenu PDBnucleicMenu PDBheteroMenu PDBcarboMenu PDBnoneOfTheAbove
PDBproteinMenu | Protein = PDBaaResiduesComputedMenu - allProtein proteinBackbone proteinSideChains - polar nonpolar - positiveCharge negativeCharge noCharge
PDBcarboMenu | Carbohydrate = PDBcarboResiduesComputedMenu - allCarbo
PDBnucleicMenu | Nucleic = PDBnucleicResiduesComputedMenu - allNucleic nucleicBackbone nucleicBases - DNA RNA - atPairs auPairs gcPairs
PDBheteroMenu | Hetero = PDBheteroComputedMenu - allHetero Solvent Water - Ligand exceptWater nonWaterSolvent
viewMenu | View = new best front left right top bottom back
renderMenu | Style = perspectiveDepthCB showBoundBoxCB showUNITCELLCB showAxesCB stereoMenu - renderSchemeMenu - atomMenu labelMenu bondMenu hbondMenu ssbondMenu - PDBstructureMenu [set_axes]Menu [set_boundbox]Menu [set_UNITCELL]Menu
renderSchemeMenu | Scheme = renderCpkSpacefill renderBallAndStick renderSticks renderWireframe PDBrenderCartoonsOnly PDBrenderTraceOnly
atomMenu | Atoms = showHydrogensCB - atomNone - atom15 atom20 atom25 atom50 atom75 atom100
bondMenu | Bonds = bondNone bondWireframe - bond100 bond150 bond200 bond250 bond300
hbondMenu | Hydrogen Bonds = hbondCalc hbondNone hbondWireframe - PDBhbondSidechain PDBhbondBackbone - hbond100 hbond150 hbond200 hbond250 hbond300
ssbondMenu | Disulfide Bonds = ssbondNone ssbondWireframe - PDBssbondSidechain PDBssbondBackbone - ssbond100 ssbond150 ssbond200 ssbond250 ssbond300
PDBstructureMenu | Structures = structureNone - backbone cartoon cartoonRockets ribbons rockets strands trace
VIBRATIONvectorMenu | Vectors = vectorOff vectorOn vibScale20 vibScale05 vector3 vector005 vector01 - vectorScale02 vectorScale05 vectorScale1 vectorScale2 vectorScale5
stereoMenu | Stereographic = stereoNone stereoRedCyan stereoRedBlue stereoRedGreen stereoCrossEyed stereoWallEyed
labelMenu | Labels = labelNone - labelSymbol labelName labelNumber - labelPositionMenu
labelPositionMenu | Position Label on Atom = labelCentered labelUpperRight labelLowerRight labelUpperLeft labelLowerLeft
colorMenu | Color = colorrasmolCB - [color_atoms]Menu [color_bonds]Menu [color_hbonds]Menu [color_ssbonds]Menu colorPDBStructuresMenu [color_isosurface]Menu - [color_labels]Menu [color_vectors]Menu - [color_axes]Menu [color_boundbox]Menu [color_UNITCELL]Menu [color_background]Menu
[color_atoms]Menu | Atoms = schemeMenu - @COLOR - opaque translucent
[color_bonds]Menu | Bonds = none - @COLOR - opaque translucent
[color_hbonds]Menu | Hydrogen Bonds = none - @COLOR - opaque translucent
[color_ssbonds]Menu | Disulfide Bonds = none - @COLOR - opaque translucent
[color_labels]Menu | Labels = none - @COLOR - opaque translucent
[color_vectors]Menu | Vectors = none - @COLOR - opaque translucent
[color_backbone]Menu | Backbone = none - schemeMenu - @COLOR - opaque translucent
[color_cartoon]sMenu | Cartoon = none - schemeMenu - @COLOR - opaque translucent
[color_ribbon]sMenu | Ribbons = none - schemeMenu - @COLOR - opaque translucent
[color_rockets]Menu | Rockets = none - schemeMenu - @COLOR - opaque translucent
[color_strands]Menu | Strands = none - schemeMenu - @COLOR - opaque translucent
[color_trace]Menu | Trace = none - schemeMenu - @COLOR - opaque translucent
[color_background]Menu | Background = @COLOR
[color_isosurface]Menu | Surfaces = @COLOR - opaque translucent
[color_axes]Menu | Axes = @AXESCOLOR
[color_boundbox]Menu | Boundbox = @AXESCOLOR
[color_UNITCELL]Menu | Unit cell = @AXESCOLOR
colorPDBStructuresMenu | Structures = [color_backbone]Menu [color_cartoon]sMenu [color_ribbon]sMenu [color_rockets]Menu [color_strands]Menu [color_trace]Menu
schemeMenu | By Scheme = cpk - formalcharge partialcharge#CHARGE - altloc#PDB amino#PDB chain#PDB group#PDB molecule monomer#PDB shapely#PDB structure#PDB relativeTemperature#BFACTORS fixedTemperature#BFACTORS
zoomMenu | Zoom = zoom50 zoom100 zoom150 zoom200 zoom400 zoom800 - zoomIn zoomOut
spinMenu | Spin = spinOn spinOff - [set_spin_X]Menu [set_spin_Y]Menu [set_spin_Z]Menu - [set_spin_FPS]Menu
VIBRATIONMenu | Vibration = vibrationOff vibrationOn vibration20 vibration05 VIBRATIONvectorMenu
spectraMenu | Spectra = hnmrMenu cnmrMenu
FRAMESanimateMenu | Animation = animModeMenu - play pause resume stop - nextframe prevframe rewind - playrev restart - FRAMESanimFpsMenu
FRAMESanimFpsMenu | Set FPS = animfps5 animfps10 animfps20 animfps30 animfps50
measureMenu | Measurements = showMeasurementsCB - measureOff measureDistance measureAngle measureTorsion PDBmeasureSequence - measureDelete measureList - distanceNanometers distanceAngstroms distancePicometers
pickingMenu | Set picking = pickOff pickCenter pickIdent pickLabel pickAtom pickMolecule pickElement PDBpickChain PDBpickGroup SYMMETRYpickSite pickSpin
computationMenu | Computation = minimize modelkit
showMenu | Show = showHistory showFile showFileHeader - showOrient showMeasure - showSpacegroup showState SYMMETRYshowSymmetry UNITCELLshow - showIsosurface showMo - extractMOL
fileMenu | File = SIGNEDloadFile SIGNEDloadUrl SIGNEDloadPdb SIGNEDloadScript - reload SIGNEDloadFileUnitCell - writeFileTextVARIABLE writeState writeHistory SIGNEDwriteJmol SIGNEDwriteIsosurface - SIGNEDJAVAcaptureMenuSPECIAL - SIGNEDJAVAwriteGif SIGNEDNOGLwriteJpg SIGNEDNOGLwritePng SIGNEDNOGLwritePngJmol SIGNEDJAVAwritePovray - SIGNEDJAVAwriteVrml SIGNEDJAVAwriteX3d SIGNEDJAVAwriteIdtf SIGNEDJAVAwriteMaya
SIGNEDJAVAcaptureMenuSPECIAL | Capture = SIGNEDJAVAcaptureRock SIGNEDJAVAcaptureSpin - SIGNEDJAVAcaptureBegin SIGNEDJAVAcaptureEnd SIGNEDJAVAcaptureOff SIGNEDJAVAcaptureOn SIGNEDJAVAcaptureFpsSPECIAL SIGNEDJAVAcaptureLoopingSPECIAL
[set_spin_X]Menu | Set X Rate = s0 s5 s10 s20 s30 s40 s50
[set_spin_Y]Menu | Set Y Rate = s0 s5 s10 s20 s30 s40 s50
[set_spin_Z]Menu | Set Z Rate = s0 s5 s10 s20 s30 s40 s50
[set_spin_FPS]Menu | Set FPS = s0 s5 s10 s20 s30 s40 s50
animModeMenu | Animation Mode = onceThrough palindrome loop
surfaceMenu | Surfaces = surfDots surfVDW surfSolventAccessible14 surfSolvent14 surfMolecular CHARGEsurf2MEP CHARGEsurfMEP surfMoComputedMenuText - surfOpaque surfTranslucent surfOff
FILEUNITMenu | Symmetry = SYMMETRYShowComputedMenu SYMMETRYhide FILEMOLload FILEUNITone FILEUNITnine FILEUNITnineRestricted FILEUNITninePoly
[set_axes]Menu | Axes = off#axes dotted - byPixelMenu byAngstromMenu
[set_boundbox]Menu | Boundbox = off#axes dotted - byPixelMenu byAngstromMenu
[set_UNITCELL]Menu | Unit cell = off#axes dotted - byPixelMenu byAngstromMenu
byPixelMenu | Pixel Width = 1p 3p 5p 10p
byAngstromMenu | Angstrom Width = 10a 20a 25a 50a 100a
aboutComputedMenu | About... = - 


# Part II -- Key Definitions
# --------------------------

colorrasmolCB | RasMol Colors = 
hideNotSelectedCB | Display Selected Only = set hideNotSelected true | set hideNotSelected false; hide(none)
perspectiveDepthCB | Perspective Depth = 
showAxesCB | Axes = set showAxes true | set showAxes false;set axesMolecular
showBoundBoxCB | Boundbox = 
showHydrogensCB | Show Hydrogens = 
showMeasurementsCB | Show Measurements = 
showSelectionsCB | Selection Halos = 
showUNITCELLCB | Unit cell = 
selectAll | All = SELECT all
selectNone | None = SELECT none
invertSelection | Invert Selection = SELECT not selected
allProtein | All = SELECT protein
proteinBackbone | Backbone = SELECT protein and backbone
proteinSideChains | Side Chains = SELECT protein and not backbone
polar | Polar Residues = SELECT protein and polar
nonpolar | Nonpolar Residues = SELECT protein and not polar
positiveCharge | Basic Residues (+) = SELECT protein and basic
negativeCharge | Acidic Residues (-) = SELECT protein and acidic
noCharge | Uncharged Residues = SELECT protein and not (acidic,basic)
allCarbo | All = SELECT carbohydrate
allNucleic | All = SELECT nucleic
DNA | DNA = SELECT dna
RNA | RNA = SELECT rna
nucleicBackbone | Backbone = SELECT nucleic and backbone
nucleicBases | Bases = SELECT nucleic and not backbone
atPairs | AT pairs = SELECT a,t
gcPairs | GC pairs = SELECT g,c
auPairs | AU pairs = SELECT a,u
A = SELECT a
C = SELECT c
G = SELECT g
T = SELECT t
U = SELECT u
allHetero | All PDB "HETATM" = SELECT hetero
Solvent | All Solvent = SELECT solvent
Water | All Water = SELECT water
nonWaterSolvent | Nonaqueous Solvent (solvent and not water) = SELECT solvent and not water
exceptWater | Nonaqueous HETATM (hetero and not water) = SELECT hetero and not water
Ligand | Ligand = SELECT ligand
PDBnoneOfTheAbove | None of the above = SELECT not(hetero,protein,nucleic,carbohydrate)
new | New = rotate x 30
best | Best = rotate best -1.0
front | Front = if (showBoundBox or showUnitcell) {moveto 2.0 front;delay 1} else {boundbox on;moveto 2.0 front;delay 1;boundbox off}
left | Left = if (showBoundBox or showUnitcell) {moveto 1.0 front;moveto 2.0 left;delay 1} else {boundbox on;moveto 1.0 front;moveto 2.0 left;delay 1;boundbox off}
right | Right = if (showBoundBox or showUnitcell) {moveto 1.0 front;moveto 2.0 right;delay 1} else {boundbox on;moveto 1.0 front;moveto 2.0 right;delay 1;boundbox off}
top | Top = if (showBoundBox or showUnitcell) {moveto 1.0 front;moveto 2.0 top;delay 1} else {boundbox on;moveto 1.0 front;moveto 2.0 top;delay 1;boundbox off}
bottom | Bottom = if (showBoundBox or showUnitcell) {moveto 1.0 front;moveto 2.0 bottom;delay 1} else {boundbox on;moveto 1.0 front;moveto 2.0 bottom;delay 1;boundbox off}
back | Back = if (showBoundBox or showUnitcell) {moveto 1.0 front;moveto 2.0 back;delay 1} else {boundbox on;moveto 1.0 front;moveto 2.0 back;delay 1;boundbox off}
renderCpkSpacefill | CPK Spacefill = restrict bonds not selected;select not selected;spacefill 100%;color cpk
renderBallAndStick | Ball and Stick = restrict bonds not selected;select not selected;spacefill 23%AUTO;wireframe 0.15;color cpk
renderSticks | Sticks = restrict bonds not selected;select not selected;wireframe 0.3;color cpk
renderWireframe | Wireframe = restrict bonds not selected;select not selected;wireframe on;color cpk
PDBrenderCartoonsOnly | Cartoon = restrict bonds not selected;select not selected;cartoons on;color structure
PDBrenderTraceOnly | Trace = restrict bonds not selected;select not selected;trace on;color structure
atomNone | Off = cpk off
atom15 | 15% van der Waals = cpk 15%
atom20 | 20% van der Waals = cpk 20%
atom25 | 25% van der Waals = cpk 25%
atom50 | 50% van der Waals = cpk 50%
atom75 | 75% van der Waals = cpk 75%
atom100 | 100% van der Waals = cpk on
bondNone | Off = wireframe off
bondWireframe | On = wireframe on
bond100 | 0.10 Å = wireframe .1
bond150 | 0.15 Å = wireframe .15
bond200 | 0.20 Å = wireframe .2
bond250 | 0.25 Å = wireframe .25
bond300 | 0.30 Å = wireframe .3
hbondCalc | Calculate = hbonds calculate
hbondNone | Off = hbonds off
hbondWireframe | On = hbonds on
PDBhbondSidechain | Set H-Bonds Side Chain = set hbonds sidechain
PDBhbondBackbone | Set H-Bonds Backbone = set hbonds backbone
hbond100 | 0.10 Å = hbonds .1
hbond150 | 0.15 Å = hbonds .15
hbond200 | 0.20 Å = hbonds .2
hbond250 | 0.25 Å = hbonds .25
hbond300 | 0.30 Å = hbonds .3
ssbondNone | Off = ssbonds off
ssbondWireframe | On = ssbonds on
PDBssbondSidechain | Set SS-Bonds Side Chain = set ssbonds sidechain
PDBssbondBackbone | Set SS-Bonds Backbone = set ssbonds backbone
ssbond100 | 0.10 Å = ssbonds .1
ssbond150 | 0.15 Å = ssbonds .15
ssbond200 | 0.20 Å = ssbonds .2
ssbond250 | 0.25 Å = ssbonds .25
ssbond300 | 0.30 Å = ssbonds .3
structureNone | Off = backbone off;cartoons off;ribbons off;rockets off;strands off;trace off;
backbone | Backbone = restrict not selected;select not selected;backbone 0.3
cartoon | Cartoon = restrict not selected;select not selected;set cartoonRockets false;cartoons on
cartoonRockets | Cartoon Rockets = restrict not selected;select not selected;set cartoonRockets;cartoons on
ribbons | Ribbons = restrict not selected;select not selected;ribbons on
rockets | Rockets = restrict not selected;select not selected;rockets on
strands | Strands = restrict not selected;select not selected;strands on
trace | Trace = restrict not selected;select not selected;trace 0.3
vibrationOff | Off = vibration off
vibrationOn | On = vibration on
vibration20 | *2 = vibrationScale *= 2
vibration05 | /2 = vibrationScale /= 2
vectorOff | Off = vectors off
vectorOn | On = vectors on
vector3 | 3 pixels = vectors 3
vector005 | 0.05 Å = vectors 0.05
vector01 | 0.10 Å = vectors 0.1
vectorScale02 | Scale 0.2 = vector scale 0.2
vectorScale05 | Scale 0.5 = vector scale 0.5
vectorScale1 | Scale 1 = vector scale 1
vectorScale2 | Scale 2 = vector scale 2
vectorScale5 | Scale 5 = vector scale 5
stereoNone | None = stereo off
stereoRedCyan | Red+Cyan glasses = stereo redcyan 3
stereoRedBlue | Red+Blue glasses = stereo redblue 3
stereoRedGreen | Red+Green glasses = stereo redgreen 3
stereoCrossEyed | Cross-eyed viewing = stereo -5
stereoWallEyed | Wall-eyed viewing = stereo 5
labelNone | None = label off
labelSymbol | With Element Symbol = label %e
labelName | With Atom Name = label %a
labelNumber | With Atom Number = label %i
labelCentered | Centered = set labeloffset 0 0
labelUpperRight | Upper Right = set labeloffset 4 4
labelLowerRight | Lower Right = set labeloffset 4 -4
labelUpperLeft | Upper Left = set labeloffset -4 4
labelLowerLeft | Lower Left = set labeloffset -4 -4
zoom50 | 50% = zoom 50
zoom100 | 100% = zoom 100
zoom150 | 150% = zoom 150
zoom200 | 200% = zoom 200
zoom400 | 400% = zoom 400
zoom800 | 800% = zoom 800
zoomIn | Zoom In = move 0 0 0 40 0 0 0 0 1
zoomOut | Zoom Out = move 0 0 0 -40 0 0 0 0 1
spinOn | On = spin on
spinOff | Off = spin off
s0 | 0 = 0
s5 | 5 = 5
s10 | 10 = 10
s20 | 20 = 20
s30 | 30 = 30
s40 | 40 = 40
s50 | 50 = 50
onceThrough | Play Once = anim mode once#
palindrome | Palindrome = anim mode palindrome#
loop | Loop = anim mode loop#
play | Play = anim play#
pause | Pause = anim pause#
resume | Resume = anim resume#
stop | Stop = anim off#
nextframe | Next Frame = frame next#
prevframe | Previous Frame = frame prev#
playrev | Reverse = anim playrev#
rewind | Rewind = anim rewind#
restart | Restart = anim on#
animfps5 | 5 = anim fps 5#
animfps10 | 10 = anim fps 10#
animfps20 | 20 = anim fps 20#
animfps30 | 30 = anim fps 30#
animfps50 | 50 = anim fps 50#
measureOff | Double-Click begins and ends all measurements = set pickingstyle MEASURE OFF; set picking OFF
measureDistance | Click for distance measurement = set pickingstyle MEASURE; set picking MEASURE DISTANCE
measureAngle | Click for angle measurement = set pickingstyle MEASURE; set picking MEASURE ANGLE
measureTorsion | Click for torsion (dihedral) measurement = set pickingstyle MEASURE; set picking MEASURE TORSION
PDBmeasureSequence | Click two atoms to display a sequence in the console = set pickingstyle MEASURE; set picking MEASURE SEQUENCE
measureDelete | Delete measurements = measure delete
measureList | List measurements = console on;show measurements
distanceNanometers | Distance units nanometers = select *; set measure nanometers
distanceAngstroms | Distance units Angstroms = select *; set measure angstroms
distancePicometers | Distance units picometers = select *; set measure picometers
pickOff | Off = set picking off
pickCenter | Center = set picking center
pickIdent | Identity = set picking ident
pickLabel | Label = set picking label
pickAtom | Select atom = set picking atom
PDBpickChain | Select chain = set picking chain
pickElement | Select element = set picking element
PDBpickGroup | Select group = set picking group
pickMolecule | Select molecule = set picking molecule
SYMMETRYpickSite | Select site = set picking site
pickSpin | Spin = set picking spin
SYMMETRYpickSymmetry | Show symmetry operation = set picking symmetry
showConsole | Console = console
JSConsole | JavaScript Console = JSCONSOLE
showFile | File Contents = console on;show file
showFileHeader | File Header = console on;getProperty FileHeader
showHistory | History = console on;show history
showIsosurface | Isosurface JVXL data = console on;show isosurface
showMeasure | Measurements = console on;show measure
showMo | Molecular orbital JVXL data = console on;show mo
showModel | Model = console on;show model
showOrient | Orientation = console on;show orientation
showSpacegroup | Space group = console on;show spacegroup
showState | Current state = console on;show state
reload | Reload = load ""
SIGNEDloadPdb | Open from PDB = load ?PdbId?
SIGNEDloadFile | Open local file = load ?
SIGNEDloadUrl | Open URL = load http://?
SIGNEDloadFileUnitCell | Load full unit cell = load ? {1 1 1}
SIGNEDloadScript | Open script = script ?.spt
SIGNEDJAVAcaptureRock | Capture rock = animation mode loop;capture '?Jmol.gif' rock y 10
SIGNEDJAVAcaptureSpin | Capture spin = animation mode loop;capture '?Jmol.gif' spin y
SIGNEDJAVAcaptureBegin | Start capturing = capture '?Jmol.gif'
SIGNEDJAVAcaptureEnd | End capturing = capture ''
SIGNEDJAVAcaptureOff | Disable capturing = capture off
SIGNEDJAVAcaptureOn | Re-enable capturing = capture on
SIGNEDJAVAcaptureFpsSPECIAL | Set capture replay rate = animation fps @{0+prompt('Capture replay frames per second?', animationFPS)};prompt 'animation FPS ' + animationFPS
SIGNEDJAVAcaptureLoopingSPECIAL | Toggle capture looping = animation mode @{(animationMode=='ONCE' ? 'LOOP':'ONCE')};prompt 'animation MODE ' + animationMode
writeFileTextVARIABLE | Save a copy of {0} = if (_applet && !_signedApplet) { console;show file } else { write file "?FILE?"}
writeState | Save script with state = if (_applet && !_signedApplet) { console;show state } else { write state "?FILEROOT?.spt"}
writeHistory | Save script with history = if (_applet && !_signedApplet) { console;show history } else { write history "?FILEROOT?.his"}
SIGNEDwriteJmol | Save all as JMOL file (zip) = write "?FILEROOT?.jmol"
SIGNEDwriteIsosurface | Save JVXL isosurface = write isosurface "?FILEROOT?.jvxl"
SIGNEDJAVAwriteGif | Export GIF image = write image "?FILEROOT?.gif"
SIGNEDNOGLwriteJpg | Export JPG image = write image "?FILEROOT?.jpg"
SIGNEDNOGLwritePng | Export PNG image = write image "?FILEROOT?.png"
SIGNEDNOGLwritePngJmol | Export PNG+JMOL image = write PNGJ "?FILEROOT?.png"
SIGNEDJAVAwritePovray | Export POV-Ray image = write POVRAY "?FILEROOT?.pov"
SIGNEDJAVAwriteVrml | Export VRML 3D model = write VRML "?FILEROOT?.wrl"
SIGNEDJAVAwriteX3d | Export X3D 3D model = write X3D "?FILEROOT?.x3d"
SIGNEDJAVAwriteIdtf | Export IDTF 3D model = write IDTF "?FILEROOT?.idtf"
SIGNEDJAVAwriteMaya | Export Maya 3D model = write MAYA "?FILEROOT?.ma"
SYMMETRYshowSymmetry | Symmetry = console on;show symmetry
UNITCELLshow | Unit cell = console on;show unitcell
extractMOL | Extract MOL data = console on;getproperty extractModel "visible" 
minimize | Optimize structure = minimize
modelkit | Model kit = set modelkitmode
surfDots | Dot Surface = dots on
surfVDW | van der Waals Surface = isosurface delete resolution 0 solvent 0 translucent
surfMolecular | Molecular Surface = isosurface delete resolution 0 molecular translucent
surfSolvent14 | Solvent Surface (1.4-Angstrom probe) = isosurface delete resolution 0 solvent 1.4 translucent
surfSolventAccessible14 | Solvent-Accessible Surface (VDW + 1.4 Angstrom) = isosurface delete resolution 0 sasurface 1.4 translucent
CHARGEsurfMEP | Molecular Electrostatic Potential (range ALL) = isosurface delete resolution 0 vdw color range all map MEP translucent
CHARGEsurf2MEP | Molecular Electrostatic Potential (range -0.1 0.1) = isosurface delete resolution 0 vdw color range -0.1 0.1 map MEP translucent
surfOpaque | Make Opaque = mo opaque;isosurface opaque
surfTranslucent | Make Translucent = mo translucent;isosurface translucent
surfOff | Off = mo delete;isosurface delete;select *;dots off
SYMMETRYhide | Hide Symmetry = draw sym_* delete
FILEMOLload | Reload (molecular) = save orientation;load "";restore orientation;center
FILEUNITone | Reload {1 1 1} = save orientation;load "" {1 1 1} ;restore orientation;center
FILEUNITnine | Reload {444 666 1} = save orientation;load "" {444 666 1} ;restore orientation;center
FILEUNITnineRestricted | Reload {444 666 1} + Display 555 = save orientation;load "" {444 666 1} ;restore orientation; unitcell on; display cell=555;center visible;zoom 200
FILEUNITninePoly | Reload + Polyhedra = save orientation;load "" {444 666 1} ;restore orientation; unitcell on; display cell=555; polyhedra 4,6 (displayed);center (visible);zoom 200
1p | 1 px = on
3p | 3 px = 3
5p | 5 px = 5
10p | 10 px = 10
10a | 0.10 Å = 0.1
20a | 0.20 Å = 0.20
25a | 0.25 Å = 0.25
50a | 0.50 Å = 0.50
100a | 1.0 Å = 1.0


# Part III -- Word Translations
# -----------------------------

modelSetMenu | No atoms loaded
configurationComputedMenu | Configurations
elementsComputedMenu | Element
FRAMESbyModelComputedMenu | Model/Frame
languageComputedMenu | Language
PDBaaResiduesComputedMenu | By Residue Name
PDBnucleicResiduesComputedMenu | By Residue Name
PDBcarboResiduesComputedMenu | By Residue Name
PDBheteroComputedMenu | By HETATM
surfMoComputedMenuText | Molecular Orbitals ({0})
SYMMETRYSelectComputedMenu | Symmetry
SYMMETRYShowComputedMenu | Space Group
hiddenModelSetText | Model information
allModelsText | All {0} models
configurationMenuText | Configurations ({0})
modelSetCollectionText | Collection of {0} models
atomsText | atoms: {0}
bondsText | bonds: {0}
groupsText | groups: {0}
chainsText | chains: {0}
polymersText | polymers: {0}
modelMenuText | model {0}
viewMenuText | View {0}
mainMenuText | Main Menu
biomoleculesMenuText | Biomolecules
biomoleculeText | biomolecule {0} ({1} atoms)
loadBiomoleculeText | load biomolecule {0} ({1} atoms)
sceneComputedMenu | Scenes
hnmrMenu | 1H-NMR
cnmrMenu | 13C-NMR
cpk | Element (CPK)
altloc#PDB | Alternative Location
molecule | Molecule
formalcharge | Formal Charge
partialcharge#CHARGE | Partial Charge
relativeTemperature#BFACTORS | Temperature (Relative)
fixedTemperature#BFACTORS | Temperature (Fixed)
amino#PDB | Amino Acid
structure#PDB | Secondary Structure
chain#PDB | Chain
group#PDB | Group
monomer#PDB | Monomer
shapely#PDB | Shapely
none | Inherit
black | Black
white | White
cyan | Cyan
red | Red
orange | Orange
yellow | Yellow
green | Green
blue | Blue
indigo | Indigo
violet | Violet
salmon | Salmon
olive | Olive
maroon | Maroon
gray | Gray
slateblue | Slate Blue
gold | Gold
orchid | Orchid
opaque | Make Opaque
translucent | Make Translucent
off#axes | Hide
dotted | Dotted
APPLETjmolUrl | http://www.jmol.org
APPLETmouseManualUrl | Mouse Manual
APPLETtranslationUrl | Translations
