# Module `Gnumed.business.gmPerson`

GNUmed patient objects.

This is a patient object intended to let a useful client-side API crystallize from actual use in true XP fashion.

Expand source code

    # -*- coding: utf-8 -*-

    """GNUmed patient objects.

    This is a patient object intended to let a useful client-side
    API crystallize from actual use in true XP fashion.
    """
    #============================================================
    __author__ = "K.Hilbert <Karsten.Hilbert@gmx.net>"
    __license__ = "GPL"

    # std lib
    import sys
    import time
    import datetime as pyDT
    import threading
    import logging
    import inspect
    from xml.etree import ElementTree as etree

    # GNUmed
    if __name__ == '__main__':
            sys.path.insert(0, '../../')
    from Gnumed.pycommon import gmLog2
    if __name__ == '__main__':
            from Gnumed.pycommon import gmI18N
            gmI18N.activate_locale()
    from Gnumed.pycommon import gmDispatcher
    from Gnumed.pycommon import gmBorg
    from Gnumed.pycommon import gmNull
    from Gnumed.pycommon import gmBusinessDBObject
    from Gnumed.pycommon import gmTools
    from Gnumed.pycommon import gmPG2
    from Gnumed.pycommon import gmDateTime
    from Gnumed.pycommon import gmMatchProvider
    from Gnumed.pycommon import gmHooks

    from Gnumed.business import gmDemographicRecord
    from Gnumed.business import gmXdtMappings
    from Gnumed.business import gmProviderInbox
    from Gnumed.business import gmExportArea
    from Gnumed.business import gmBilling
    from Gnumed.business import gmAutoHints
    from Gnumed.business.gmDocuments import cDocumentFolder

    _log = logging.getLogger('gm.person')

    __gender_list = None
    __gender_idx = None

    __gender2salutation_map = None
    __gender2string_map = None

    #============================================================
    _MERGE_SCRIPT_HEADER = """-- GNUmed patient merge script
    -- created: %(date)s
    -- patient to keep : #%(pat2keep)s
    -- patient to merge: #%(pat2del)s
    --
    -- You can EASILY cause mangled data by uncritically applying this script, so ...
    -- ... BE POSITIVELY SURE YOU UNDERSTAND THE FULL EXTENT OF WHAT IT DOES !

    --set default_transaction_read_only to off;

    BEGIN;
    """

    #============================================================
    def external_id_exists(pk_issuer, value) -> int:
            """Check whether an external ID exists for a given ID issuer.

            Args:
                    pk_issuer: primary key of external ID issuer (say, the Department of Motor Vehicles, DMV)
                    value: value of external ID (say, the driver's license ID)

            Returns:
                    Count of stored external IDs for the given issuer.
            """
            cmd = 'SELECT COUNT(1) FROM dem.lnk_identity2ext_id WHERE fk_origin = %(issuer)s AND external_id = %(val)s'
            args = {'issuer': pk_issuer, 'val': value}
            rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
            return rows[0][0]

    #============================================================
    def get_potential_person_dupes(lastnames:str, dob, firstnames:str=None, active_only:bool=True) -> int:
            """Get number of potential duplicates of a person.

            Args:
                    lastnames: last name(s) to search for
                    dob: date of birth to seach for, timestamp truncated to days
                    firstnames: first name(s) to search for if given
                    active_only: search among _all_ patients or among active patients only

            Returns:
                    Count of matches (= potential duplicates for the arguments).
            """
            assert (lastnames is not None), '<lastnames> required'
            assert (dob is not None), '<dob> required'
            args = {
                    'last': lastnames,
                    'dob': dob
            }
            where_parts = [
                    "lastnames = %(last)s",
                    "dem.date_trunc_utc('day', dob) = dem.date_trunc_utc('day', %(dob)s)"
            ]
            if firstnames is not None:
                    if firstnames.strip() != '':
                            where_parts.append("firstnames ~* %(first)s")
                            # the \m makes "firstnames" match at any word boundary
                            args['first'] = '\\m' + firstnames.strip()
            if active_only:
                    cmd = """SELECT COUNT(1) FROM dem.v_active_persons WHERE %s""" % ' AND '.join(where_parts)
            else:
                    cmd = """SELECT COUNT(1) FROM dem.v_all_persons WHERE %s""" % ' AND '.join(where_parts)
            rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
            return rows[0][0]

    #============================================================
    def get_person_duplicates(lastnames:str, firstnames:str, dob, gender:str, comment:str) -> list:
            """Check whether a given person record exists in the database.

            Args:
                    lastnames: last names to search form, case insensitive
                    firstnames: first names to search for, case insensitive
                    dob: date of birth to search for, truncated to days
                    gender: gender, case insensitive
                    comment: comment to search for, used for de-duplication, case insensitive

            Returns:
                    List of primary keys of persons matching the given criteria.
            """
            args = {
                    'last': lastnames.strip(),
                    'first': firstnames.strip(),
                    'dob': dob,
                    'gender': gmTools.none_if (
                            value = gender,
                            none_equivalent = '',
                            strip_string = True
                    ),
                    'cmt': gmTools.none_if (
                            value = comment,
                            none_equivalent = '',
                            strip_string = True
                    )
            }
            cmd = 'SELECT dem.get_person_duplicates(%(dob)s, %(last)s, %(first)s, %(gender)s, %(cmt)s)'
            rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
            return rows[0][0]

    #============================================================
    # FIXME: make this work as a mapping type, too
    class cDTO_person(object):

            def __init__(self):
                    self.identity = None
                    self.external_ids = []
                    self.comm_channels = []
                    self.addresses = []

                    self.firstnames = None
                    self.lastnames = None
                    self.title = None
                    self.gender = None
                    self.dob = None
                    self.dob_is_estimated = False
                    self.source = self.__class__.__name__

                    self.dob_formats = None
                    self.dob_tz = None

            #--------------------------------------------------------
            # external API
            #--------------------------------------------------------
            def keys(self):
                    return 'firstnames lastnames dob gender title'.split()
            #--------------------------------------------------------
            def delete_from_source(self):
                    pass
            #--------------------------------------------------------
            def _is_unique(self):
                    where_snippets = [
                            'firstnames = %(first)s',
                            'lastnames = %(last)s'
                    ]
                    args = {
                            'first': self.firstnames,
                            'last': self.lastnames
                    }
                    if self.dob is not None:
                            where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)")
                            args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59)
                    if self.gender is not None:
                            where_snippets.append('gender = %(sex)s')
                            args['sex'] = self.gender
                    cmd = 'SELECT count(1) FROM dem.v_person_names WHERE %s' % ' AND '.join(where_snippets)
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)

                    return rows[0][0] == 1

            is_unique = property(_is_unique)

            #--------------------------------------------------------
            def _exists(self):
                    where_snippets = [
                            'firstnames = %(first)s',
                            'lastnames = %(last)s'
                    ]
                    args = {
                            'first': self.firstnames,
                            'last': self.lastnames
                    }
                    if self.dob is not None:
                            where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)")
                            args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59)
                    if self.gender is not None:
                            where_snippets.append('gender = %(sex)s')
                            args['sex'] = self.gender
                    cmd = 'SELECT count(1) FROM dem.v_person_names WHERE %s' % ' AND '.join(where_snippets)
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)

                    return rows[0][0] > 0

            exists = property(_exists)

            #--------------------------------------------------------
            def get_candidate_identities(self, can_create=False):
                    """Generate generic queries.

                    - not locale dependant
                    - data -> firstnames, lastnames, dob, gender

                    shall we mogrify name parts ? probably not as external
                    sources should know what they do

                    finds by inactive name, too, but then shows
                    the corresponding active name ;-)

                    Returns list of matching identities (may be empty)
                    or None if it was told to create an identity but couldn't.
                    """
                    where_snippets = []
                    args = {}

                    where_snippets.append('lower(firstnames) = lower(%(first)s)')
                    args['first'] = self.firstnames

                    where_snippets.append('lower(lastnames) = lower(%(last)s)')
                    args['last'] = self.lastnames

                    if self.dob is not None:
                            where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)")
                            args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59)

                    if self.gender is not None:
                            where_snippets.append('lower(gender) = lower(%(sex)s)')
                            args['sex'] = self.gender

                    # FIXME: allow disabled persons ?
                    cmd = """
                            SELECT *, '%s' AS match_type
                            FROM dem.v_active_persons
                            WHERE
                                    pk_identity IN (
                                            SELECT pk_identity FROM dem.v_person_names WHERE %s
                                    )
                            ORDER BY lastnames, firstnames, dob""" % (
                    _('external patient source (name, gender, date of birth)'),
                    ' AND '.join(where_snippets)
                    )

                    try:
                            rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx=True)
                    except Exception:
                            _log.error('cannot get candidate identities for dto "%s"' % self)
                            _log.exception('query %s' % cmd)
                            rows = []

                    if len(rows) == 0:
                            _log.debug('no candidate identity matches found')
                            if not can_create:
                                    return []
                            ident = self.import_into_database()
                            if ident is None:
                                    return None
                            identities = [ident]
                    else:
                            identities = [ cPerson(row = {'pk_field': 'pk_identity', 'data': row, 'idx': idx}) for row in rows ]

                    return identities
            #--------------------------------------------------------
            def import_into_database(self):
                    """Imports self into the database."""

                    self.identity = create_identity (
                            firstnames = self.firstnames,
                            lastnames = self.lastnames,
                            gender = self.gender,
                            dob = self.dob
                    )

                    if self.identity is None:
                            return None

                    self.identity['dob_is_estimated'] = self.dob_is_estimated is True
                    if self.title is not None:
                            self.identity['title'] = self.title
                    self.identity.save()

                    for ext_id in self.external_ids:
                            try:
                                    self.identity.add_external_id (
                                            type_name = ext_id['name'],
                                            value = ext_id['value'],
                                            issuer = ext_id['issuer'],
                                            comment = ext_id['comment']
                                    )
                            except Exception:
                                    _log.exception('cannot import <external ID> from external data source')
                                    gmLog2.log_stack_trace()

                    for comm in self.comm_channels:
                            try:
                                    self.identity.link_comm_channel (
                                            comm_medium = comm['channel'],
                                            url = comm['url']
                                    )
                            except Exception:
                                    _log.exception('cannot import <comm channel> from external data source')
                                    gmLog2.log_stack_trace()

                    for adr in self.addresses:
                            try:
                                    self.identity.link_address (
                                            adr_type = adr['type'],
                                            number = adr['number'],
                                            subunit = adr['subunit'],
                                            street = adr['street'],
                                            postcode = adr['zip'],
                                            urb = adr['urb'],
                                            region_code = adr['region_code'],
                                            country_code = adr['country_code']
                                    )
                            except Exception:
                                    _log.exception('cannot import <address> from external data source')
                                    gmLog2.log_stack_trace()

                    return self.identity
            #--------------------------------------------------------
            def import_extra_data(self, *args, **kwargs):
                    pass
            #--------------------------------------------------------
            def remember_external_id(self, name=None, value=None, issuer=None, comment=None):
                    value = value.strip()
                    if value == '':
                            return
                    name = name.strip()
                    if name == '':
                            raise ValueError(_('<name> cannot be empty'))
                    issuer = issuer.strip()
                    if issuer == '':
                            raise ValueError(_('<issuer> cannot be empty'))
                    self.external_ids.append({'name': name, 'value': value, 'issuer': issuer, 'comment': comment})
            #--------------------------------------------------------
            def remember_comm_channel(self, channel=None, url=None):
                    url = url.strip()
                    if url == '':
                            return
                    channel = channel.strip()
                    if channel == '':
                            raise ValueError(_('<channel> cannot be empty'))
                    self.comm_channels.append({'channel': channel, 'url': url})
            #--------------------------------------------------------
            def remember_address(self, number=None, street=None, urb=None, region_code=None, zip=None, country_code=None, adr_type=None, subunit=None):
                    number = number.strip()
                    if number == '':
                            raise ValueError(_('<number> cannot be empty'))
                    street = street.strip()
                    if street == '':
                            raise ValueError(_('<street> cannot be empty'))
                    urb = urb.strip()
                    if urb == '':
                            raise ValueError(_('<urb> cannot be empty'))
                    zip = zip.strip()
                    if zip == '':
                            raise ValueError(_('<zip> cannot be empty'))
                    country_code = country_code.strip()
                    if country_code == '':
                            raise ValueError(_('<country_code> cannot be empty'))
                    if region_code is not None:
                            region_code = region_code.strip()
                    if region_code in [None, '']:
                            region_code = '??'
                    self.addresses.append ({
                            'type': adr_type,
                            'number': number,
                            'subunit': subunit,
                            'street': street,
                            'zip': zip,
                            'urb': urb,
                            'region_code': region_code,
                            'country_code': country_code
                    })
            #--------------------------------------------------------
            # customizing behaviour
            #--------------------------------------------------------
            def __str__(self):
                    return '<%s (%s) @ %s: %s %s (%s) %s%s>' % (
                            self.__class__.__name__,
                            self.source,
                            id(self),
                            self.lastnames.upper(),
                            self.firstnames,
                            self.gender,
                            gmTools.bool2subst(self.dob_is_estimated, '~', '', ''),
                            self.dob
                    )
            #--------------------------------------------------------
            def __setattr__(self, attr, val):
                    """Do some sanity checks on self.* access."""

                    if attr == 'gender':
                            if val is None:
                                    object.__setattr__(self, attr, val)
                                    return
                            glist, idx = get_gender_list()
                            for gender in glist:
                                    if str(val) in [gender[0], gender[1], gender[2], gender[3]]:
                                            val = gender[idx['tag']]
                                            object.__setattr__(self, attr, val)
                                            return
                            raise ValueError('invalid gender: [%s]' % val)

                    if attr == 'dob':
                            if val is not None:
                                    if isinstance(val, str):
                                            dob = self.__parse_dob_str(val)
                                            if dob is None:
                                                    raise ValueError('cannot parse DOB [%s]' % val)
                                            val = dob
                                    if not isinstance(val, pyDT.datetime):
                                            raise TypeError('invalid type for DOB (must be datetime.datetime): %s [%s]' % (type(val), val))
                                    if val.tzinfo is None:
                                            raise ValueError('datetime.datetime instance is lacking a time zone: [%s]' % val.isoformat())

                    object.__setattr__(self, attr, val)
                    return
            #--------------------------------------------------------
            def __getitem__(self, attr):
                    return getattr(self, attr)
            #--------------------------------------------------------
            def __parse_dob_str(self, dob_str):
                    if self.dob_formats is None:
                            return None
                    for dob_format in self.dob_formats:
                            try:
                                    dob = pyDT.datetime.strptime(dob_str, dob_format)
                            except ValueError:
                                    _log.exception('cannot parse DOB [%s] with [%s]', dob_str, dob_format)
                                    continue
                            if self.dob_tz is None:
                                    raise ValueError('lacking TZ information in DOB [%s] and/or format [%s]' % (dob_str, self.dob_format))
                            dob = dob.replace(tzinfo = self.dob_tz)
                            return dob
                    return None

    #============================================================
    class cPersonName(gmBusinessDBObject.cBusinessDBObject):
            _cmd_fetch_payload = "SELECT * FROM dem.v_person_names WHERE pk_name = %s"
            _cmds_store_payload = [
                    """UPDATE dem.names SET
                            active = FALSE
                    WHERE
                            %(active_name)s IS TRUE                         -- act only when needed and only
                                    AND
                            id_identity = %(pk_identity)s           -- on names of this identity
                                    AND
                            active IS TRUE                                          -- which are active
                                    AND
                            id != %(pk_name)s                                       -- but NOT *this* name
                            """,
                    """update dem.names set
                            active = %(active_name)s,
                            preferred = %(preferred)s,
                            comment = %(comment)s
                    where
                            id = %(pk_name)s and
                            id_identity = %(pk_identity)s and       -- belt and suspenders
                            xmin = %(xmin_name)s""",
                    """select xmin as xmin_name from dem.names where id = %(pk_name)s"""
            ]
            _updatable_fields = ['active_name', 'preferred', 'comment']
            #--------------------------------------------------------
            def __setitem__(self, attribute, value):
                    if attribute == 'active_name':
                            # cannot *directly* deactivate a name, only indirectly
                            # by activating another one
                            # FIXME: should be done at DB level
                            if self._payload[self._idx['active_name']] is True:
                                    return
                    gmBusinessDBObject.cBusinessDBObject.__setitem__(self, attribute, value)
            #--------------------------------------------------------
            def _get_description(self):
                    return '%(last)s, %(title)s %(first)s%(nick)s' % {
                            'last': self._payload[self._idx['lastnames']],
                            'title': gmTools.coalesce (
                                    self._payload[self._idx['title']],
                                    map_gender2salutation(self._payload[self._idx['gender']])
                            ),
                            'first': self._payload[self._idx['firstnames']],
                            'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'", '%s')
                    }

            description = property(_get_description, lambda x:x)

    #============================================================
    _SQL_get_active_person = "SELECT * FROM dem.v_active_persons WHERE pk_identity = %s"
    _SQL_get_any_person = "SELECT * FROM dem.v_all_persons WHERE pk_identity = %s"

    class cPerson(gmBusinessDBObject.cBusinessDBObject):
            _cmd_fetch_payload = _SQL_get_any_person
            _cmds_store_payload = [
                    """UPDATE dem.identity SET
                                    gender = %(gender)s,
                                    dob = %(dob)s,
                                    dob_is_estimated = %(dob_is_estimated)s,
                                    tob = %(tob)s,
                                    title = gm.nullify_empty_string(%(title)s),
                                    fk_marital_status = %(pk_marital_status)s,
                                    deceased = %(deceased)s,
                                    emergency_contact = gm.nullify_empty_string(%(emergency_contact)s),
                                    fk_emergency_contact = %(pk_emergency_contact)s,
                                    fk_primary_provider = %(pk_primary_provider)s,
                                    comment = gm.nullify_empty_string(%(comment)s)
                            WHERE
                                    pk = %(pk_identity)s and
                                    xmin = %(xmin_identity)s
                            RETURNING
                                    xmin AS xmin_identity"""
            ]
            _updatable_fields = [
                    "title",
                    "dob",
                    "tob",
                    "gender",
                    "pk_marital_status",
                    'deceased',
                    'emergency_contact',
                    'pk_emergency_contact',
                    'pk_primary_provider',
                    'comment',
                    'dob_is_estimated'
            ]
            #--------------------------------------------------------
            def _get_ID(self):
                    return self._payload[self._idx['pk_identity']]
            def _set_ID(self, value):
                    raise AttributeError('setting ID of identity is not allowed')

            ID = property(_get_ID, _set_ID)

            #--------------------------------------------------------
            def __setitem__(self, attribute, value):

                    if attribute == 'dob':
                            if value is not None:

                                    if isinstance(value, pyDT.datetime):
                                            if value.tzinfo is None:
                                                    raise ValueError('datetime.datetime instance is lacking a time zone: [%s]' % value.isoformat())
                                    else:
                                            raise TypeError('[%s]: type [%s] (%s) invalid for attribute [dob], must be datetime.datetime or None' % (self.__class__.__name__, type(value), value))

                                    # compare DOB at seconds level
                                    if self._payload[self._idx['dob']] is not None:
                                            old_dob = gmDateTime.pydt_strftime (
                                                    self._payload[self._idx['dob']],
                                                    format = '%Y %m %d %H %M %S',
                                                    accuracy = gmDateTime.acc_seconds
                                            )
                                            new_dob = gmDateTime.pydt_strftime (
                                                    value,
                                                    format = '%Y %m %d %H %M %S',
                                                    accuracy = gmDateTime.acc_seconds
                                            )
                                            if new_dob == old_dob:
                                                    return

                    gmBusinessDBObject.cBusinessDBObject.__setitem__(self, attribute, value)

            #--------------------------------------------------------
            def cleanup(self):
                    pass

            #--------------------------------------------------------
            def _get_is_patient(self):
                    return identity_is_patient(self._payload[self._idx['pk_identity']])

            def _set_is_patient(self, turn_into_patient):
                    if turn_into_patient:
                            return turn_identity_into_patient(self._payload[self._idx['pk_identity']])
                    return False

            is_patient = property(_get_is_patient, _set_is_patient)

            #--------------------------------------------------------
            def _get_as_patient(self):
                    return cPatient(self._payload[self._idx['pk_identity']])

            as_patient = property(_get_as_patient, lambda x:x)

            #--------------------------------------------------------
            def _get_staff_id(self):
                    cmd = "SELECT pk FROM dem.staff WHERE fk_identity = %(pk)s"
                    args = {'pk': self._payload[self._idx['pk_identity']]}
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
                    if len(rows) == 0:
                            return None
                    return rows[0][0]

            staff_id = property(_get_staff_id, lambda x:x)

            #--------------------------------------------------------
            # identity API
            #--------------------------------------------------------
            def _get_gender_symbol(self):
                    return map_gender2symbol[self._payload[self._idx['gender']]]

            gender_symbol = property(_get_gender_symbol, lambda x:x)
            #--------------------------------------------------------
            def _get_gender_string(self):
                    return map_gender2string(gender = self._payload[self._idx['gender']])

            gender_string = property(_get_gender_string, lambda x:x)
            #--------------------------------------------------------
            def _get_gender_list(self):
                    gender_list, tmp = get_gender_list()
                    return gender_list

            gender_list = property(_get_gender_list, lambda x:x)
            #--------------------------------------------------------
            def get_active_name(self):
                    names = self.get_names(active_only = True)
                    if len(names) == 0:
                            _log.error('cannot retrieve active name for patient [%s]', self._payload[self._idx['pk_identity']])
                            return None
                    return names[0]

            active_name = property(get_active_name, lambda x:x)
            #--------------------------------------------------------
            def get_names(self, active_only=False, exclude_active=False):

                    args = {'pk_pat': self._payload[self._idx['pk_identity']]}
                    where_parts = ['pk_identity = %(pk_pat)s']
                    if active_only:
                            where_parts.append('active_name is True')
                    if exclude_active:
                            where_parts.append('active_name is False')
                    cmd = """
                            SELECT *
                            FROM dem.v_person_names
                            WHERE %s
                            ORDER BY active_name DESC, lastnames, firstnames
                    """ % ' AND '.join(where_parts)
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)

                    if len(rows) == 0:
                            # no names registered for patient
                            return []

                    names = [ cPersonName(row = {'idx': idx, 'data': r, 'pk_field': 'pk_name'}) for r in rows ]
                    return names
            #--------------------------------------------------------
            def get_description_gender(self, with_nickname=True):
                    if with_nickname:
                            template = _('%(last)s,%(title)s %(first)s%(nick)s (%(sex)s)')
                    else:
                            template = _('%(last)s,%(title)s %(first)s (%(sex)s)')
                    return template % {
                            'last': self._payload[self._idx['lastnames']],
                            'title': gmTools.coalesce(self._payload[self._idx['title']], '', ' %s'),
                            'first': self._payload[self._idx['firstnames']],
                            'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'"),
                            'sex': self.gender_symbol
                    }

            #--------------------------------------------------------
            def get_description(self, with_nickname=True):
                    if with_nickname:
                            template = _('%(last)s,%(title)s %(first)s%(nick)s')
                    else:
                            template = _('%(last)s,%(title)s %(first)s')
                    return template % {
                            'last': self._payload[self._idx['lastnames']],
                            'title': gmTools.coalesce(self._payload[self._idx['title']], '', ' %s'),
                            'first': self._payload[self._idx['firstnames']],
                            'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'")
                    }

            #--------------------------------------------------------
            def add_name(self, firstnames, lastnames, active=True):
                    """Add a name.

                    @param firstnames The first names.
                    @param lastnames The last names.
                    @param active When True, the new name will become the active one (hence setting other names to inactive)
                    @type active A bool instance
                    """
                    name = create_name(self.ID, firstnames, lastnames, active)
                    if active:
                            self.refetch_payload()
                    return name

            #--------------------------------------------------------
            def delete_name(self, name=None):
                    cmd = "delete from dem.names where id = %(name)s and id_identity = %(pat)s"
                    args = {'name': name['pk_name'], 'pat': self.ID}
                    gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
                    # can't have been the active name as that would raise an
                    # exception (since no active name would be left) so no
                    # data refetch needed

            #--------------------------------------------------------
            def set_nickname(self, nickname=None):
                    """
                    Set the nickname. Setting the nickname only makes sense for the currently
                    active name.
                    @param nickname The preferred/nick/warrior name to set.
                    """
                    if self._payload[self._idx['preferred']] == nickname:
                            return True
                    rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': "SELECT dem.set_nickname(%s, %s)", 'args': [self.ID, nickname]}])
                    # setting nickname doesn't change dem.identity, so other fields
                    # of dem.v_active_persons do not get changed as a consequence of
                    # setting the nickname, hence locally setting nickname matches
                    # in-database reality
                    self._payload[self._idx['preferred']] = nickname
                    #self.refetch_payload()
                    return True

            #--------------------------------------------------------
            def get_tags(self, order_by=None):
                    if order_by is None:
                            order_by = ''
                    else:
                            order_by = 'ORDER BY %s' % order_by

                    cmd = gmDemographicRecord._SQL_get_person_tags % ('pk_identity = %%(pat)s %s' % order_by)
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': {'pat': self.ID}}], get_col_idx = True)

                    return [ gmDemographicRecord.cPersonTag(row = {'data': r, 'idx': idx, 'pk_field': 'pk_identity_tag'}) for r in rows ]

            tags = property(get_tags, lambda x:x)

            #--------------------------------------------------------
            def add_tag(self, tag):
                    args = {
                            'tag': tag,
                            'identity': self.ID
                    }

                    # already exists ?
                    cmd = "SELECT pk FROM dem.identity_tag WHERE fk_tag = %(tag)s AND fk_identity = %(identity)s"
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
                    if len(rows) > 0:
                            return gmDemographicRecord.cPersonTag(aPK_obj = rows[0]['pk'])

                    # no, add
                    cmd = """
                            INSERT INTO dem.identity_tag (
                                    fk_tag,
                                    fk_identity
                            ) VALUES (
                                    %(tag)s,
                                    %(identity)s
                            )
                            RETURNING pk
                    """
                    rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], return_data = True, get_col_idx = False)
                    return gmDemographicRecord.cPersonTag(aPK_obj = rows[0]['pk'])

            #--------------------------------------------------------
            def remove_tag(self, tag):
                    cmd = "DELETE FROM dem.identity_tag WHERE pk = %(pk)s"
                    gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': {'pk': tag}}])

            #--------------------------------------------------------
            # external ID API
            #
            # since external IDs are not treated as first class
            # citizens (classes in their own right, that is), we
            # handle them *entirely* within cPerson, also they
            # only make sense with one single person (like names)
            # and are not reused (like addresses), so they are
            # truly added/deleted, not just linked/unlinked
            #--------------------------------------------------------
            def add_external_id(self, type_name=None, value=None, issuer=None, comment=None, pk_type=None):
                    """Adds an external ID to the patient.

                    creates ID type if necessary
                    """
                    # check for existing ID
                    if pk_type is not None:
                            cmd = """
                                    select * from dem.v_external_ids4identity where
                                    pk_identity = %(pat)s and
                                    pk_type = %(pk_type)s and
                                    value = %(val)s"""
                    else:
                            # by type/value/issuer
                            if issuer is None:
                                    cmd = """
                                            select * from dem.v_external_ids4identity where
                                            pk_identity = %(pat)s and
                                            name = %(name)s and
                                            value = %(val)s"""
                            else:
                                    cmd = """
                                            select * from dem.v_external_ids4identity where
                                                    pk_identity = %(pat)s and
                                                    name = %(name)s and
                                                    value = %(val)s and
                                                    issuer = %(issuer)s"""
                    args = {
                            'pat': self.ID,
                            'name': type_name,
                            'val': value,
                            'issuer': issuer,
                            'pk_type': pk_type
                    }
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])

                    # create new ID if not found
                    if len(rows) == 0:

                            args = {
                                    'pat': self.ID,
                                    'val': value,
                                    'type_name': type_name,
                                    'pk_type': pk_type,
                                    'issuer': issuer,
                                    'comment': comment
                            }

                            if pk_type is None:
                                    cmd = """insert into dem.lnk_identity2ext_id (external_id, fk_origin, comment, id_identity) values (
                                            %(val)s,
                                            (select dem.add_external_id_type(%(type_name)s, %(issuer)s)),
                                            %(comment)s,
                                            %(pat)s
                                    )"""
                            else:
                                    cmd = """insert into dem.lnk_identity2ext_id (external_id, fk_origin, comment, id_identity) values (
                                            %(val)s,
                                            %(pk_type)s,
                                            %(comment)s,
                                            %(pat)s
                                    )"""

                            rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])

                    # or update comment of existing ID
                    else:
                            row = rows[0]
                            if comment is not None:
                                    # comment not already there ?
                                    if gmTools.coalesce(row['comment'], '').find(comment.strip()) == -1:
                                            comment = '%s%s' % (gmTools.coalesce(row['comment'], '', '%s // '), comment.strip)
                                            cmd = "update dem.lnk_identity2ext_id set comment = %(comment)s where id=%(pk)s"
                                            args = {'comment': comment, 'pk': row['pk_id']}
                                            rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])

            #--------------------------------------------------------
            def update_external_id(self, pk_id=None, type=None, value=None, issuer=None, comment=None):
                    """Edits an existing external ID.

                    Creates ID type if necessary.
                    """
                    cmd = """
                            UPDATE dem.lnk_identity2ext_id SET
                                    fk_origin = (SELECT dem.add_external_id_type(%(type)s, %(issuer)s)),
                                    external_id = %(value)s,
                                    comment = gm.nullify_empty_string(%(comment)s)
                            WHERE
                                    id = %(pk)s
                    """
                    args = {'pk': pk_id, 'value': value, 'type': type, 'issuer': issuer, 'comment': comment}
                    rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])

            #--------------------------------------------------------
            def get_external_ids(self, id_type=None, issuer=None):
                    where_parts = ['pk_identity = %(pat)s']
                    args = {'pat': self.ID}

                    if id_type is not None:
                            where_parts.append('name = %(name)s')
                            args['name'] = id_type.strip()

                    if issuer is not None:
                            where_parts.append('issuer = %(issuer)s')
                            args['issuer'] = issuer.strip()

                    cmd = "SELECT * FROM dem.v_external_ids4identity WHERE %s" % ' AND '.join(where_parts)
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])

                    return rows

            external_ids = property(get_external_ids, lambda x:x)

            #--------------------------------------------------------
            def delete_external_id(self, pk_ext_id=None):
                    cmd = """
                            DELETE FROM dem.lnk_identity2ext_id
                            WHERE id_identity = %(pat)s AND id = %(pk)s"""
                    args = {'pat': self.ID, 'pk': pk_ext_id}
                    gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])

            #--------------------------------------------------------
            def suggest_external_id(self, target=None):
                    dob = self.get_formatted_dob(format = '%Y%m%d', none_string = '?dob?')
                    gender = gmTools.coalesce(self['gender'], '?gender?')
                    pk = '#GMd::PK::%s#' % self.ID
                    name = self.active_name
                    last = ' '.join(p for p in name['lastnames'].split("-"))
                    last = ' '.join(p for p in last.split("."))
                    last = ' '.join(p for p in last.split("'"))
                    last = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in last.split(' '))
                    first = ' '.join(p for p in name['firstnames'].split("-"))
                    first = ' '.join(p for p in first.split("."))
                    first = ' '.join(p for p in first.split("'"))
                    first = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in first.split(' '))
                    suggestion_parts = ['GMd']
                    if target is not None:
                            suggestion_parts.append(target)
                    suggestion_parts.append(last)
                    suggestion_parts.append(first)
                    suggestion_parts.append(dob)
                    suggestion_parts.append(gender)
                    suggestion_parts.append(pk)
                    suggestion = '-'.join (suggestion_parts)
                    try:
                            import unidecode
                            suggestion = unidecode.unidecode(suggestion)
                    except ImportError:
                            _log.debug('cannot transliterate external ID suggestion, <unidecode> module not installed')
                    return suggestion

            external_id_suggestion = property(suggest_external_id, lambda x:x)

            #--------------------------------------------------------
            def suggest_external_ids(self, target=None):
                    """Suggest external IDs for this person."""
                    dob = self.get_formatted_dob(format = '%Y%m%d', none_string = '?dob?')
                    gender = gmTools.coalesce(self['gender'], '?gender?')
                    pk = '#GMd::PK::%s#' % self.ID
                    suggestions = []
                    for name in self.get_names(active_only = False, exclude_active = False):
                            last = ' '.join(part for part in name['lastnames'].split("-"))
                            last = ' '.join(part for part in last.split("."))
                            last = ' '.join(part for part in last.split("'"))
                            last = ''.join(gmTools.capitalize(text = part, mode = gmTools.CAPS_FIRST_ONLY) for part in last.split(' '))
                            first = ' '.join(part for part in name['firstnames'].split("-"))
                            first = ' '.join(part for part in first.split("."))
                            first = ' '.join(part for part in first.split("'"))
                            first = ''.join(gmTools.capitalize(text = part, mode = gmTools.CAPS_FIRST_ONLY) for part in first.split(' '))
                            suggestion_parts = ['GMd']
                            if target is not None:
                                    suggestion_parts.append(target)
                            suggestion_parts.append(last)
                            suggestion_parts.append(first)
                            suggestion_parts.append(dob)
                            suggestion_parts.append(gender)
                            suggestion_parts.append(pk)
                            suggestion = '-'.join(suggestion_parts)
                            try:
                                    import unidecode
                                    suggestion = unidecode.unidecode(suggestion)
                            except ImportError:
                                    _log.debug('cannot transliterate to ASCII external ID suggestion, <unidecode> module not installed')
                            suggestions.append(suggestion)
                    return suggestions

            #--------------------------------------------------------
            #--------------------------------------------------------
            def assimilate_identity(self, other_identity=None, link_obj=None):
                    """Merge another identity into this one.

                    Keep this one. Delete other one."""

                    if other_identity.ID == self.ID:
                            return True, None

                    curr_pat = gmCurrentPatient()
                    if curr_pat.connected:
                            if other_identity.ID == curr_pat.ID:
                                    return False, _('Cannot merge active patient into another patient.')

                    now_here = gmDateTime.pydt_strftime(gmDateTime.pydt_now_here())
                    distinguisher = _('merge of #%s into #%s @ %s') % (other_identity.ID, self.ID, now_here)

                    queries = []
                    args = {'pat2del': other_identity.ID, 'pat2keep': self.ID}

                    # merge allergy state
                    queries.append ({
                            'cmd': """
                                    UPDATE clin.allergy_state SET
                                            has_allergy = greatest (
                                                    (SELECT has_allergy FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s),
                                                    (SELECT has_allergy FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s)
                                            ),
                                            -- perhaps use least() to play it safe and make it appear longer ago than it might have been, actually ?
                                            last_confirmed = greatest (
                                                    (SELECT last_confirmed FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s),
                                                    (SELECT last_confirmed FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s)
                                            )
                                    WHERE
                                            pk = (SELECT pk_allergy_state FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s)
                            """,
                            'args': args
                    })
                    # delete old allergy state
                    queries.append ({
                            'cmd': 'DELETE FROM clin.allergy_state WHERE pk = (SELECT pk_allergy_state FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s)',
                            'args': args
                    })

                    # merge patient proxy
                    queries.append ({
                            'cmd': """
                                    UPDATE clin.patient SET
                                            edc = coalesce (
                                                    edc,
                                                    (SELECT edc FROM clin.patient WHERE fk_identity = %(pat2del)s)
                                            )
                                    WHERE
                                            fk_identity = %(pat2keep)s
                            """,
                            'args': args
                    })

                    # transfer names
                    # 1) hard-disambiguate all inactive names in old patient
                    #    (the active one will be disambiguated upon being moved)
                    queries.append ({
                            'cmd': """
                                    UPDATE dem.names d_n1 SET
                                            comment = coalesce (
                                                    comment, ''
                                            ) || coalesce (
                                                    ' (from identity: "' || (SELECT comment FROM dem.identity WHERE pk = %%(pat2del)s) || '")',
                                                    ''
                                            ) || ' (during: "%s")'
                                    WHERE
                                            d_n1.id_identity = %%(pat2del)s
                                    """ % distinguisher,
                            'args': args
                    })
                    # 2) move inactive ones (dupes are expected to have been eliminated in step 1 above)
                    queries.append ({
                            'cmd': u"""
                                    UPDATE dem.names d_n SET
                                            id_identity = %(pat2keep)s,
                                            lastnames = lastnames || ' [' || random()::TEXT || ']'
                                    WHERE
                                            d_n.id_identity = %(pat2del)s
                                                    AND
                                            d_n.active IS false
                                    """,
                            'args': args
                    })
                    # 3) copy active name into pat2keep as an inactive name,
                    #    because each identity MUST have at LEAST one name,
                    #    we can't simply UPDATE over to pat2keep
                    #    also, needs de-duplication or else it would conflict with
                    #    *itself* on pat2keep
                    queries.append ({
                            'cmd': """
                                    INSERT INTO dem.names (
                                            id_identity, active, firstnames, preferred, comment,
                                            lastnames
                                    )
                                            SELECT
                                                    %(pat2keep)s, false, firstnames, preferred, comment,
                                                    lastnames || ' [' || random()::text || ']'
                                            FROM dem.names d_n
                                            WHERE
                                                    d_n.id_identity = %(pat2del)s
                                                            AND
                                                    d_n.active IS true
                                    """,
                            'args': args
                    })

                    # disambiguate potential dupes
                    # - same-url comm channels
                    queries.append ({
                            'cmd': """
                                    UPDATE dem.lnk_identity2comm
                                    SET url = url || ' (%s)'
                                    WHERE
                                            fk_identity = %%(pat2del)s
                                                    AND
                                            EXISTS (
                                                    SELECT 1 FROM dem.lnk_identity2comm d_li2c
                                                    WHERE d_li2c.fk_identity = %%(pat2keep)s AND d_li2c.url = url
                                            )
                                    """ % distinguisher,
                            'args': args
                    })
                    # - same-value external IDs
                    queries.append ({
                            'cmd': """
                                    UPDATE dem.lnk_identity2ext_id
                                    SET external_id = external_id || ' (%s)'
                                    WHERE
                                            id_identity = %%(pat2del)s
                                                    AND
                                            EXISTS (
                                                    SELECT 1 FROM dem.lnk_identity2ext_id d_li2e
                                                    WHERE
                                                            d_li2e.id_identity = %%(pat2keep)s
                                                                    AND
                                                            d_li2e.external_id = external_id
                                                                    AND
                                                            d_li2e.fk_origin = fk_origin
                                            )
                                    """ % distinguisher,
                            'args': args
                    })
                    # - same addresses
                    queries.append ({
                            'cmd': """
                                    DELETE FROM dem.lnk_person_org_address
                                    WHERE
                                            id_identity = %(pat2del)s
                                                    AND
                                            id_address IN (
                                                    SELECT id_address FROM dem.lnk_person_org_address d_lpoa
                                                    WHERE d_lpoa.id_identity = %(pat2keep)s
                                            )
                            """,
                            'args': args
                    })

                    # find FKs pointing to dem.identity.pk
                    FKs = gmPG2.get_foreign_keys2column (
                            schema = 'dem',
                            table = 'identity',
                            column = 'pk'
                    )
                    # find FKs pointing to clin.patient.fk_identity
                    FKs.extend (gmPG2.get_foreign_keys2column (
                            schema = 'clin',
                            table = 'patient',
                            column = 'fk_identity'
                    ))

                    # generate UPDATEs
                    cmd_template = 'UPDATE %s SET %s = %%(pat2keep)s WHERE %s = %%(pat2del)s'
                    for FK in FKs:
                            if FK['referencing_table'] in ['dem.names', 'clin.patient']:
                                    continue
                            queries.append ({
                                    'cmd': cmd_template % (FK['referencing_table'], FK['referencing_column'], FK['referencing_column']),
                                    'args': args
                            })

                    # delete old patient proxy
                    queries.append ({
                            'cmd': 'DELETE FROM clin.patient WHERE fk_identity = %(pat2del)s',
                            'args': args
                    })

                    # remove old identity entry
                    queries.append ({
                            'cmd': 'delete from dem.identity where pk = %(pat2del)s',
                            'args': args
                    })

                    script_name = gmTools.get_unique_filename(prefix = 'gm-assimilate-%(pat2del)s-into-%(pat2keep)s-' % args, suffix = '.sql')
                    _log.warning('identity [%s] is about to assimilate identity [%s], SQL script [%s]', self.ID, other_identity.ID, script_name)

                    script = open(script_name, 'wt')
                    args['date'] = gmDateTime.pydt_strftime(gmDateTime.pydt_now_here(), '%Y %B %d  %H:%M')
                    script.write(_MERGE_SCRIPT_HEADER % args)
                    for query in queries:
                            script.write(query['cmd'] % args)
                            script.write(';\n')
                    script.write('\nROLLBACK;\n')
                    script.write('--COMMIT;\n')
                    script.close()

                    try:
                            gmPG2.run_rw_queries(link_obj = link_obj, queries = queries, end_tx = True)
                    except Exception:
                            return False, _('The merge failed. Check the log and [%s]') % script_name

                    self.add_external_id (
                            type_name = 'merged GNUmed identity primary key',
                            value = 'GNUmed::pk::%s' % other_identity.ID,
                            issuer = 'GNUmed'
                    )

                    return True, None

            #--------------------------------------------------------
            #--------------------------------------------------------
            def put_on_waiting_list(self, urgency=0, comment=None, zone=None):
                    cmd = """
                            insert into clin.waiting_list (fk_patient, urgency, comment, area, list_position)
                            values (
                                    %(pat)s,
                                    %(urg)s,
                                    %(cmt)s,
                                    %(area)s,
                                    (select coalesce((max(list_position) + 1), 1) from clin.waiting_list)
                            )"""
                    args = {'pat': self.ID, 'urg': urgency, 'cmt': comment, 'area': zone}
                    gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], verbose = True)
                    gmHooks.run_hook_script(hook = 'after_waiting_list_modified')

            #--------------------------------------------------------
            def get_waiting_list_entry(self):
                    cmd = """SELECT * FROM clin.v_waiting_list WHERE pk_identity = %(pat)s"""
                    args = {'pat': self.ID}
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
                    return rows

            waiting_list_entries = property(get_waiting_list_entry, lambda x:x)

            #--------------------------------------------------------
            def _get_export_area(self):
                    return gmExportArea.cExportArea(self.ID)

            export_area = property(_get_export_area, lambda x:x)
            #--------------------------------------------------------
            def export_as_gdt(self, filename=None, encoding='iso-8859-15', external_id_type=None):

                    template = '%s%s%s\r\n'

                    if filename is None:
                            filename = gmTools.get_unique_filename (
                                    prefix = 'gm-patient-',
                                    suffix = '.gdt'
                            )

                    gdt_file = open(filename, mode = 'wt', encoding = encoding, errors = 'strict')

                    gdt_file.write(template % ('013', '8000', '6301'))
                    gdt_file.write(template % ('013', '9218', '2.10'))
                    if external_id_type is None:
                            gdt_file.write(template % ('%03d' % (9 + len(str(self.ID))), '3000', self.ID))
                    else:
                            ext_ids = self.get_external_ids(id_type = external_id_type)
                            if len(ext_ids) > 0:
                                    gdt_file.write(template % ('%03d' % (9 + len(ext_ids[0]['value'])), '3000', ext_ids[0]['value']))
                    gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['lastnames']])), '3101', self._payload[self._idx['lastnames']]))
                    gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['firstnames']])), '3102', self._payload[self._idx['firstnames']]))
                    gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['dob']].strftime('%d%m%Y'))), '3103', self._payload[self._idx['dob']].strftime('%d%m%Y')))
                    gdt_file.write(template % ('010', '3110', gmXdtMappings.map_gender_gm2xdt[self._payload[self._idx['gender']]]))
                    gdt_file.write(template % ('025', '6330', 'GNUmed::9206::encoding'))
                    gdt_file.write(template % ('%03d' % (9 + len(encoding)), '6331', encoding))
                    if external_id_type is None:
                            gdt_file.write(template % ('029', '6332', 'GNUmed::3000::source'))
                            gdt_file.write(template % ('017', '6333', 'internal'))
                    else:
                            if len(ext_ids) > 0:
                                    gdt_file.write(template % ('029', '6332', 'GNUmed::3000::source'))
                                    gdt_file.write(template % ('%03d' % (9 + len(external_id_type)), '6333', external_id_type))

                    gdt_file.close()

                    return filename
            #--------------------------------------------------------
            def export_as_xml_linuxmednews(self, filename=None):

                    if filename is None:
                            filename = gmTools.get_unique_filename (
                                    prefix = 'gm-LinuxMedNews_demographics-',
                                    suffix = '.xml'
                            )

                    dob_format = '%Y-%m-%d'
                    pat = etree.Element('patient')

                    first = etree.SubElement(pat, 'firstname')
                    first.text = gmTools.coalesce(self._payload[self._idx['firstnames']], '')

                    last = etree.SubElement(pat, 'lastname')
                    last.text = gmTools.coalesce(self._payload[self._idx['lastnames']], '')

                    # privacy
                    #middle = etree.SubElement(pat, u'middlename')
                    #middle.set(u'comment', _('preferred name/call name/...'))
                    #middle.text = gmTools.coalesce(self._payload[self._idx['preferred']], u'')

                    pref = etree.SubElement(pat, 'name_prefix')
                    pref.text = gmTools.coalesce(self._payload[self._idx['title']], '')

                    suff = etree.SubElement(pat, 'name_suffix')
                    suff.text = ''

                    dob = etree.SubElement(pat, 'DOB')
                    dob.set('format', dob_format)
                    dob.text = gmDateTime.pydt_strftime(self._payload[self._idx['dob']], dob_format, accuracy = gmDateTime.acc_days, none_str = '')

                    gender = etree.SubElement(pat, 'gender')
                    gender.set('comment', self.gender_string)
                    if self._payload[self._idx['gender']] is None:
                            gender.text = ''
                    else:
                            gender.text = map_gender2mf[self._payload[self._idx['gender']]]

                    home = etree.SubElement(pat, 'home_address')
                    adrs = self.get_addresses(address_type = 'home')
                    if len(adrs) > 0:
                            adr = adrs[0]
                            city = etree.SubElement(home, 'city')
                            city.set('comment', gmTools.coalesce(adr['suburb'], ''))
                            city.text = gmTools.coalesce(adr['urb'], '')

                            region = etree.SubElement(home, 'region')
                            region.set('comment', gmTools.coalesce(adr['l10n_region'], ''))
                            region.text = gmTools.coalesce(adr['code_region'], '')

                            zipcode = etree.SubElement(home, 'postal_code')
                            zipcode.text = gmTools.coalesce(adr['postcode'], '')

                            street = etree.SubElement(home, 'street')
                            street.set('comment', gmTools.coalesce(adr['notes_street'], ''))
                            street.text = gmTools.coalesce(adr['street'], '')

                            no = etree.SubElement(home, 'number')
                            no.set('subunit', gmTools.coalesce(adr['subunit'], ''))
                            no.set('comment', gmTools.coalesce(adr['notes_subunit'], ''))
                            no.text = gmTools.coalesce(adr['number'], '')

                            country = etree.SubElement(home, 'country')
                            country.set('comment', adr['l10n_country'])
                            country.text = gmTools.coalesce(adr['code_country'], '')

                    phone = etree.SubElement(pat, 'home_phone')
                    rec = self.get_comm_channels(comm_medium = 'homephone')
                    if len(rec) > 0:
                            if not rec[0]['is_confidential']:
                                    phone.set('comment', gmTools.coalesce(rec[0]['comment'], ''))
                                    phone.text = rec[0]['url']

                    phone = etree.SubElement(pat, 'work_phone')
                    rec = self.get_comm_channels(comm_medium = 'workphone')
                    if len(rec) > 0:
                            if not rec[0]['is_confidential']:
                                    phone.set('comment', gmTools.coalesce(rec[0]['comment'], ''))
                                    phone.text = rec[0]['url']

                    phone = etree.SubElement(pat, 'cell_phone')
                    rec = self.get_comm_channels(comm_medium = 'mobile')
                    if len(rec) > 0:
                            if not rec[0]['is_confidential']:
                                    phone.set('comment', gmTools.coalesce(rec[0]['comment'], ''))
                                    phone.text = rec[0]['url']

                    tree = etree.ElementTree(pat)
                    tree.write(filename, encoding = 'UTF-8')

                    return filename

            #--------------------------------------------------------
            def export_as_vcard(self, filename=None):
                    # http://vobject.skyhouseconsulting.com/usage.html
                    # http://en.wikipedia.org/wiki/VCard
                    # http://svn.osafoundation.org/vobject/trunk/vobject/vcard.py
                    # http://www.ietf.org/rfc/rfc2426.txt

                    dob_format = '%Y%m%d'

                    import vobject

                    vc = vobject.vCard()
                    vc.add('kind')
                    vc.kind.value = 'individual'

                    vc.add('fn')
                    vc.fn.value = self.get_description(with_nickname = False)       # privacy
                    vc.add('n')
                    vc.n.value = vobject.vcard.Name(family = self._payload[self._idx['lastnames']], given = self._payload[self._idx['firstnames']])
                    # privacy
                    #vc.add(u'nickname')
                    #vc.nickname.value = gmTools.coalesce(self._payload[self._idx['preferred']], u'')
                    vc.add('title')
                    vc.title.value = gmTools.coalesce(self._payload[self._idx['title']], '')
                    vc.add('gender')
                    # FIXME: dont know how to add gender_string after ';'
                    vc.gender.value = map_gender2vcard[self._payload[self._idx['gender']]]#, self.gender_string
                    vc.add('bday')
                    vc.bday.value = gmDateTime.pydt_strftime(self._payload[self._idx['dob']], dob_format, accuracy = gmDateTime.acc_days, none_str = '')

                    channels = self.get_comm_channels(comm_medium = 'homephone')
                    if len(channels) > 0:
                            if not channels[0]['is_confidential']:
                                    vc.add('tel')
                                    vc.tel.value = channels[0]['url']
                                    vc.tel.type_param = 'HOME'
                    channels = self.get_comm_channels(comm_medium = 'workphone')
                    if len(channels) > 0:
                            if not channels[0]['is_confidential']:
                                    vc.add('tel')
                                    vc.tel.value = channels[0]['url']
                                    vc.tel.type_param = 'WORK'
                    channels = self.get_comm_channels(comm_medium = 'mobile')
                    if len(channels) > 0:
                            if not channels[0]['is_confidential']:
                                    vc.add('tel')
                                    vc.tel.value = channels[0]['url']
                                    vc.tel.type_param = 'CELL'
                    channels = self.get_comm_channels(comm_medium = 'fax')
                    if len(channels) > 0:
                            if not channels[0]['is_confidential']:
                                    vc.add('tel')
                                    vc.tel.value = channels[0]['url']
                                    vc.tel.type_param = 'FAX'
                    channels = self.get_comm_channels(comm_medium = 'email')
                    if len(channels) > 0:
                            if not channels[0]['is_confidential']:
                                    vc.add('email')
                                    vc.tel.value = channels[0]['url']
                                    vc.tel.type_param = 'INTERNET'
                    channels = self.get_comm_channels(comm_medium = 'web')
                    if len(channels) > 0:
                            if not channels[0]['is_confidential']:
                                    vc.add('url')
                                    vc.tel.value = channels[0]['url']
                                    vc.tel.type_param = 'INTERNET'

                    adrs = self.get_addresses(address_type = 'home')
                    if len(adrs) > 0:
                            home_adr = adrs[0]
                            vc.add('adr')
                            vc.adr.type_param = 'HOME'
                            vc.adr.value = vobject.vcard.Address()
                            vc_adr = vc.adr.value
                            vc_adr.extended = gmTools.coalesce(home_adr['subunit'], '')
                            vc_adr.street = gmTools.coalesce(home_adr['street'], '', '%s ') + gmTools.coalesce(home_adr['number'], '')
                            vc_adr.region = gmTools.coalesce(home_adr['l10n_region'], '')
                            vc_adr.code = gmTools.coalesce(home_adr['postcode'], '')
                            vc_adr.city = gmTools.coalesce(home_adr['urb'], '')
                            vc_adr.country = gmTools.coalesce(home_adr['l10n_country'], '')

                    #photo (base64)

                    if filename is None:
                            filename = gmTools.get_unique_filename (
                                    prefix = 'gm-patient-',
                                    suffix = '.vcf'
                            )
                    vcf = open(filename, mode = 'wt', encoding = 'utf8')
                    try:
                            vcf.write(vc.serialize())
                    except UnicodeDecodeError:
                            _log.exception('failed to serialize VCF data')
                            vcf.close()
                            return 'cannot-serialize.vcf'
                    vcf.close()

                    return filename

            #--------------------------------------------------------
            def export_as_mecard(self, filename=None):
                    if filename is None:
                            filename = gmTools.get_unique_filename (
                                    prefix = 'gm-patient-',
                                    suffix = '.mcf'
                            )
                    with open(filename, mode = 'wt', encoding = 'utf8') as mecard_file:
                            mecard_file.write(self.MECARD)
                    return filename

            #--------------------------------------------------------
            def _get_mecard(self):
                    """
                    http://blog.thenetimpact.com/2011/07/decoding-qr-codes-how-to-format-data-for-qr-code-generators/
                    https://www.nttdocomo.co.jp/english/service/developer/make/content/barcode/function/application/addressbook/index.html

                    MECARD:N:NAME;ADR:pobox,subunit,unit,street,ort,region,zip,country;TEL:111111111;FAX:22222222;EMAIL:mail@praxis.org;

                    MECARD:N:lastname,firstname;BDAY:YYYYMMDD;ADR:pobox,subunit,number,street,location,region,zip,country;EMAIL:...;TEL:...;FAX:...;URL:...;;
                    MECARD:N:$<lastname::::>$,$<firstname::::>$;BDAY:$<date_of_birth::%Y%m%d::>$;ADR:,$<adr_subunit::home::>$,$<adr_number::home::>$,$<adr_street::home::>$,$<adr_location::home::>$,,$<adr_postcode::home::>$,$<adr_country::home::>$;;
                    """
                    mecard_fields = [
                            'MECARD:N:%s,%s' % (
                                    self._payload[self._idx['lastnames']].strip(),
                                    self._payload[self._idx['firstnames']].strip()
                            )
                    ]
                    if self._payload[self._idx['dob']] is not None:
                            mecard_fields.append('BDAY:%s' % self._payload[self._idx['dob']].strftime('%Y%m%d'))
                    adrs = self.get_addresses(address_type = 'home')
                    if len(adrs) > 0:
                            mecard_fields.append('ADR:,%(subunit)s,%(number)s,%(street)s,%(urb)s,,%(postcode)s,%(l10n_country)s' % adrs[0])
                    comms = self.get_comm_channels(comm_medium = 'homephone')
                    if len(comms) > 0:
                            if not comms[0]['is_confidential']:
                                    mecard_fields.append('TEL:%s' % comms[0]['url'].strip())
                    comms = self.get_comm_channels(comm_medium = 'fax')
                    if len(comms) > 0:
                            if not comms[0]['is_confidential']:
                                    mecard_fields.append('FAX:%s' % comms[0]['url'].strip())
                    comms = self.get_comm_channels(comm_medium = 'email')
                    if len(comms) > 0:
                            if not comms[0]['is_confidential']:
                                    mecard_fields.append('EMAIL:%s' % comms[0]['url'].strip())
                    if len(adrs) > 0:
                            mecard_fields.append('URL:%s' % adrs[0].as_map_url)
                    MECARD = ';'.join(mecard_fields) + ';'
                    return MECARD

            MECARD = property(_get_mecard)

            #--------------------------------------------------------
            # occupations API
            #--------------------------------------------------------
            def get_occupations(self):
                    return gmDemographicRecord.get_occupations(pk_identity = self.pk_obj)

            #--------------------------------------------------------
            def link_occupation(self, occupation=None, activities=None):
                    """Link an occupation with a patient, creating the occupation if it does not exists.

                            @param occupation The name of the occupation to link the patient to.
                    """
                    if (activities is None) and (occupation is None):
                            return True

                    occupation = occupation.strip()
                    if len(occupation) == 0:
                            return True

                    if activities is not None:
                            activities = activities.strip()

                    args = {'act': activities, 'pat_id': self.pk_obj, 'job': occupation}

                    cmd = "select activities from dem.v_person_jobs where pk_identity = %(pat_id)s and l10n_occupation = _(%(job)s)"
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])

                    queries = []
                    if len(rows) == 0:
                            queries.append ({
                                    'cmd': "INSERT INTO dem.lnk_job2person (fk_identity, fk_occupation, activities) VALUES (%(pat_id)s, dem.create_occupation(%(job)s), %(act)s)",
                                    'args': args
                            })
                    else:
                            if rows[0]['activities'] != activities:
                                    queries.append ({
                                            'cmd': "update dem.lnk_job2person set activities=%(act)s where fk_identity=%(pat_id)s and fk_occupation=(select id from dem.occupation where _(name) = _(%(job)s))",
                                            'args': args
                                    })

                    rows, idx = gmPG2.run_rw_queries(queries = queries)

                    return True
            #--------------------------------------------------------
            def unlink_occupation(self, occupation=None):
                    if occupation is None:
                            return True
                    occupation = occupation.strip()
                    cmd = "delete from dem.lnk_job2person where fk_identity=%(pk)s and fk_occupation in (select id from dem.occupation where _(name) = _(%(job)s))"
                    rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': {'pk': self.pk_obj, 'job': occupation}}])
                    return True
            #--------------------------------------------------------
            # comms API
            #--------------------------------------------------------
            def get_comm_channels(self, comm_medium=None):
                    cmd = "select * from dem.v_person_comms where pk_identity = %s"
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': [self.pk_obj]}], get_col_idx = True)

                    filtered = rows

                    if comm_medium is not None:
                            filtered = []
                            for row in rows:
                                    if row['comm_type'] == comm_medium:
                                            filtered.append(row)

                    return [ gmDemographicRecord.cCommChannel(row = {
                                            'pk_field': 'pk_lnk_identity2comm',
                                            'data': r,
                                            'idx': idx
                                    }) for r in filtered
                            ]

            comm_channels = property(get_comm_channels, lambda x:x)
            #--------------------------------------------------------
            def link_comm_channel(self, comm_medium=None, url=None, is_confidential=False, pk_channel_type=None):
                    """Link a communication medium with a patient.

                    @param comm_medium The name of the communication medium.
                    @param url The communication resource locator.
                    @type url A str instance.
                    @param is_confidential Wether the data must be treated as confidential.
                    @type is_confidential A bool instance.
                    """
                    comm_channel = gmDemographicRecord.create_comm_channel (
                            comm_medium = comm_medium,
                            url = url,
                            is_confidential = is_confidential,
                            pk_channel_type = pk_channel_type,
                            pk_identity = self.pk_obj
                    )
                    return comm_channel
            #--------------------------------------------------------
            def unlink_comm_channel(self, comm_channel=None):
                    gmDemographicRecord.delete_comm_channel (
                            pk = comm_channel['pk_lnk_identity2comm'],
                            pk_patient = self.pk_obj
                    )
            #--------------------------------------------------------
            # contacts API
            #--------------------------------------------------------
            def get_addresses(self, address_type=None):
                    cmd = "SELECT pk_address FROM dem.v_pat_addresses WHERE pk_identity = %(pat)s"
                    args = {'pat': self.pk_obj}
                    if address_type is not None:
                            cmd = cmd + " AND address_type = %(typ)s"
                            args['typ'] = address_type

                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)
                    return [
                            gmDemographicRecord.cPatientAddress(aPK_obj = {
                                    'pk_adr': r['pk_address'],
                                    'pk_pat': self.pk_obj
                            }) for r in rows
                    ]

            #--------------------------------------------------------
            def link_address(self, number=None, street=None, postcode=None, urb=None, region_code=None, country_code=None, subunit=None, suburb=None, id_type=None, address=None, adr_type=None):
                    """Link an address with a patient, creating the address if it does not exists.

                    @param id_type The primary key of the address type.
                    """
                    if address is None:
                            address = gmDemographicRecord.create_address (
                                    country_code = country_code,
                                    region_code = region_code,
                                    urb = urb,
                                    suburb = suburb,
                                    postcode = postcode,
                                    street = street,
                                    number = number,
                                    subunit = subunit
                            )
                    if address is None:
                            return None

                    # already linked ?
                    cmd = "SELECT id_address FROM dem.lnk_person_org_address WHERE id_identity = %(pat)s AND id_address = %(adr)s"
                    args = {'pat': self.pk_obj, 'adr': address['pk_address']}
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
                    # no, link to person
                    if not rows:
                            args = {'pk_person': self.pk_obj, 'adr': address['pk_address'], 'type': id_type}
                            cmd = """
                                    INSERT INTO dem.lnk_person_org_address(id_identity, id_address)
                                    VALUES (%(pk_person)s, %(adr)s)
                                    RETURNING id_address"""
                            rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], return_data = True)
                    pk_data = {
                            'pk_adr': rows[0]['id_address'],
                            'pk_pat': self.pk_obj
                    }
                    linked_adr = gmDemographicRecord.cPatientAddress(aPK_obj = pk_data)
                    # possibly change type
                    if id_type is None:
                            if adr_type is not None:
                                    id_type = gmDemographicRecord.create_address_type(address_type = adr_type)
                    if id_type is not None:
                            linked_adr['pk_address_type'] = id_type
                            linked_adr.save()
                    return linked_adr

            #----------------------------------------------------------------------
            def unlink_address(self, address=None, pk_address=None):
                    """Remove an address from the patient.

                    The address itself stays in the database.
                    The address can be either cAdress or cPatientAdress.
                    """
                    if pk_address is None:
                            args = {'person': self.pk_obj, 'adr': address['pk_address']}
                    else:
                            args = {'person': self.pk_obj, 'adr': pk_address}
                    cmd = """
                            DELETE FROM dem.lnk_person_org_address
                            WHERE
                                    dem.lnk_person_org_address.id_identity = %(person)s
                                            AND
                                    dem.lnk_person_org_address.id_address = %(adr)s
                                            AND
                                    NOT EXISTS(SELECT 1 FROM bill.bill WHERE fk_receiver_address = dem.lnk_person_org_address.id)
                            """
                    gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
            #----------------------------------------------------------------------
            # bills API
            #----------------------------------------------------------------------
            def get_bills(self, order_by=None, pk_patient=None):
                    return gmBilling.get_bills (
                            order_by = order_by,
                            pk_patient = self.pk_obj
                    )

            bills = property(get_bills, lambda x:x)
            #----------------------------------------------------------------------
            # relatives API
            #----------------------------------------------------------------------
            def get_relatives(self):
                    cmd = """
                            SELECT
                                    d_rt.description,
                                    d_vap.*
                            FROM
                                    dem.v_all_persons d_vap,
                                    dem.relation_types d_rt,
                                    dem.lnk_person2relative d_lp2r
                            WHERE
                                    (       d_lp2r.id_identity = %(pk)s
                                                    AND
                                            d_vap.pk_identity = d_lp2r.id_relative
                                                    AND
                                            d_rt.id = d_lp2r.id_relation_type
                                    ) or (
                                            d_lp2r.id_relative = %(pk)s
                                                    AND
                                            d_vap.pk_identity = d_lp2r.id_identity
                                                    AND
                                            d_rt.inverse = d_lp2r.id_relation_type
                                    )"""
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': {'pk': self.pk_obj}}])
                    if len(rows) == 0:
                            return []
                    return [(row[0], cPerson(row = {'data': row[1:], 'idx':idx, 'pk_field': 'pk_identity'})) for row in rows]
            #--------------------------------------------------------
            def link_new_relative(self, rel_type = 'parent'):
                    # create new relative
                    id_new_relative = create_dummy_identity()

                    relative = cPerson(aPK_obj=id_new_relative)
                    # pre-fill with data from ourselves
    #               relative.copy_addresses(self)
                    relative.add_name( '**?**', self.get_names()['lastnames'])
                    # and link the two
                    if 'relatives' in self._ext_cache:
                            del self._ext_cache['relatives']
                    cmd = """
                            insert into dem.lnk_person2relative (
                                    id_identity, id_relative, id_relation_type
                            ) values (
                                    %s, %s, (select id from dem.relation_types where description = %s)
                            )"""
                    rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': [self.ID, id_new_relative, rel_type  ]}])
                    return True
            #----------------------------------------------------------------------
            def delete_relative(self, relation):
                    # unlink only, don't delete relative itself
                    self.set_relative(None, relation)
            #--------------------------------------------------------
            def _get_emergency_contact_from_database(self):
                    if self._payload[self._idx['pk_emergency_contact']] is None:
                            return None
                    return cPerson(self._payload[self._idx['pk_emergency_contact']])

            emergency_contact_in_database = property(_get_emergency_contact_from_database, lambda x:x)

            #----------------------------------------------------------------------
            # age/dob related
            #----------------------------------------------------------------------
            def get_formatted_dob(self, format='%Y %b %d', none_string=None, honor_estimation=False):
                    return gmDateTime.format_dob (
                            self._payload[self._idx['dob']],
                            format = format,
                            none_string = none_string,
                            dob_is_estimated = self._payload[self._idx['dob_is_estimated']] and honor_estimation
                    )

            #----------------------------------------------------------------------
            def get_medical_age(self, at_date=None):
                    dob = self['dob']
                    if dob is None:
                            return '??'

                    if at_date is None:
                            if self['deceased']:
                                    at_date = self['deceased']
                                    _at_desc = _('date of death')
                            else:
                                    at_date = gmDateTime.pydt_now_here()
                                    _at_desc = _('now')
                    else:
                            _at_desc = _('explicit')
                    if dob > at_date:
                            return _('invalid age: DOB [%s] after reference date [%s] (%s)') % (dob, at_date, _at_desc)

                    return '%s%s' % (
                            gmTools.bool2subst (
                                    self._payload[self._idx['dob_is_estimated']],
                                    gmTools.u_almost_equal_to,
                                    ''
                            ),
                            gmDateTime.format_apparent_age_medically (
                                    age = gmDateTime.calculate_apparent_age (
                                            start = dob,
                                            end = at_date
                                    )
                            )
                    )

            #----------------------------------------------------------------------
            def dob_in_range(self, min_distance='1 week', max_distance='1 week'):
                    if self['dob'] is None:
                            return False

                    cmd = 'select dem.dob_is_in_range(%(dob)s, %(min)s, %(max)s)'
                    rows, idx = gmPG2.run_ro_queries (
                            queries = [{
                                    'cmd': cmd,
                                    'args': {'dob': self['dob'], 'min': min_distance, 'max': max_distance}
                            }]
                    )
                    return rows[0][0]

            #----------------------------------------------------------------------
            def _get_current_birthday_passed(self):
                    if self['dob'] is None:
                            return None
                    now = gmDateTime.pydt_now_here()
                    if now.month < self['dob'].month:
                            return False
                    if now.month > self['dob'].month:
                            return True
                    # -> DOB is this month
                    if now.day < self['dob'].day:
                            return False
                    if now.day > self['dob'].day:
                            return True
                    # -> DOB is today
                    return False

            current_birthday_passed = property(_get_current_birthday_passed)

            #----------------------------------------------------------------------
            def _get_birthday_this_year(self):
                    if self['dob'] is None:
                            return None
                    now = gmDateTime.pydt_now_here()
                    return gmDateTime.pydt_replace (
                            dt = self['dob'],
                            year = now.year,
                            strict = False
                    )

            birthday_this_year = property(_get_birthday_this_year)

            #----------------------------------------------------------------------
            def _get_birthday_next_year(self):
                    if self['dob'] is None:
                            return None
                    now = gmDateTime.pydt_now_here()
                    return gmDateTime.pydt_replace (
                            dt = self['dob'],
                            year = now.year + 1,
                            strict = False
                    )

            birthday_next_year = property(_get_birthday_next_year)

            #----------------------------------------------------------------------
            def _get_birthday_last_year(self):
                    if self['dob'] is None:
                            return None
                    now = gmDateTime.pydt_now_here()
                    return gmDateTime.pydt_replace (
                            dt = self['dob'],
                            year = now.year - 1,
                            strict = False
                    )

            birthday_last_year = property(_get_birthday_last_year, lambda x:x)

            #----------------------------------------------------------------------
            # practice related
            #----------------------------------------------------------------------
            def get_last_encounter(self):
                    cmd = 'select * from clin.v_most_recent_encounters where pk_patient=%s'
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': [self._payload[self._idx['pk_identity']]]}])
                    if len(rows) > 0:
                            return rows[0]
                    else:
                            return None
            #--------------------------------------------------------
            def get_messages(self, order_by=None):
                    return gmProviderInbox.get_inbox_messages(pk_patient = self._payload[self._idx['pk_identity']], order_by = order_by)

            messages = property(get_messages, lambda x:x)
            #--------------------------------------------------------
            def _get_overdue_messages(self):
                    return gmProviderInbox.get_overdue_messages(pk_patient = self._payload[self._idx['pk_identity']])

            overdue_messages = property(_get_overdue_messages, lambda x:x)

            #--------------------------------------------------------
            def delete_message(self, pk=None):
                    return gmProviderInbox.delete_inbox_message(inbox_message = pk)

            #--------------------------------------------------------
            def _get_dynamic_hints(self, pk_encounter=None):
                    return gmAutoHints.get_hints_for_patient (
                            pk_identity = self._payload[self._idx['pk_identity']],
                            pk_encounter = pk_encounter
                    )

            dynamic_hints = property(_get_dynamic_hints, lambda x:x)

            #--------------------------------------------------------
            def _get_suppressed_hints(self):
                    return gmAutoHints.get_suppressed_hints(pk_identity = self._payload[self._idx['pk_identity']])

            suppressed_hints = property(_get_suppressed_hints, lambda x:x)

            #--------------------------------------------------------
            def _get_primary_provider_identity(self):
                    if self._payload[self._idx['pk_primary_provider']] is None:
                            return None
                    cmd = "SELECT * FROM dem.v_all_persons WHERE pk_identity = (SELECT pk_identity FROM dem.v_staff WHERE pk_staff = %(pk_staff)s)"
                    args = {'pk_staff': self._payload[self._idx['pk_primary_provider']]}
                    rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)
                    if len(rows) == 0:
                            return None
                    return cPerson(row = {'data': rows[0], 'idx': idx, 'pk_field': 'pk_identity'})

            primary_provider_identity = property(_get_primary_provider_identity, lambda x:x)

            #--------------------------------------------------------
            def _get_primary_provider(self):
                    if self._payload[self._idx['pk_primary_provider']] is None:
                            return None
                    from Gnumed.business import gmStaff
                    return gmStaff.cStaff(aPK_obj = self._payload[self._idx['pk_primary_provider']])

            primary_provider = property(_get_primary_provider, lambda x:x)

            #----------------------------------------------------------------------
            # convenience
            #----------------------------------------------------------------------
            def get_subdir_name(self):
                    """Format patient demographics into patient specific path name fragment."""

                    return gmTools.fname_sanitize('%s-%s-%s-ID_%s' % (
                            self._payload[self._idx['lastnames']],
                            self._payload[self._idx['firstnames']],
                            self.get_formatted_dob(format = '%Y-%m-%d'),
                            self._payload[self._idx['pk_identity']]         # make unique across "same" patients
                    ))
                    #).replace (
                    #       u'\u2248', u''                  # "approximately", having been added by dob_is_estimated
                    #)

            subdir_name = property(get_subdir_name, lambda x:x)

    #============================================================
    def identity_is_patient(pk_identity):
            cmd = 'SELECT 1 FROM clin.patient WHERE fk_identity = %(pk_pat)s'
            args = {'pk_pat': pk_identity}
            rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
            if len(rows) == 0:
                    return False
            return True

    #------------------------------------------------------------
    def turn_identity_into_patient(pk_identity):
            cmd = """
                    INSERT INTO clin.patient (fk_identity)
                    SELECT %(pk_ident)s WHERE NOT EXISTS (
                            SELECT 1 FROM clin.patient c_p WHERE fk_identity = %(pk_ident)s
                    )"""
            args = {'pk_ident': pk_identity}
            queries = [{'cmd': cmd, 'args': args}]
            gmPG2.run_rw_queries(queries = queries)
            return True

    #============================================================
    # helper functions
    #------------------------------------------------------------
    _yield = lambda *x:None

    def set_yielder(yielder):
            if not callable(yielder):
                    raise TypeError('yielder <%s> is not callable' % yielder)
            global _yield
            _yield = yielder
            _log.debug('setting yielder to <%s>', yielder)

    #============================================================
    class cPatient(cPerson):
            """Represents a person which is a patient.

            - a specializing subclass of cPerson turning it into a patient
            - its use is to cache subobjects like EMR and document folder
            """
            def __init__(self, aPK_obj=None, row=None):
                    cPerson.__init__(self, aPK_obj = aPK_obj, row = row)
                    self.__emr_access_lock = threading.Lock()
                    self.__emr = None
                    self.__doc_folder = None

            #--------------------------------------------------------
            def cleanup(self):
                    """Do cleanups before dying.

                    - note that this may be called in a thread
                    """
                    if self.__emr is not None:
                            self.__emr.cleanup()
                    if self.__doc_folder is not None:
                            self.__doc_folder.cleanup()
                    cPerson.cleanup(self)

            #----------------------------------------------------------------
            def ensure_has_allergy_state(self, pk_encounter=None):
                    from Gnumed.business.gmAllergy import ensure_has_allergy_state
                    ensure_has_allergy_state(encounter = pk_encounter)
                    return True

            #----------------------------------------------------------
            def get_emr(self):
                    _log.debug('accessing EMR for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())

                    # fast path: already set, just return it
                    if self.__emr is not None:
                            return self.__emr

                    stack_logged = False
                    got_lock = self.__emr_access_lock.acquire(False)
                    if not got_lock:
                            # do some logging as we failed to get the lock
                            call_stack = inspect.stack()
                            call_stack.reverse()
                            for idx in range(1, len(call_stack)):
                                    caller = call_stack[idx]
                                    _log.debug('%s[%s] @ [%s] in [%s]', ' '* idx, caller[3], caller[2], caller[1])
                            del call_stack
                            stack_logged = True
                            # now loop a bit
                            for idx in range(500):
                                    _yield()
                                    time.sleep(0.1)
                                    _yield()
                                    got_lock = self.__emr_access_lock.acquire(False)
                                    if got_lock:
                                            break
                            if not got_lock:
                                    _log.error('still failed to acquire EMR access lock, aborting (thread [%s])', threading.get_ident())
                                    self.__emr_access_lock.release()
                                    raise AttributeError('cannot lock access to EMR for identity [%s]' % self._payload[self._idx['pk_identity']])

                    _log.debug('pulling chart for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())
                    if not stack_logged:
                            # do some logging as we are pulling the chart for the first time
                            call_stack = inspect.stack()
                            call_stack.reverse()
                            for idx in range(1, len(call_stack)):
                                    caller = call_stack[idx]
                                    _log.debug('%s[%s] @ [%s] in [%s]', ' '* idx, caller[3], caller[2], caller[1])
                            del call_stack
                            stack_logged = True

                    self.is_patient = True
                    from Gnumed.business import gmClinicalRecord
                    emr = gmClinicalRecord.cClinicalRecord(aPKey = self._payload[self._idx['pk_identity']])

                    _log.debug('returning EMR for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())
                    self.__emr = emr
                    self.__emr_access_lock.release()
                    return self.__emr

            emr = property(get_emr, lambda x:x)

            #----------------------------------------------------------
            def get_document_folder(self):
                    if self.__doc_folder is None:
                            self.__doc_folder = cDocumentFolder(aPKey = self._payload[self._idx['pk_identity']])
                    return self.__doc_folder

            document_folder = property(get_document_folder, lambda x:x)

    #============================================================
    class gmCurrentPatient(gmBorg.cBorg):
            """Patient Borg to hold the currently active patient.

            There may be many instances of this but they all share state.

            The underlying dem.identity row must have .deleted set to FALSE.

            The sequence of events when changing the active patient:

                    1) Registered callbacks are run.
                            Those are run synchronously. If a callback
                            returns False or throws an exception the
                            patient switch is aborted. Callback code
                            can rely on the patient still being active
                            and to not go away until it returns. It
                            is not passed any arguments and must return
                            False or True.

                    2) Signal "pre_patient_unselection" is sent.
                            This does not wait for nor check results.
                            The keyword pk_identity contains the
                            PK of the person being switched away
                            from.

                    3) the current patient is unset (gmNull.cNull)

                    4) Signal "current_patient_unset" is sent
                            At this point resetting GUI fields to
                            empty should be done. The active patient
                            is not there anymore.

                            This does not wait for nor check results.

                    5) The current patient is set to the new value.
                            The new patient can also remain gmNull.cNull
                            in case the calling code explicitely unset
                            the current patient.

                    6) Signal "post_patient_selection" is sent.
                            Code listening to this signal can
                            assume that the new patient is
                            already active.
            """
            def __init__(self, patient=None, forced_reload=False):
                    """Change or get currently active patient.

                    patient:
                    * None: get currently active patient
                    * -1: unset currently active patient
                    * cPatient instance: set active patient if possible
                    """
                    # make sure we do have a patient pointer
                    try:
                            self.patient
                    except AttributeError:
                            self.patient = gmNull.cNull()
                            self.__register_interests()
                            # set initial lock state,
                            # this lock protects against activating another patient
                            # when we are controlled from a remote application
                            self.__lock_depth = 0
                            # initialize callback state
                            self.__callbacks_before_switching_away_from_patient = []

                    # user wants copy of current patient
                    if patient is None:
                            return None

                    # do nothing if patient is locked
                    if self.locked:
                            _log.error('patient [%s] is locked, cannot change to [%s]' % (self.patient['pk_identity'], patient))
                            return None

                    # user wants to explicitly unset current patient
                    if patient == -1:
                            _log.debug('explicitly unsetting current patient')
                            if not self.__run_callbacks_before_switching_away_from_patient():
                                    _log.error('not unsetting current patient, at least one pre-change callback failed')
                                    return None
                            self.__send_pre_unselection_notification()
                            self.patient.cleanup()
                            self.patient = gmNull.cNull()
                            self.__send_unselection_notification()
                            # give it some time
                            time.sleep(0.5)
                            self.__send_selection_notification()
                            return None

                    # must be cPatient instance, then
                    if not isinstance(patient, cPatient):
                            _log.error('cannot set active patient to [%s], must be either None, -1 or cPatient instance' % str(patient))
                            raise TypeError('gmPerson.gmCurrentPatient.__init__(): <patient> must be None, -1 or cPatient instance but is: %s' % str(patient))

                    # same ID, no change needed
                    if (self.patient['pk_identity'] == patient['pk_identity']) and not forced_reload:
                            return None

                    if patient['is_deleted']:
                            _log.error('cannot set active patient to disabled dem.identity row: %s', patient)
                            raise ValueError('gmPerson.gmCurrentPatient.__init__(): <patient> is disabled: %s' % patient)

                    # user wants different patient
                    _log.info('patient change [%s] -> [%s] requested', self.patient['pk_identity'], patient['pk_identity'])

                    if not self.__run_callbacks_before_switching_away_from_patient():
                            _log.error('not changing current patient, at least one pre-change callback failed')
                            return None

                    # everything seems swell
                    self.__send_pre_unselection_notification()
                    self.patient.cleanup()
                    self.patient = gmNull.cNull()
                    self.__send_unselection_notification()
                    # give it some time
                    time.sleep(0.5)
                    self.patient = patient
                    # for good measure ...
                    # however, actually we want to get rid of that
                    self.patient.emr
                    self.__send_selection_notification()

                    return None

            #--------------------------------------------------------
            def __register_interests(self):
                    gmDispatcher.connect(signal = 'gm_table_mod', receiver = self._on_database_signal)

            #--------------------------------------------------------
            def _on_database_signal(self, **kwds):
                    # we don't have a patient: don't process signals
                    if isinstance(self.patient, gmNull.cNull):
                            return True

                    # we only care about identity and name changes
                    if kwds['table'] not in ['dem.identity', 'dem.names']:
                            return True

                    # signal is not about our patient: ignore signal
                    if int(kwds['pk_identity']) != self.patient.ID:
                            return True

                    if kwds['table'] == 'dem.identity':
                            # we don't care about newly INSERTed or DELETEd patients
                            if kwds['operation'] != 'UPDATE':
                                    return True

                    self.patient.refetch_payload()
                    return True

            #--------------------------------------------------------
            # external API
            #--------------------------------------------------------
            def register_before_switching_from_patient_callback(self, callback=None):
                    # callbacks are run synchronously before
                    # switching *away* from the current patient,
                    # if a callback returns false the current
                    # patient will not be switched away from,
                    # callbacks will not be passed any arguments
                    if not callable(callback):
                            raise TypeError('callback [%s] not callable' % callback)

                    self.__callbacks_before_switching_away_from_patient.append(callback)

            #--------------------------------------------------------
            def _get_connected(self):
                    return (not isinstance(self.patient, gmNull.cNull))

            connected = property(_get_connected, lambda x:x)

            #--------------------------------------------------------
            def _get_locked(self):
                    return (self.__lock_depth > 0)

            def _set_locked(self, locked):
                    if locked:
                            self.__lock_depth = self.__lock_depth + 1
                            gmDispatcher.send(signal = 'patient_locked', sender = self.__class__.__name__)
                    else:
                            if self.__lock_depth == 0:
                                    _log.error('lock/unlock imbalance, tried to refcount lock depth below 0')
                                    return
                            else:
                                    self.__lock_depth = self.__lock_depth - 1
                            gmDispatcher.send(signal = 'patient_unlocked', sender = self.__class__.__name__)

            locked = property(_get_locked, _set_locked)

            #--------------------------------------------------------
            def force_unlock(self):
                    _log.info('forced patient unlock at lock depth [%s]' % self.__lock_depth)
                    self.__lock_depth = 0
                    gmDispatcher.send(signal = 'patient_unlocked', sender = self.__class__.__name__)

            #--------------------------------------------------------
            # patient change handling
            #--------------------------------------------------------
            def __run_callbacks_before_switching_away_from_patient(self):
                    if isinstance(self.patient, gmNull.cNull):
                            return True

                    for call_back in self.__callbacks_before_switching_away_from_patient:
                            try:
                                    successful = call_back()
                            except Exception:
                                    _log.exception('callback [%s] failed', call_back)
                                    print("*** pre-change callback failed ***")
                                    print(type(call_back))
                                    print(call_back)
                                    return False

                            if not successful:
                                    _log.error('callback [%s] returned False', call_back)
                                    return False

                    return True

            #--------------------------------------------------------
            def __send_pre_unselection_notification(self):
                    """Sends signal when current patient is about to be unset.

                    This does NOT wait for signal handlers to complete.
                    """
                    kwargs = {
                            'signal': 'pre_patient_unselection',
                            'sender': self.__class__.__name__,
                            'pk_identity': self.patient['pk_identity']
                    }
                    gmDispatcher.send(**kwargs)

            #--------------------------------------------------------
            def __send_unselection_notification(self):
                    """Sends signal when the previously active patient has
                       been unset during a change of active patient.

                    This is the time to initialize GUI fields to empty values.

                    This does NOT wait for signal handlers to complete.
                    """
                    kwargs = {
                            'signal': 'current_patient_unset',
                            'sender': self.__class__.__name__
                    }
                    gmDispatcher.send(**kwargs)

            #--------------------------------------------------------
            def __send_selection_notification(self):
                    """Sends signal when another patient has actually been made active."""
                    kwargs = {
                            'signal': 'post_patient_selection',
                            'sender': self.__class__.__name__,
                            'pk_identity': self.patient['pk_identity'],
                            'current_patient': self
                    }
                    gmDispatcher.send(**kwargs)

            #--------------------------------------------------------
            # __getattr__ handling
            #--------------------------------------------------------
            def __getattr__(self, attribute):
                    # override __getattr__ here, not __getattribute__ because
                    # the former is used _after_ ordinary attribute lookup
                    # failed while the latter is applied _before_ ordinary
                    # lookup (and is easy to drive into infinite recursion),
                    # this is also why subsequent access to self.patient
                    # simply returns the .patient member value :-)
                    if attribute == 'patient':
                            raise AttributeError
                    if isinstance(self.patient, gmNull.cNull):
                            _log.error("[%s]: cannot getattr(%s, '%s'), patient attribute not connected to a patient", self, self.patient, attribute)
                            raise AttributeError("[%s]: cannot getattr(%s, '%s'), patient attribute not connected to a patient" % (self, self.patient, attribute))
                    return getattr(self.patient, attribute)

            #--------------------------------------------------------
            # __get/setitem__ handling
            #--------------------------------------------------------
            def __getitem__(self, attribute = None):
                    """Return any attribute if known how to retrieve it by proxy.
                    """
                    return self.patient[attribute]

            #--------------------------------------------------------
            def __setitem__(self, attribute, value):
                    self.patient[attribute] = value

    #============================================================
    # match providers
    #============================================================
    class cMatchProvider_Provider(gmMatchProvider.cMatchProvider_SQL2):
            def __init__(self):
                    gmMatchProvider.cMatchProvider_SQL2.__init__(
                            self,
                            queries = [
                                    """SELECT
                                                    pk_staff AS data,
                                                    short_alias || ' (' || coalesce(title, '') || ' ' || firstnames || ' ' || lastnames || ')' AS list_label,
                                                    short_alias || ' (' || coalesce(title, '') || ' ' || firstnames || ' ' || lastnames || ')' AS field_label
                                            FROM dem.v_staff
                                            WHERE
                                                    is_active AND (
                                                            short_alias %(fragment_condition)s OR
                                                            firstnames %(fragment_condition)s OR
                                                            lastnames %(fragment_condition)s OR
                                                            db_user %(fragment_condition)s
                                                    )
                                    """
                            ]
                    )
                    self.setThresholds(1, 2, 3)

    #============================================================
    # convenience functions
    #============================================================
    def create_name(pk_person, firstnames, lastnames, active=False):
            queries = [{
                    'cmd': "select dem.add_name(%s, %s, %s, %s)",
                    'args': [pk_person, firstnames, lastnames, active]
            }]
            rows, idx = gmPG2.run_rw_queries(queries=queries, return_data=True)
            name = cPersonName(aPK_obj = rows[0][0])
            return name

    #============================================================
    def create_identity(gender=None, dob=None, lastnames=None, firstnames=None, comment=None):

            cmd1 = "INSERT INTO dem.identity (gender, dob, comment) VALUES (%s, %s, %s)"
            cmd2 = """
    INSERT INTO dem.names (
            id_identity, lastnames, firstnames
    ) VALUES (
            currval('dem.identity_pk_seq'), coalesce(%s, 'xxxDEFAULTxxx'), coalesce(%s, 'xxxDEFAULTxxx')
    ) RETURNING id_identity"""
    #       cmd2 = u"select dem.add_name(currval('dem.identity_pk_seq')::integer, coalesce(%s, 'xxxDEFAULTxxx'), coalesce(%s, 'xxxDEFAULTxxx'), True)"
            try:
                    rows, idx = gmPG2.run_rw_queries (
                            queries = [
                                    {'cmd': cmd1, 'args': [gender, dob, comment]},
                                    {'cmd': cmd2, 'args': [lastnames, firstnames]}
                                    #{'cmd': cmd2, 'args': [firstnames, lastnames]}
                            ],
                            return_data = True
                    )
            except Exception:
                    _log.exception('cannot create identity')
                    gmLog2.log_stack_trace()
                    return None
            ident = cPerson(aPK_obj = rows[0][0])
            gmHooks.run_hook_script(hook = 'post_person_creation')
            return ident

    #============================================================
    def disable_identity(pk_identity):
            _log.info('disabling identity [%s]', pk_identity)
            cmd = "UPDATE dem.identity SET deleted = true WHERE pk = %(pk)s"
            args = {'pk': pk_identity}
            gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
            return True

    #============================================================
    def create_dummy_identity():
            cmd = "INSERT INTO dem.identity(gender) VALUES (NULL::text) RETURNING pk"
            rows, idx = gmPG2.run_rw_queries (
                    queries = [{'cmd': cmd}],
                    return_data = True
            )
            return gmDemographicRecord.cPerson(aPK_obj = rows[0][0])

    #============================================================
    def identity_exists(pk_identity):
            cmd = 'SELECT EXISTS(SELECT 1 FROM dem.identity where pk = %(pk)s)'
            args = {'pk': pk_identity}
            rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
            return rows[0][0]

    #============================================================
    def set_active_patient(patient=None, forced_reload=False):
            """Set active patient.

            If patient is -1 the active patient will be UNset.
            """
            if isinstance(patient, gmCurrentPatient):
                    return True

            if isinstance(patient, cPatient):
                    pat = patient
            elif isinstance(patient, cPerson):
                    pat = pat.as_patient
            elif patient == -1:
                    pat = patient
            else:
                    # maybe integer ?
                    success, pk = gmTools.input2int(initial = patient, minval = 1)
                    if not success:
                            raise ValueError('<patient> must be either -1, >0, or a cPatient, cPerson or gmCurrentPatient instance, is: %s' % patient)
                    # but also valid patient ID ?
                    try:
                            pat = cPatient(aPK_obj = pk)
                    except Exception:
                            _log.exception('identity [%s] not found' % patient)
                            return False

            # attempt to switch
            try:
                    gmCurrentPatient(patient = pat, forced_reload = forced_reload)
            except Exception:
                    _log.exception('error changing active patient to [%s]' % patient)
                    return False

            return True

    #============================================================
    # gender related
    #------------------------------------------------------------
    def get_gender_list():
            """Retrieves the list of known genders from the database."""
            global __gender_idx
            global __gender_list

            if __gender_list is None:
                    cmd = "SELECT tag, l10n_tag, label, l10n_label, sort_weight FROM dem.v_gender_labels ORDER BY sort_weight DESC"
                    __gender_list, __gender_idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd}], get_col_idx = True)
                    _log.debug('genders in database: %s' % __gender_list)

            return (__gender_list, __gender_idx)

    #------------------------------------------------------------
    map_gender2mf = {
            'm': 'm',
            'f': 'f',
            'tf': 'f',
            'tm': 'm',
            'h': 'mf'
    }

    # https://tools.ietf.org/html/rfc6350#section-6.2.7
    # M F O N U
    map_gender2vcard = {
            'm': 'M',
            'f': 'F',
            'tf': 'F',
            'tm': 'M',
            'h': 'O',
            None: 'U'
    }

    #------------------------------------------------------------
    # maps GNUmed related i18n-aware gender specifiers to a unicode symbol
    map_gender2symbol = {
            'm': '\u2642',
            'f': '\u2640',
            'tf': '\u26A5\u2640',
    #       'tf': u'\u2642\u2640-\u2640',
            'tm': '\u26A5\u2642',
    #       'tm': u'\u2642\u2640-\u2642',
            'h': '\u26A5',
    #       'h': u'\u2642\u2640',
            None: '?\u26A5?'
    }
    #------------------------------------------------------------
    def map_gender2string(gender=None):
            """Maps GNUmed related i18n-aware gender specifiers to a human-readable string."""

            global __gender2string_map

            if __gender2string_map is None:
                    genders, idx = get_gender_list()
                    __gender2string_map = {
                            'm': _('male'),
                            'f': _('female'),
                            'tf': '',
                            'tm': '',
                            'h': '',
                            None: _('unknown gender')
                    }
                    for g in genders:
                            __gender2string_map[g[idx['l10n_tag']]] = g[idx['l10n_label']]
                            __gender2string_map[g[idx['tag']]] = g[idx['l10n_label']]
                    _log.debug('gender -> string mapping: %s' % __gender2string_map)

            return __gender2string_map[gender]
    #------------------------------------------------------------
    def map_gender2salutation(gender=None):
            """Maps GNUmed related i18n-aware gender specifiers to a human-readable salutation."""

            global __gender2salutation_map

            if __gender2salutation_map is None:
                    genders, idx = get_gender_list()
                    __gender2salutation_map = {
                            'm': _('Mr'),
                            'f': _('Mrs'),
                            'tf': '',
                            'tm': '',
                            'h': '',
                            None: ''
                    }
                    for g in genders:
                            __gender2salutation_map[g[idx['l10n_tag']]] = __gender2salutation_map[g[idx['tag']]]
                            __gender2salutation_map[g[idx['label']]] = __gender2salutation_map[g[idx['tag']]]
                            __gender2salutation_map[g[idx['l10n_label']]] = __gender2salutation_map[g[idx['tag']]]
                    _log.debug('gender -> salutation mapping: %s' % __gender2salutation_map)

            return __gender2salutation_map[gender]
    #------------------------------------------------------------
    def map_firstnames2gender(firstnames=None):
            """Try getting the gender for the given first name."""

            if firstnames is None:
                    return None

            rows, idx = gmPG2.run_ro_queries(queries = [{
                    'cmd': "SELECT gender FROM dem.name_gender_map WHERE name ILIKE %(fn)s LIMIT 1",
                    'args': {'fn': firstnames}
            }])

            if len(rows) == 0:
                    return None

            return rows[0][0]
    #============================================================
    def get_person_IDs():
            cmd = 'SELECT pk FROM dem.identity'
            rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd}], get_col_idx = False)
            return [ r[0] for r in rows ]

    #============================================================
    def get_persons_from_pks(pks=None):
            return [ cPerson(aPK_obj = pk) for pk in pks ]

    #============================================================
    def get_person_from_xdt(filename=None, encoding=None, dob_format=None):
            from Gnumed.business import gmXdtObjects
            return gmXdtObjects.read_person_from_xdt(filename=filename, encoding=encoding, dob_format=dob_format)

    #============================================================
    def get_persons_from_pracsoft_file(filename=None, encoding='ascii'):
            from Gnumed.business import gmPracSoftAU
            return gmPracSoftAU.read_persons_from_pracsoft_file(filename=filename, encoding=encoding)

    #============================================================
    # main/testing
    #============================================================
    if __name__ == '__main__':

            if len(sys.argv) == 1:
                    sys.exit()

            if sys.argv[1] != 'test':
                    sys.exit()

            gmDateTime.init()

            #--------------------------------------------------------
            def test_set_active_pat():

                    ident = cPerson(1)
                    print("setting active patient with", ident)
                    set_active_patient(patient=ident)

                    patient = cPatient(12)
                    print("setting active patient with", patient)
                    set_active_patient(patient=patient)

                    pat = gmCurrentPatient()
                    print(pat['dob'])
                    #pat['dob'] = 'test'

    #               staff = cStaff()
    #               print("setting active patient with", staff)
    #               set_active_patient(patient=staff)

                    print("setting active patient with -1")
                    set_active_patient(patient=-1)
            #--------------------------------------------------------
            def test_dto_person():
                    dto = cDTO_person()
                    dto.firstnames = 'Sepp'
                    dto.lastnames = 'Herberger'
                    dto.gender = 'male'
                    dto.dob = pyDT.datetime.now(tz=gmDateTime.gmCurrentLocalTimezone)
                    print(dto)

                    print(dto['firstnames'])
                    print(dto['lastnames'])
                    print(dto['gender'])
                    print(dto['dob'])

                    for key in dto.keys():
                            print(key)
            #--------------------------------------------------------
            def test_identity():
                    # create patient
                    print('\n\nCreating identity...')
                    new_identity = create_identity(gender='m', dob='2005-01-01', lastnames='test lastnames', firstnames='test firstnames')
                    print('Identity created: %s' % new_identity)

                    print('\nSetting title and gender...')
                    new_identity['title'] = 'test title';
                    new_identity['gender'] = 'f';
                    new_identity.save_payload()
                    print('Refetching identity from db: %s' % cPerson(aPK_obj=new_identity['pk_identity']))

                    print('\nGetting all names...')
                    for a_name in new_identity.get_names():
                            print(a_name)
                    print('Active name: %s' % (new_identity.get_active_name()))
                    print('Setting nickname...')
                    new_identity.set_nickname(nickname='test nickname')
                    print('Refetching all names...')
                    for a_name in new_identity.get_names():
                            print(a_name)
                    print('Active name: %s' % (new_identity.get_active_name()))

                    print('\nIdentity occupations: %s' % new_identity['occupations'])
                    print('Creating identity occupation...')
                    new_identity.link_occupation('test occupation')
                    print('Identity occupations: %s' % new_identity['occupations'])

                    print('\nIdentity addresses: %s' % new_identity.get_addresses())
                    print('Creating identity address...')
                    # make sure the state exists in the backend
                    new_identity.link_address (
                            number = 'test 1234',
                            street = 'test street',
                            postcode = 'test postcode',
                            urb = 'test urb',
                            region_code = 'SN',
                            country_code = 'DE'
                    )
                    print('Identity addresses: %s' % new_identity.get_addresses())

                    print('\nIdentity communications: %s' % new_identity.get_comm_channels())
                    print('Creating identity communication...')
                    new_identity.link_comm_channel('homephone', '1234566')
                    print('Identity communications: %s' % new_identity.get_comm_channels())
            #--------------------------------------------------------
            def test_name():
                    for pk in range(1,16):
                            name = cPersonName(aPK_obj=pk)
                            print(name.description)
                            print('  ', name)
            #--------------------------------------------------------
            def test_gender_list():
                    genders, idx = get_gender_list()
                    print("\n\nRetrieving gender enum (tag, label, weight):")
                    for gender in genders:
                            print("%s, %s, %s" % (gender[idx['tag']], gender[idx['l10n_label']], gender[idx['sort_weight']]))
            #--------------------------------------------------------
            def test_export_area():
                    person = cPerson(aPK_obj = 12)
                    print(person)
                    print(person.export_area)
                    print(person.export_area.items)
            #--------------------------------------------------------
            def test_ext_id():
                    person = cPerson(aPK_obj = 9)
                    print(person.get_external_ids(id_type='Fachgebiet', issuer='Ärztekammer'))
                    #print(person.get_external_ids()
                    person = cPerson(aPK_obj = 12)
                    suggestions = person.suggest_external_ids(target = 'Orthanc')
                    print(suggestions)
                    print([ (sugg.rsplit('#', 2)[0]).strip('-') for sugg in suggestions ])

            #--------------------------------------------------------
            def test_vcf():
                    person = cPerson(aPK_obj = 12)
                    print(person.export_as_vcard())

            #--------------------------------------------------------
            def test_mecard():
                    person = cPerson(aPK_obj = 12)
                    print(person.MECARD)
                    mcf = person.export_as_mecard()
                    print(mcf)
                    #print(gmTools.create_qrcode(filename = mcf, qr_filename = None, verbose = True)
                    #print(gmTools.create_qrcode(text = person.MECARD, qr_filename = None, verbose = True))

            #--------------------------------------------------------
            def test_current_patient():
                    pat = gmCurrentPatient()
                    print("pat.emr", pat.emr)

            #--------------------------------------------------------
            def test_assimilate_identity():
                    patient = cPatient(12)
                    set_active_patient(patient = patient)
                    curr_pat = gmCurrentPatient()
                    #other_pat = cPerson(1111111)
                    curr_pat.assimilate_identity(other_identity=None)

            #--------------------------------------------------------
            def test_get_person_duplicates():
                    print(get_person_duplicates (
                            lastnames = 'Kirk',
                            firstnames = 'James Tiberius',
                            dob = '1931-03-21',
                            gender = 'm',
                            comment = None
                    ))

            #--------------------------------------------------------
            def test_get_potential_person_dupes():
                    print('w/o first name:')
                    print(get_potential_person_dupes (
                            lastnames = 'Kirk',
                            #firstnames = 'James Tiberius',
                            dob = '1931-03-21',
                            active_only =True
                    ))
                    print('w/ first name:')
                    print(get_potential_person_dupes (
                            lastnames = 'Kirk',
                            firstnames = 'James Tiberius',
                            dob = '1931-03-21',
                            active_only =True
                    ))
                    print('w/ first name:')
                    print(get_potential_person_dupes (
                            lastnames = 'Kirk',
                            firstnames = ' Tiber',
                            dob = '1931-03-21',
                            active_only =True
                    ))

            #--------------------------------------------------------
            #test_dto_person()
            #test_identity()
            #test_set_active_pat()
            #test_search_by_dto()
            #test_name()
            #test_gender_list()

            #map_gender2salutation('m')
            # module functions

            #comms = get_comm_list()
            #print("\n\nRetrieving communication media enum (id, description): %s" % comms)
            #test_export_area()
            #test_ext_id()
            #test_vcf()

            gmPG2.request_login_params(setup_pool = True)
            test_mecard()
            #test_ext_id()
            #test_current_patient()
            #test_assimilate_identity()
            #test_get_person_duplicates()
            #test_get_potential_person_dupes()

    #============================================================

## Functions

`def create_dummy_identity()`
  Expand source code

      def create_dummy_identity():
              cmd = "INSERT INTO dem.identity(gender) VALUES (NULL::text) RETURNING pk"
              rows, idx = gmPG2.run_rw_queries (
                      queries = [{'cmd': cmd}],
                      return_data = True
              )
              return gmDemographicRecord.cPerson(aPK_obj = rows[0][0])

`def create_identity(gender=None, dob=None, lastnames=None, firstnames=None, comment=None)`
  Expand source code

      def create_identity(gender=None, dob=None, lastnames=None, firstnames=None, comment=None):

              cmd1 = "INSERT INTO dem.identity (gender, dob, comment) VALUES (%s, %s, %s)"
              cmd2 = """
      INSERT INTO dem.names (
              id_identity, lastnames, firstnames
      ) VALUES (
              currval('dem.identity_pk_seq'), coalesce(%s, 'xxxDEFAULTxxx'), coalesce(%s, 'xxxDEFAULTxxx')
      ) RETURNING id_identity"""
      #       cmd2 = u"select dem.add_name(currval('dem.identity_pk_seq')::integer, coalesce(%s, 'xxxDEFAULTxxx'), coalesce(%s, 'xxxDEFAULTxxx'), True)"
              try:
                      rows, idx = gmPG2.run_rw_queries (
                              queries = [
                                      {'cmd': cmd1, 'args': [gender, dob, comment]},
                                      {'cmd': cmd2, 'args': [lastnames, firstnames]}
                                      #{'cmd': cmd2, 'args': [firstnames, lastnames]}
                              ],
                              return_data = True
                      )
              except Exception:
                      _log.exception('cannot create identity')
                      gmLog2.log_stack_trace()
                      return None
              ident = cPerson(aPK_obj = rows[0][0])
              gmHooks.run_hook_script(hook = 'post_person_creation')
              return ident

`def create_name(pk_person, firstnames, lastnames, active=False)`
  Expand source code

      def create_name(pk_person, firstnames, lastnames, active=False):
              queries = [{
                      'cmd': "select dem.add_name(%s, %s, %s, %s)",
                      'args': [pk_person, firstnames, lastnames, active]
              }]
              rows, idx = gmPG2.run_rw_queries(queries=queries, return_data=True)
              name = cPersonName(aPK_obj = rows[0][0])
              return name

`def disable_identity(pk_identity)`
  Expand source code

      def disable_identity(pk_identity):
              _log.info('disabling identity [%s]', pk_identity)
              cmd = "UPDATE dem.identity SET deleted = true WHERE pk = %(pk)s"
              args = {'pk': pk_identity}
              gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
              return True

`def external_id_exists(pk_issuer, value) ‑> int`

  Check whether an external ID exists for a given ID issuer.

  ## Args

  `pk_issuer`
    primary key of external ID issuer (say, the Department of Motor Vehicles, DMV)
  `value`
    value of external ID (say, the driver's license ID)

  ## Returns

  Count of stored external IDs for the given issuer.

  Expand source code

      def external_id_exists(pk_issuer, value) -> int:
              """Check whether an external ID exists for a given ID issuer.

              Args:
                      pk_issuer: primary key of external ID issuer (say, the Department of Motor Vehicles, DMV)
                      value: value of external ID (say, the driver's license ID)

              Returns:
                      Count of stored external IDs for the given issuer.
              """
              cmd = 'SELECT COUNT(1) FROM dem.lnk_identity2ext_id WHERE fk_origin = %(issuer)s AND external_id = %(val)s'
              args = {'issuer': pk_issuer, 'val': value}
              rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
              return rows[0][0]

`def get_gender_list()`

  Retrieves the list of known genders from the database.

  Expand source code

      def get_gender_list():
              """Retrieves the list of known genders from the database."""
              global __gender_idx
              global __gender_list

              if __gender_list is None:
                      cmd = "SELECT tag, l10n_tag, label, l10n_label, sort_weight FROM dem.v_gender_labels ORDER BY sort_weight DESC"
                      __gender_list, __gender_idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd}], get_col_idx = True)
                      _log.debug('genders in database: %s' % __gender_list)

              return (__gender_list, __gender_idx)

`def get_person_IDs()`
  Expand source code

      def get_person_IDs():
              cmd = 'SELECT pk FROM dem.identity'
              rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd}], get_col_idx = False)
              return [ r[0] for r in rows ]

`def get_person_duplicates(lastnames: str, firstnames: str, dob, gender: str, comment: str) ‑> list`

  Check whether a given person record exists in the database.

  ## Args

  `lastnames`
    last names to search form, case insensitive
  `firstnames`
    first names to search for, case insensitive
  `dob`
    date of birth to search for, truncated to days
  `gender`
    gender, case insensitive
  `comment`
    comment to search for, used for de-duplication, case insensitive

  ## Returns

  List of primary keys of persons matching the given criteria.

  Expand source code

      def get_person_duplicates(lastnames:str, firstnames:str, dob, gender:str, comment:str) -> list:
              """Check whether a given person record exists in the database.

              Args:
                      lastnames: last names to search form, case insensitive
                      firstnames: first names to search for, case insensitive
                      dob: date of birth to search for, truncated to days
                      gender: gender, case insensitive
                      comment: comment to search for, used for de-duplication, case insensitive

              Returns:
                      List of primary keys of persons matching the given criteria.
              """
              args = {
                      'last': lastnames.strip(),
                      'first': firstnames.strip(),
                      'dob': dob,
                      'gender': gmTools.none_if (
                              value = gender,
                              none_equivalent = '',
                              strip_string = True
                      ),
                      'cmt': gmTools.none_if (
                              value = comment,
                              none_equivalent = '',
                              strip_string = True
                      )
              }
              cmd = 'SELECT dem.get_person_duplicates(%(dob)s, %(last)s, %(first)s, %(gender)s, %(cmt)s)'
              rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
              return rows[0][0]

`def get_person_from_xdt(filename=None, encoding=None, dob_format=None)`
  Expand source code

      def get_person_from_xdt(filename=None, encoding=None, dob_format=None):
              from Gnumed.business import gmXdtObjects
              return gmXdtObjects.read_person_from_xdt(filename=filename, encoding=encoding, dob_format=dob_format)

`def get_persons_from_pks(pks=None)`
  Expand source code

      def get_persons_from_pks(pks=None):
              return [ cPerson(aPK_obj = pk) for pk in pks ]

`def get_persons_from_pracsoft_file(filename=None, encoding='ascii')`
  Expand source code

      def get_persons_from_pracsoft_file(filename=None, encoding='ascii'):
              from Gnumed.business import gmPracSoftAU
              return gmPracSoftAU.read_persons_from_pracsoft_file(filename=filename, encoding=encoding)

`def get_potential_person_dupes(lastnames: str, dob, firstnames: str = None, active_only: bool = True) ‑> int`

  Get number of potential duplicates of a person.

  ## Args

  `lastnames`
    last name(s) to search for
  `dob`
    date of birth to seach for, timestamp truncated to days
  `firstnames`
    first name(s) to search for if given
  `active_only`
    search among all patients or among active patients only

  ## Returns

  Count of matches (= potential duplicates for the arguments).

  Expand source code

      def get_potential_person_dupes(lastnames:str, dob, firstnames:str=None, active_only:bool=True) -> int:
              """Get number of potential duplicates of a person.

              Args:
                      lastnames: last name(s) to search for
                      dob: date of birth to seach for, timestamp truncated to days
                      firstnames: first name(s) to search for if given
                      active_only: search among _all_ patients or among active patients only

              Returns:
                      Count of matches (= potential duplicates for the arguments).
              """
              assert (lastnames is not None), '<lastnames> required'
              assert (dob is not None), '<dob> required'
              args = {
                      'last': lastnames,
                      'dob': dob
              }
              where_parts = [
                      "lastnames = %(last)s",
                      "dem.date_trunc_utc('day', dob) = dem.date_trunc_utc('day', %(dob)s)"
              ]
              if firstnames is not None:
                      if firstnames.strip() != '':
                              where_parts.append("firstnames ~* %(first)s")
                              # the \m makes "firstnames" match at any word boundary
                              args['first'] = '\\m' + firstnames.strip()
              if active_only:
                      cmd = """SELECT COUNT(1) FROM dem.v_active_persons WHERE %s""" % ' AND '.join(where_parts)
              else:
                      cmd = """SELECT COUNT(1) FROM dem.v_all_persons WHERE %s""" % ' AND '.join(where_parts)
              rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
              return rows[0][0]

`def identity_exists(pk_identity)`
  Expand source code

      def identity_exists(pk_identity):
              cmd = 'SELECT EXISTS(SELECT 1 FROM dem.identity where pk = %(pk)s)'
              args = {'pk': pk_identity}
              rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
              return rows[0][0]

`def identity_is_patient(pk_identity)`
  Expand source code

      def identity_is_patient(pk_identity):
              cmd = 'SELECT 1 FROM clin.patient WHERE fk_identity = %(pk_pat)s'
              args = {'pk_pat': pk_identity}
              rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
              if len(rows) == 0:
                      return False
              return True

`def map_firstnames2gender(firstnames=None)`

  Try getting the gender for the given first name.

  Expand source code

      def map_firstnames2gender(firstnames=None):
              """Try getting the gender for the given first name."""

              if firstnames is None:
                      return None

              rows, idx = gmPG2.run_ro_queries(queries = [{
                      'cmd': "SELECT gender FROM dem.name_gender_map WHERE name ILIKE %(fn)s LIMIT 1",
                      'args': {'fn': firstnames}
              }])

              if len(rows) == 0:
                      return None

              return rows[0][0]

`def map_gender2salutation(gender=None)`

  Maps GNUmed related i18n-aware gender specifiers to a human-readable salutation.

  Expand source code

      def map_gender2salutation(gender=None):
              """Maps GNUmed related i18n-aware gender specifiers to a human-readable salutation."""

              global __gender2salutation_map

              if __gender2salutation_map is None:
                      genders, idx = get_gender_list()
                      __gender2salutation_map = {
                              'm': _('Mr'),
                              'f': _('Mrs'),
                              'tf': '',
                              'tm': '',
                              'h': '',
                              None: ''
                      }
                      for g in genders:
                              __gender2salutation_map[g[idx['l10n_tag']]] = __gender2salutation_map[g[idx['tag']]]
                              __gender2salutation_map[g[idx['label']]] = __gender2salutation_map[g[idx['tag']]]
                              __gender2salutation_map[g[idx['l10n_label']]] = __gender2salutation_map[g[idx['tag']]]
                      _log.debug('gender -> salutation mapping: %s' % __gender2salutation_map)

              return __gender2salutation_map[gender]

`def map_gender2string(gender=None)`

  Maps GNUmed related i18n-aware gender specifiers to a human-readable string.

  Expand source code

      def map_gender2string(gender=None):
              """Maps GNUmed related i18n-aware gender specifiers to a human-readable string."""

              global __gender2string_map

              if __gender2string_map is None:
                      genders, idx = get_gender_list()
                      __gender2string_map = {
                              'm': _('male'),
                              'f': _('female'),
                              'tf': '',
                              'tm': '',
                              'h': '',
                              None: _('unknown gender')
                      }
                      for g in genders:
                              __gender2string_map[g[idx['l10n_tag']]] = g[idx['l10n_label']]
                              __gender2string_map[g[idx['tag']]] = g[idx['l10n_label']]
                      _log.debug('gender -> string mapping: %s' % __gender2string_map)

              return __gender2string_map[gender]

`def set_active_patient(patient=None, forced_reload=False)`

  Set active patient.

  If patient is -1 the active patient will be UNset.

  Expand source code

      def set_active_patient(patient=None, forced_reload=False):
              """Set active patient.

              If patient is -1 the active patient will be UNset.
              """
              if isinstance(patient, gmCurrentPatient):
                      return True

              if isinstance(patient, cPatient):
                      pat = patient
              elif isinstance(patient, cPerson):
                      pat = pat.as_patient
              elif patient == -1:
                      pat = patient
              else:
                      # maybe integer ?
                      success, pk = gmTools.input2int(initial = patient, minval = 1)
                      if not success:
                              raise ValueError('<patient> must be either -1, >0, or a cPatient, cPerson or gmCurrentPatient instance, is: %s' % patient)
                      # but also valid patient ID ?
                      try:
                              pat = cPatient(aPK_obj = pk)
                      except Exception:
                              _log.exception('identity [%s] not found' % patient)
                              return False

              # attempt to switch
              try:
                      gmCurrentPatient(patient = pat, forced_reload = forced_reload)
              except Exception:
                      _log.exception('error changing active patient to [%s]' % patient)
                      return False

              return True

`def set_yielder(yielder)`
  Expand source code

      def set_yielder(yielder):
              if not callable(yielder):
                      raise TypeError('yielder <%s> is not callable' % yielder)
              global _yield
              _yield = yielder
              _log.debug('setting yielder to <%s>', yielder)

`def turn_identity_into_patient(pk_identity)`
  Expand source code

      def turn_identity_into_patient(pk_identity):
              cmd = """
                      INSERT INTO clin.patient (fk_identity)
                      SELECT %(pk_ident)s WHERE NOT EXISTS (
                              SELECT 1 FROM clin.patient c_p WHERE fk_identity = %(pk_ident)s
                      )"""
              args = {'pk_ident': pk_identity}
              queries = [{'cmd': cmd, 'args': args}]
              gmPG2.run_rw_queries(queries = queries)
              return True

## Classes

`class cDTO_person`
  Expand source code

      class cDTO_person(object):

              def __init__(self):
                      self.identity = None
                      self.external_ids = []
                      self.comm_channels = []
                      self.addresses = []

                      self.firstnames = None
                      self.lastnames = None
                      self.title = None
                      self.gender = None
                      self.dob = None
                      self.dob_is_estimated = False
                      self.source = self.__class__.__name__

                      self.dob_formats = None
                      self.dob_tz = None

              #--------------------------------------------------------
              # external API
              #--------------------------------------------------------
              def keys(self):
                      return 'firstnames lastnames dob gender title'.split()
              #--------------------------------------------------------
              def delete_from_source(self):
                      pass
              #--------------------------------------------------------
              def _is_unique(self):
                      where_snippets = [
                              'firstnames = %(first)s',
                              'lastnames = %(last)s'
                      ]
                      args = {
                              'first': self.firstnames,
                              'last': self.lastnames
                      }
                      if self.dob is not None:
                              where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)")
                              args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59)
                      if self.gender is not None:
                              where_snippets.append('gender = %(sex)s')
                              args['sex'] = self.gender
                      cmd = 'SELECT count(1) FROM dem.v_person_names WHERE %s' % ' AND '.join(where_snippets)
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)

                      return rows[0][0] == 1

              is_unique = property(_is_unique)

              #--------------------------------------------------------
              def _exists(self):
                      where_snippets = [
                              'firstnames = %(first)s',
                              'lastnames = %(last)s'
                      ]
                      args = {
                              'first': self.firstnames,
                              'last': self.lastnames
                      }
                      if self.dob is not None:
                              where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)")
                              args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59)
                      if self.gender is not None:
                              where_snippets.append('gender = %(sex)s')
                              args['sex'] = self.gender
                      cmd = 'SELECT count(1) FROM dem.v_person_names WHERE %s' % ' AND '.join(where_snippets)
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)

                      return rows[0][0] > 0

              exists = property(_exists)

              #--------------------------------------------------------
              def get_candidate_identities(self, can_create=False):
                      """Generate generic queries.

                      - not locale dependant
                      - data -> firstnames, lastnames, dob, gender

                      shall we mogrify name parts ? probably not as external
                      sources should know what they do

                      finds by inactive name, too, but then shows
                      the corresponding active name ;-)

                      Returns list of matching identities (may be empty)
                      or None if it was told to create an identity but couldn't.
                      """
                      where_snippets = []
                      args = {}

                      where_snippets.append('lower(firstnames) = lower(%(first)s)')
                      args['first'] = self.firstnames

                      where_snippets.append('lower(lastnames) = lower(%(last)s)')
                      args['last'] = self.lastnames

                      if self.dob is not None:
                              where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)")
                              args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59)

                      if self.gender is not None:
                              where_snippets.append('lower(gender) = lower(%(sex)s)')
                              args['sex'] = self.gender

                      # FIXME: allow disabled persons ?
                      cmd = """
                              SELECT *, '%s' AS match_type
                              FROM dem.v_active_persons
                              WHERE
                                      pk_identity IN (
                                              SELECT pk_identity FROM dem.v_person_names WHERE %s
                                      )
                              ORDER BY lastnames, firstnames, dob""" % (
                      _('external patient source (name, gender, date of birth)'),
                      ' AND '.join(where_snippets)
                      )

                      try:
                              rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx=True)
                      except Exception:
                              _log.error('cannot get candidate identities for dto "%s"' % self)
                              _log.exception('query %s' % cmd)
                              rows = []

                      if len(rows) == 0:
                              _log.debug('no candidate identity matches found')
                              if not can_create:
                                      return []
                              ident = self.import_into_database()
                              if ident is None:
                                      return None
                              identities = [ident]
                      else:
                              identities = [ cPerson(row = {'pk_field': 'pk_identity', 'data': row, 'idx': idx}) for row in rows ]

                      return identities
              #--------------------------------------------------------
              def import_into_database(self):
                      """Imports self into the database."""

                      self.identity = create_identity (
                              firstnames = self.firstnames,
                              lastnames = self.lastnames,
                              gender = self.gender,
                              dob = self.dob
                      )

                      if self.identity is None:
                              return None

                      self.identity['dob_is_estimated'] = self.dob_is_estimated is True
                      if self.title is not None:
                              self.identity['title'] = self.title
                      self.identity.save()

                      for ext_id in self.external_ids:
                              try:
                                      self.identity.add_external_id (
                                              type_name = ext_id['name'],
                                              value = ext_id['value'],
                                              issuer = ext_id['issuer'],
                                              comment = ext_id['comment']
                                      )
                              except Exception:
                                      _log.exception('cannot import <external ID> from external data source')
                                      gmLog2.log_stack_trace()

                      for comm in self.comm_channels:
                              try:
                                      self.identity.link_comm_channel (
                                              comm_medium = comm['channel'],
                                              url = comm['url']
                                      )
                              except Exception:
                                      _log.exception('cannot import <comm channel> from external data source')
                                      gmLog2.log_stack_trace()

                      for adr in self.addresses:
                              try:
                                      self.identity.link_address (
                                              adr_type = adr['type'],
                                              number = adr['number'],
                                              subunit = adr['subunit'],
                                              street = adr['street'],
                                              postcode = adr['zip'],
                                              urb = adr['urb'],
                                              region_code = adr['region_code'],
                                              country_code = adr['country_code']
                                      )
                              except Exception:
                                      _log.exception('cannot import <address> from external data source')
                                      gmLog2.log_stack_trace()

                      return self.identity
              #--------------------------------------------------------
              def import_extra_data(self, *args, **kwargs):
                      pass
              #--------------------------------------------------------
              def remember_external_id(self, name=None, value=None, issuer=None, comment=None):
                      value = value.strip()
                      if value == '':
                              return
                      name = name.strip()
                      if name == '':
                              raise ValueError(_('<name> cannot be empty'))
                      issuer = issuer.strip()
                      if issuer == '':
                              raise ValueError(_('<issuer> cannot be empty'))
                      self.external_ids.append({'name': name, 'value': value, 'issuer': issuer, 'comment': comment})
              #--------------------------------------------------------
              def remember_comm_channel(self, channel=None, url=None):
                      url = url.strip()
                      if url == '':
                              return
                      channel = channel.strip()
                      if channel == '':
                              raise ValueError(_('<channel> cannot be empty'))
                      self.comm_channels.append({'channel': channel, 'url': url})
              #--------------------------------------------------------
              def remember_address(self, number=None, street=None, urb=None, region_code=None, zip=None, country_code=None, adr_type=None, subunit=None):
                      number = number.strip()
                      if number == '':
                              raise ValueError(_('<number> cannot be empty'))
                      street = street.strip()
                      if street == '':
                              raise ValueError(_('<street> cannot be empty'))
                      urb = urb.strip()
                      if urb == '':
                              raise ValueError(_('<urb> cannot be empty'))
                      zip = zip.strip()
                      if zip == '':
                              raise ValueError(_('<zip> cannot be empty'))
                      country_code = country_code.strip()
                      if country_code == '':
                              raise ValueError(_('<country_code> cannot be empty'))
                      if region_code is not None:
                              region_code = region_code.strip()
                      if region_code in [None, '']:
                              region_code = '??'
                      self.addresses.append ({
                              'type': adr_type,
                              'number': number,
                              'subunit': subunit,
                              'street': street,
                              'zip': zip,
                              'urb': urb,
                              'region_code': region_code,
                              'country_code': country_code
                      })
              #--------------------------------------------------------
              # customizing behaviour
              #--------------------------------------------------------
              def __str__(self):
                      return '<%s (%s) @ %s: %s %s (%s) %s%s>' % (
                              self.__class__.__name__,
                              self.source,
                              id(self),
                              self.lastnames.upper(),
                              self.firstnames,
                              self.gender,
                              gmTools.bool2subst(self.dob_is_estimated, '~', '', ''),
                              self.dob
                      )
              #--------------------------------------------------------
              def __setattr__(self, attr, val):
                      """Do some sanity checks on self.* access."""

                      if attr == 'gender':
                              if val is None:
                                      object.__setattr__(self, attr, val)
                                      return
                              glist, idx = get_gender_list()
                              for gender in glist:
                                      if str(val) in [gender[0], gender[1], gender[2], gender[3]]:
                                              val = gender[idx['tag']]
                                              object.__setattr__(self, attr, val)
                                              return
                              raise ValueError('invalid gender: [%s]' % val)

                      if attr == 'dob':
                              if val is not None:
                                      if isinstance(val, str):
                                              dob = self.__parse_dob_str(val)
                                              if dob is None:
                                                      raise ValueError('cannot parse DOB [%s]' % val)
                                              val = dob
                                      if not isinstance(val, pyDT.datetime):
                                              raise TypeError('invalid type for DOB (must be datetime.datetime): %s [%s]' % (type(val), val))
                                      if val.tzinfo is None:
                                              raise ValueError('datetime.datetime instance is lacking a time zone: [%s]' % val.isoformat())

                      object.__setattr__(self, attr, val)
                      return
              #--------------------------------------------------------
              def __getitem__(self, attr):
                      return getattr(self, attr)
              #--------------------------------------------------------
              def __parse_dob_str(self, dob_str):
                      if self.dob_formats is None:
                              return None
                      for dob_format in self.dob_formats:
                              try:
                                      dob = pyDT.datetime.strptime(dob_str, dob_format)
                              except ValueError:
                                      _log.exception('cannot parse DOB [%s] with [%s]', dob_str, dob_format)
                                      continue
                              if self.dob_tz is None:
                                      raise ValueError('lacking TZ information in DOB [%s] and/or format [%s]' % (dob_str, self.dob_format))
                              dob = dob.replace(tzinfo = self.dob_tz)
                              return dob
                      return None

  ### Subclasses

  - cDTO_CCRdr
  - cDTO_KVK
  - cDTO_eGK
  - cDTO_xdt_person

  ### Instance variables

  `var exists`
    Expand source code

        def _exists(self):
                where_snippets = [
                        'firstnames = %(first)s',
                        'lastnames = %(last)s'
                ]
                args = {
                        'first': self.firstnames,
                        'last': self.lastnames
                }
                if self.dob is not None:
                        where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)")
                        args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59)
                if self.gender is not None:
                        where_snippets.append('gender = %(sex)s')
                        args['sex'] = self.gender
                cmd = 'SELECT count(1) FROM dem.v_person_names WHERE %s' % ' AND '.join(where_snippets)
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)

                return rows[0][0] > 0

  `var is_unique`
    Expand source code

        def _is_unique(self):
                where_snippets = [
                        'firstnames = %(first)s',
                        'lastnames = %(last)s'
                ]
                args = {
                        'first': self.firstnames,
                        'last': self.lastnames
                }
                if self.dob is not None:
                        where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)")
                        args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59)
                if self.gender is not None:
                        where_snippets.append('gender = %(sex)s')
                        args['sex'] = self.gender
                cmd = 'SELECT count(1) FROM dem.v_person_names WHERE %s' % ' AND '.join(where_snippets)
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)

                return rows[0][0] == 1

  ### Methods

  `def delete_from_source(self)`
    Expand source code

        def delete_from_source(self):
                pass

  `def get_candidate_identities(self, can_create=False)`

    Generate generic queries.

    - not locale dependant
    - data -> firstnames, lastnames, dob, gender

    shall we mogrify name parts ? probably not as external sources should know what they do

    finds by inactive name, too, but then shows the corresponding active name ;-)

    Returns list of matching identities (may be empty) or None if it was told to create an identity but couldn't.

    Expand source code

        def get_candidate_identities(self, can_create=False):
                """Generate generic queries.

                - not locale dependant
                - data -> firstnames, lastnames, dob, gender

                shall we mogrify name parts ? probably not as external
                sources should know what they do

                finds by inactive name, too, but then shows
                the corresponding active name ;-)

                Returns list of matching identities (may be empty)
                or None if it was told to create an identity but couldn't.
                """
                where_snippets = []
                args = {}

                where_snippets.append('lower(firstnames) = lower(%(first)s)')
                args['first'] = self.firstnames

                where_snippets.append('lower(lastnames) = lower(%(last)s)')
                args['last'] = self.lastnames

                if self.dob is not None:
                        where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)")
                        args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59)

                if self.gender is not None:
                        where_snippets.append('lower(gender) = lower(%(sex)s)')
                        args['sex'] = self.gender

                # FIXME: allow disabled persons ?
                cmd = """
                        SELECT *, '%s' AS match_type
                        FROM dem.v_active_persons
                        WHERE
                                pk_identity IN (
                                        SELECT pk_identity FROM dem.v_person_names WHERE %s
                                )
                        ORDER BY lastnames, firstnames, dob""" % (
                _('external patient source (name, gender, date of birth)'),
                ' AND '.join(where_snippets)
                )

                try:
                        rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx=True)
                except Exception:
                        _log.error('cannot get candidate identities for dto "%s"' % self)
                        _log.exception('query %s' % cmd)
                        rows = []

                if len(rows) == 0:
                        _log.debug('no candidate identity matches found')
                        if not can_create:
                                return []
                        ident = self.import_into_database()
                        if ident is None:
                                return None
                        identities = [ident]
                else:
                        identities = [ cPerson(row = {'pk_field': 'pk_identity', 'data': row, 'idx': idx}) for row in rows ]

                return identities

  `def import_extra_data(self, *args, **kwargs)`
    Expand source code

        def import_extra_data(self, *args, **kwargs):
                pass

  `def import_into_database(self)`

    Imports self into the database.

    Expand source code

        def import_into_database(self):
                """Imports self into the database."""

                self.identity = create_identity (
                        firstnames = self.firstnames,
                        lastnames = self.lastnames,
                        gender = self.gender,
                        dob = self.dob
                )

                if self.identity is None:
                        return None

                self.identity['dob_is_estimated'] = self.dob_is_estimated is True
                if self.title is not None:
                        self.identity['title'] = self.title
                self.identity.save()

                for ext_id in self.external_ids:
                        try:
                                self.identity.add_external_id (
                                        type_name = ext_id['name'],
                                        value = ext_id['value'],
                                        issuer = ext_id['issuer'],
                                        comment = ext_id['comment']
                                )
                        except Exception:
                                _log.exception('cannot import <external ID> from external data source')
                                gmLog2.log_stack_trace()

                for comm in self.comm_channels:
                        try:
                                self.identity.link_comm_channel (
                                        comm_medium = comm['channel'],
                                        url = comm['url']
                                )
                        except Exception:
                                _log.exception('cannot import <comm channel> from external data source')
                                gmLog2.log_stack_trace()

                for adr in self.addresses:
                        try:
                                self.identity.link_address (
                                        adr_type = adr['type'],
                                        number = adr['number'],
                                        subunit = adr['subunit'],
                                        street = adr['street'],
                                        postcode = adr['zip'],
                                        urb = adr['urb'],
                                        region_code = adr['region_code'],
                                        country_code = adr['country_code']
                                )
                        except Exception:
                                _log.exception('cannot import <address> from external data source')
                                gmLog2.log_stack_trace()

                return self.identity

  `def keys(self)`
    Expand source code

        def keys(self):
                return 'firstnames lastnames dob gender title'.split()

  `def remember_address(self, number=None, street=None, urb=None, region_code=None, zip=None, country_code=None, adr_type=None, subunit=None)`
    Expand source code

        def remember_address(self, number=None, street=None, urb=None, region_code=None, zip=None, country_code=None, adr_type=None, subunit=None):
                number = number.strip()
                if number == '':
                        raise ValueError(_('<number> cannot be empty'))
                street = street.strip()
                if street == '':
                        raise ValueError(_('<street> cannot be empty'))
                urb = urb.strip()
                if urb == '':
                        raise ValueError(_('<urb> cannot be empty'))
                zip = zip.strip()
                if zip == '':
                        raise ValueError(_('<zip> cannot be empty'))
                country_code = country_code.strip()
                if country_code == '':
                        raise ValueError(_('<country_code> cannot be empty'))
                if region_code is not None:
                        region_code = region_code.strip()
                if region_code in [None, '']:
                        region_code = '??'
                self.addresses.append ({
                        'type': adr_type,
                        'number': number,
                        'subunit': subunit,
                        'street': street,
                        'zip': zip,
                        'urb': urb,
                        'region_code': region_code,
                        'country_code': country_code
                })

  `def remember_comm_channel(self, channel=None, url=None)`
    Expand source code

        def remember_comm_channel(self, channel=None, url=None):
                url = url.strip()
                if url == '':
                        return
                channel = channel.strip()
                if channel == '':
                        raise ValueError(_('<channel> cannot be empty'))
                self.comm_channels.append({'channel': channel, 'url': url})

  `def remember_external_id(self, name=None, value=None, issuer=None, comment=None)`
    Expand source code

        def remember_external_id(self, name=None, value=None, issuer=None, comment=None):
                value = value.strip()
                if value == '':
                        return
                name = name.strip()
                if name == '':
                        raise ValueError(_('<name> cannot be empty'))
                issuer = issuer.strip()
                if issuer == '':
                        raise ValueError(_('<issuer> cannot be empty'))
                self.external_ids.append({'name': name, 'value': value, 'issuer': issuer, 'comment': comment})

`class cMatchProvider_Provider`

  Match provider which searches matches in possibly several database tables.

  queries: - a list of unicode strings - each string is a query - each string must contain: "… WHERE %(fragment_condition)s …" - each string can contain in the where clause: "… %()s …" - each query must return (data, list_label, field_label)

  context definitions to be used in the queries, example: {'ctxt_key1': {'where_part': 'AND country = %(country)s', 'placeholder': 'country'}}

  client code using .set_context() must use the 'placeholder': /.set_context('country', 'Germany')

  full example query:

          query = u" " "
                  SELECT DISTINCT ON (list_label)
                          pk_encounter
                                  AS data,
                          to_char(started, 'YYYY Mon DD (HH24:MI)') || ': ' || l10n_type || ' [#' || pk_encounter || ']'
                                  AS list_label,
                          to_char(started, 'YYYY Mon DD') || ': ' || l10n_type
                                  AS field_label
                  FROM
                          clin.v_pat_encounters
                  WHERE
                          (
                                  l10n_type %(fragment_condition)s
                                          OR
                                  type %(fragment_condition)s
                          )       %(ctxt_patient)s
                  ORDER BY
                          list_label
                  LIMIT
                          30
          " " "
          context = {'ctxt_patient': {
                  'where_part': u'AND pk_patient = %(PLACEHOLDER)s',
                  'placeholder': u'PLACEHOLDER'
          }}
          self.mp = gmMatchProvider.cMatchProvider_SQL2(queries = query, context = context)
          self.set_context(context = 'PLACEHOLDER', val = '<THE VALUE>')

  _SQL_data2match: SQL to retrieve a match by, say, primary key wherein the only keyword argument is 'pk'

  Expand source code

      class cMatchProvider_Provider(gmMatchProvider.cMatchProvider_SQL2):
              def __init__(self):
                      gmMatchProvider.cMatchProvider_SQL2.__init__(
                              self,
                              queries = [
                                      """SELECT
                                                      pk_staff AS data,
                                                      short_alias || ' (' || coalesce(title, '') || ' ' || firstnames || ' ' || lastnames || ')' AS list_label,
                                                      short_alias || ' (' || coalesce(title, '') || ' ' || firstnames || ' ' || lastnames || ')' AS field_label
                                              FROM dem.v_staff
                                              WHERE
                                                      is_active AND (
                                                              short_alias %(fragment_condition)s OR
                                                              firstnames %(fragment_condition)s OR
                                                              lastnames %(fragment_condition)s OR
                                                              db_user %(fragment_condition)s
                                                      )
                                      """
                              ]
                      )
                      self.setThresholds(1, 2, 3)

  ### Ancestors

  - cMatchProvider_SQL2
  - cMatchProvider

  ### Inherited members

  - `cMatchProvider_SQL2`:
    - `getAllMatches`
    - `getMatches`
    - `getMatchesByPhrase`
    - `getMatchesBySubstr`
    - `getMatchesByWord`
    - `setThresholds`
    - `set_context`
`class cPatient (aPK_obj=None, row=None)`

  Represents a person which is a patient.

  - a specializing subclass of cPerson turning it into a patient
  - its use is to cache subobjects like EMR and document folder

  Init business object.

  Call from child classes like so:

          super().__init__(aPK_obj = aPK_obj, row = row, link_obj = link_obj)

  ## Args

  `aPK_obj`
    retrieve data from backend * a simple value the primary key WHERE condition must be a simple column * a dictionary of values the primary key WHERE condition must be a subselect consuming the dict and producing the single-value primary key
  `row`
    must hold the fields * idx: a dict mapping field names to position * data: the field values in a list (as returned by cursor.fetchone() in the DB-API) * pk_field: the name of the primary key field OR * pk_obj: a dictionary suitable for passed to cursor.execute and holding the primary key values, used for composite PKs

  ## Examples

  row = { 'data': rows[0], 'idx': idx, 'pk_field': 'pk_XXX (the PK column name)', 'pk_obj': {'pk_col1': pk_col1_val, 'pk_col2': pk_col2_val} } rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True) objects = [ cChildClass(row = {'data': r, 'idx': idx, 'pk_field': 'the PK column name'}) for r in rows ]

  Expand source code

      class cPatient(cPerson):
              """Represents a person which is a patient.

              - a specializing subclass of cPerson turning it into a patient
              - its use is to cache subobjects like EMR and document folder
              """
              def __init__(self, aPK_obj=None, row=None):
                      cPerson.__init__(self, aPK_obj = aPK_obj, row = row)
                      self.__emr_access_lock = threading.Lock()
                      self.__emr = None
                      self.__doc_folder = None

              #--------------------------------------------------------
              def cleanup(self):
                      """Do cleanups before dying.

                      - note that this may be called in a thread
                      """
                      if self.__emr is not None:
                              self.__emr.cleanup()
                      if self.__doc_folder is not None:
                              self.__doc_folder.cleanup()
                      cPerson.cleanup(self)

              #----------------------------------------------------------------
              def ensure_has_allergy_state(self, pk_encounter=None):
                      from Gnumed.business.gmAllergy import ensure_has_allergy_state
                      ensure_has_allergy_state(encounter = pk_encounter)
                      return True

              #----------------------------------------------------------
              def get_emr(self):
                      _log.debug('accessing EMR for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())

                      # fast path: already set, just return it
                      if self.__emr is not None:
                              return self.__emr

                      stack_logged = False
                      got_lock = self.__emr_access_lock.acquire(False)
                      if not got_lock:
                              # do some logging as we failed to get the lock
                              call_stack = inspect.stack()
                              call_stack.reverse()
                              for idx in range(1, len(call_stack)):
                                      caller = call_stack[idx]
                                      _log.debug('%s[%s] @ [%s] in [%s]', ' '* idx, caller[3], caller[2], caller[1])
                              del call_stack
                              stack_logged = True
                              # now loop a bit
                              for idx in range(500):
                                      _yield()
                                      time.sleep(0.1)
                                      _yield()
                                      got_lock = self.__emr_access_lock.acquire(False)
                                      if got_lock:
                                              break
                              if not got_lock:
                                      _log.error('still failed to acquire EMR access lock, aborting (thread [%s])', threading.get_ident())
                                      self.__emr_access_lock.release()
                                      raise AttributeError('cannot lock access to EMR for identity [%s]' % self._payload[self._idx['pk_identity']])

                      _log.debug('pulling chart for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())
                      if not stack_logged:
                              # do some logging as we are pulling the chart for the first time
                              call_stack = inspect.stack()
                              call_stack.reverse()
                              for idx in range(1, len(call_stack)):
                                      caller = call_stack[idx]
                                      _log.debug('%s[%s] @ [%s] in [%s]', ' '* idx, caller[3], caller[2], caller[1])
                              del call_stack
                              stack_logged = True

                      self.is_patient = True
                      from Gnumed.business import gmClinicalRecord
                      emr = gmClinicalRecord.cClinicalRecord(aPKey = self._payload[self._idx['pk_identity']])

                      _log.debug('returning EMR for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())
                      self.__emr = emr
                      self.__emr_access_lock.release()
                      return self.__emr

              emr = property(get_emr, lambda x:x)

              #----------------------------------------------------------
              def get_document_folder(self):
                      if self.__doc_folder is None:
                              self.__doc_folder = cDocumentFolder(aPKey = self._payload[self._idx['pk_identity']])
                      return self.__doc_folder

              document_folder = property(get_document_folder, lambda x:x)

  ### Ancestors

  - cPerson
  - cBusinessDBObject

  ### Instance variables

  `var document_folder`
    Expand source code

        def get_document_folder(self):
                if self.__doc_folder is None:
                        self.__doc_folder = cDocumentFolder(aPKey = self._payload[self._idx['pk_identity']])
                return self.__doc_folder

  `var emr`
    Expand source code

        def get_emr(self):
                _log.debug('accessing EMR for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())

                # fast path: already set, just return it
                if self.__emr is not None:
                        return self.__emr

                stack_logged = False
                got_lock = self.__emr_access_lock.acquire(False)
                if not got_lock:
                        # do some logging as we failed to get the lock
                        call_stack = inspect.stack()
                        call_stack.reverse()
                        for idx in range(1, len(call_stack)):
                                caller = call_stack[idx]
                                _log.debug('%s[%s] @ [%s] in [%s]', ' '* idx, caller[3], caller[2], caller[1])
                        del call_stack
                        stack_logged = True
                        # now loop a bit
                        for idx in range(500):
                                _yield()
                                time.sleep(0.1)
                                _yield()
                                got_lock = self.__emr_access_lock.acquire(False)
                                if got_lock:
                                        break
                        if not got_lock:
                                _log.error('still failed to acquire EMR access lock, aborting (thread [%s])', threading.get_ident())
                                self.__emr_access_lock.release()
                                raise AttributeError('cannot lock access to EMR for identity [%s]' % self._payload[self._idx['pk_identity']])

                _log.debug('pulling chart for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())
                if not stack_logged:
                        # do some logging as we are pulling the chart for the first time
                        call_stack = inspect.stack()
                        call_stack.reverse()
                        for idx in range(1, len(call_stack)):
                                caller = call_stack[idx]
                                _log.debug('%s[%s] @ [%s] in [%s]', ' '* idx, caller[3], caller[2], caller[1])
                        del call_stack
                        stack_logged = True

                self.is_patient = True
                from Gnumed.business import gmClinicalRecord
                emr = gmClinicalRecord.cClinicalRecord(aPKey = self._payload[self._idx['pk_identity']])

                _log.debug('returning EMR for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())
                self.__emr = emr
                self.__emr_access_lock.release()
                return self.__emr

  ### Methods

  `def cleanup(self)`

    Do cleanups before dying.

    - note that this may be called in a thread
    Expand source code

        def cleanup(self):
                """Do cleanups before dying.

                - note that this may be called in a thread
                """
                if self.__emr is not None:
                        self.__emr.cleanup()
                if self.__doc_folder is not None:
                        self.__doc_folder.cleanup()
                cPerson.cleanup(self)

  `def ensure_has_allergy_state(self, pk_encounter=None)`
    Expand source code

        def ensure_has_allergy_state(self, pk_encounter=None):
                from Gnumed.business.gmAllergy import ensure_has_allergy_state
                ensure_has_allergy_state(encounter = pk_encounter)
                return True

  `def get_document_folder(self)`
    Expand source code

        def get_document_folder(self):
                if self.__doc_folder is None:
                        self.__doc_folder = cDocumentFolder(aPKey = self._payload[self._idx['pk_identity']])
                return self.__doc_folder

  `def get_emr(self)`
    Expand source code

        def get_emr(self):
                _log.debug('accessing EMR for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())

                # fast path: already set, just return it
                if self.__emr is not None:
                        return self.__emr

                stack_logged = False
                got_lock = self.__emr_access_lock.acquire(False)
                if not got_lock:
                        # do some logging as we failed to get the lock
                        call_stack = inspect.stack()
                        call_stack.reverse()
                        for idx in range(1, len(call_stack)):
                                caller = call_stack[idx]
                                _log.debug('%s[%s] @ [%s] in [%s]', ' '* idx, caller[3], caller[2], caller[1])
                        del call_stack
                        stack_logged = True
                        # now loop a bit
                        for idx in range(500):
                                _yield()
                                time.sleep(0.1)
                                _yield()
                                got_lock = self.__emr_access_lock.acquire(False)
                                if got_lock:
                                        break
                        if not got_lock:
                                _log.error('still failed to acquire EMR access lock, aborting (thread [%s])', threading.get_ident())
                                self.__emr_access_lock.release()
                                raise AttributeError('cannot lock access to EMR for identity [%s]' % self._payload[self._idx['pk_identity']])

                _log.debug('pulling chart for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())
                if not stack_logged:
                        # do some logging as we are pulling the chart for the first time
                        call_stack = inspect.stack()
                        call_stack.reverse()
                        for idx in range(1, len(call_stack)):
                                caller = call_stack[idx]
                                _log.debug('%s[%s] @ [%s] in [%s]', ' '* idx, caller[3], caller[2], caller[1])
                        del call_stack
                        stack_logged = True

                self.is_patient = True
                from Gnumed.business import gmClinicalRecord
                emr = gmClinicalRecord.cClinicalRecord(aPKey = self._payload[self._idx['pk_identity']])

                _log.debug('returning EMR for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())
                self.__emr = emr
                self.__emr_access_lock.release()
                return self.__emr

  ### Inherited members

  - `cPerson`:
    - `MECARD`
    - `add_external_id`
    - `add_name`
    - `assimilate_identity`
    - `fields_as_dict`
    - `format`
    - `get_fields`
    - `get_patient`
    - `get_subdir_name`
    - `get_updatable_fields`
    - `is_modified`
    - `link_address`
    - `link_comm_channel`
    - `link_occupation`
    - `patient_pk`
    - `refetch_payload`
    - `same_payload`
    - `save`
    - `save_payload`
    - `set_nickname`
    - `staff_id`
    - `subdir_name`
    - `suggest_external_ids`
    - `unlink_address`
    - `update_external_id`
`class cPerson (aPK_obj=None, row: dict = None, link_obj=None)`

  Represents business objects in the database.

  ## Rules

  - instances ARE ASSUMED TO EXIST in the database
  - PK construction (aPK_obj): DOES verify its existence on instantiation (fetching data fails)
  - Row construction (row): allowed by using a dict of pairs of field name: field value (PERFORMANCE improvement)
  - does NOT verify FK target existence
  - does NOT create new entries in the database
  - does NOT lazy-fetch fields on access

  Class scope SQL commands and variables: _cmd_fetch_payload: * must return exactly one row * WHERE clause argument values are expected in self.pk_obj (taken from init(aPK_obj)) * must return xmin of all rows that _cmds_store_payload will be updating, so views must support the xmin columns of their underlying tables

  cmds_store_payload: * one or multiple "update … set … where xmin = … and pk = …" statements which actually update the database from the data in self.payload, * the last query must refetch at least the XMIN values needed to detect concurrent updates, their field names had better be the same as in _cmd_fetch_payload, * the last query CAN return other fields which is particularly useful when those other fields are computed in the backend and may thus change upon save but will not have been set by the client code explicitely - this is only really of concern if the saved subclass is to be reused after saving rather than re-instantiated * when subclasses tend to live a while after save_payload() was called and they support computed fields (say, (some_column) you need to return all columns (see cEncounter)

  _updatable_fields: * a list of fields available for update via object['field']

  Init business object.

  Call from child classes like so:

          super().__init__(aPK_obj = aPK_obj, row = row, link_obj = link_obj)

  ## Args

  `aPK_obj`
    retrieve data from backend * a simple value the primary key WHERE condition must be a simple column * a dictionary of values the primary key WHERE condition must be a subselect consuming the dict and producing the single-value primary key
  `row`
    must hold the fields * idx: a dict mapping field names to position * data: the field values in a list (as returned by cursor.fetchone() in the DB-API) * pk_field: the name of the primary key field OR * pk_obj: a dictionary suitable for passed to cursor.execute and holding the primary key values, used for composite PKs

  ## Examples

  row = { 'data': rows[0], 'idx': idx, 'pk_field': 'pk_XXX (the PK column name)', 'pk_obj': {'pk_col1': pk_col1_val, 'pk_col2': pk_col2_val} } rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True) objects = [ cChildClass(row = {'data': r, 'idx': idx, 'pk_field': 'the PK column name'}) for r in rows ]

  Expand source code

      class cPerson(gmBusinessDBObject.cBusinessDBObject):
              _cmd_fetch_payload = _SQL_get_any_person
              _cmds_store_payload = [
                      """UPDATE dem.identity SET
                                      gender = %(gender)s,
                                      dob = %(dob)s,
                                      dob_is_estimated = %(dob_is_estimated)s,
                                      tob = %(tob)s,
                                      title = gm.nullify_empty_string(%(title)s),
                                      fk_marital_status = %(pk_marital_status)s,
                                      deceased = %(deceased)s,
                                      emergency_contact = gm.nullify_empty_string(%(emergency_contact)s),
                                      fk_emergency_contact = %(pk_emergency_contact)s,
                                      fk_primary_provider = %(pk_primary_provider)s,
                                      comment = gm.nullify_empty_string(%(comment)s)
                              WHERE
                                      pk = %(pk_identity)s and
                                      xmin = %(xmin_identity)s
                              RETURNING
                                      xmin AS xmin_identity"""
              ]
              _updatable_fields = [
                      "title",
                      "dob",
                      "tob",
                      "gender",
                      "pk_marital_status",
                      'deceased',
                      'emergency_contact',
                      'pk_emergency_contact',
                      'pk_primary_provider',
                      'comment',
                      'dob_is_estimated'
              ]
              #--------------------------------------------------------
              def _get_ID(self):
                      return self._payload[self._idx['pk_identity']]
              def _set_ID(self, value):
                      raise AttributeError('setting ID of identity is not allowed')

              ID = property(_get_ID, _set_ID)

              #--------------------------------------------------------
              def __setitem__(self, attribute, value):

                      if attribute == 'dob':
                              if value is not None:

                                      if isinstance(value, pyDT.datetime):
                                              if value.tzinfo is None:
                                                      raise ValueError('datetime.datetime instance is lacking a time zone: [%s]' % value.isoformat())
                                      else:
                                              raise TypeError('[%s]: type [%s] (%s) invalid for attribute [dob], must be datetime.datetime or None' % (self.__class__.__name__, type(value), value))

                                      # compare DOB at seconds level
                                      if self._payload[self._idx['dob']] is not None:
                                              old_dob = gmDateTime.pydt_strftime (
                                                      self._payload[self._idx['dob']],
                                                      format = '%Y %m %d %H %M %S',
                                                      accuracy = gmDateTime.acc_seconds
                                              )
                                              new_dob = gmDateTime.pydt_strftime (
                                                      value,
                                                      format = '%Y %m %d %H %M %S',
                                                      accuracy = gmDateTime.acc_seconds
                                              )
                                              if new_dob == old_dob:
                                                      return

                      gmBusinessDBObject.cBusinessDBObject.__setitem__(self, attribute, value)

              #--------------------------------------------------------
              def cleanup(self):
                      pass

              #--------------------------------------------------------
              def _get_is_patient(self):
                      return identity_is_patient(self._payload[self._idx['pk_identity']])

              def _set_is_patient(self, turn_into_patient):
                      if turn_into_patient:
                              return turn_identity_into_patient(self._payload[self._idx['pk_identity']])
                      return False

              is_patient = property(_get_is_patient, _set_is_patient)

              #--------------------------------------------------------
              def _get_as_patient(self):
                      return cPatient(self._payload[self._idx['pk_identity']])

              as_patient = property(_get_as_patient, lambda x:x)

              #--------------------------------------------------------
              def _get_staff_id(self):
                      cmd = "SELECT pk FROM dem.staff WHERE fk_identity = %(pk)s"
                      args = {'pk': self._payload[self._idx['pk_identity']]}
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
                      if len(rows) == 0:
                              return None
                      return rows[0][0]

              staff_id = property(_get_staff_id, lambda x:x)

              #--------------------------------------------------------
              # identity API
              #--------------------------------------------------------
              def _get_gender_symbol(self):
                      return map_gender2symbol[self._payload[self._idx['gender']]]

              gender_symbol = property(_get_gender_symbol, lambda x:x)
              #--------------------------------------------------------
              def _get_gender_string(self):
                      return map_gender2string(gender = self._payload[self._idx['gender']])

              gender_string = property(_get_gender_string, lambda x:x)
              #--------------------------------------------------------
              def _get_gender_list(self):
                      gender_list, tmp = get_gender_list()
                      return gender_list

              gender_list = property(_get_gender_list, lambda x:x)
              #--------------------------------------------------------
              def get_active_name(self):
                      names = self.get_names(active_only = True)
                      if len(names) == 0:
                              _log.error('cannot retrieve active name for patient [%s]', self._payload[self._idx['pk_identity']])
                              return None
                      return names[0]

              active_name = property(get_active_name, lambda x:x)
              #--------------------------------------------------------
              def get_names(self, active_only=False, exclude_active=False):

                      args = {'pk_pat': self._payload[self._idx['pk_identity']]}
                      where_parts = ['pk_identity = %(pk_pat)s']
                      if active_only:
                              where_parts.append('active_name is True')
                      if exclude_active:
                              where_parts.append('active_name is False')
                      cmd = """
                              SELECT *
                              FROM dem.v_person_names
                              WHERE %s
                              ORDER BY active_name DESC, lastnames, firstnames
                      """ % ' AND '.join(where_parts)
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)

                      if len(rows) == 0:
                              # no names registered for patient
                              return []

                      names = [ cPersonName(row = {'idx': idx, 'data': r, 'pk_field': 'pk_name'}) for r in rows ]
                      return names
              #--------------------------------------------------------
              def get_description_gender(self, with_nickname=True):
                      if with_nickname:
                              template = _('%(last)s,%(title)s %(first)s%(nick)s (%(sex)s)')
                      else:
                              template = _('%(last)s,%(title)s %(first)s (%(sex)s)')
                      return template % {
                              'last': self._payload[self._idx['lastnames']],
                              'title': gmTools.coalesce(self._payload[self._idx['title']], '', ' %s'),
                              'first': self._payload[self._idx['firstnames']],
                              'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'"),
                              'sex': self.gender_symbol
                      }

              #--------------------------------------------------------
              def get_description(self, with_nickname=True):
                      if with_nickname:
                              template = _('%(last)s,%(title)s %(first)s%(nick)s')
                      else:
                              template = _('%(last)s,%(title)s %(first)s')
                      return template % {
                              'last': self._payload[self._idx['lastnames']],
                              'title': gmTools.coalesce(self._payload[self._idx['title']], '', ' %s'),
                              'first': self._payload[self._idx['firstnames']],
                              'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'")
                      }

              #--------------------------------------------------------
              def add_name(self, firstnames, lastnames, active=True):
                      """Add a name.

                      @param firstnames The first names.
                      @param lastnames The last names.
                      @param active When True, the new name will become the active one (hence setting other names to inactive)
                      @type active A bool instance
                      """
                      name = create_name(self.ID, firstnames, lastnames, active)
                      if active:
                              self.refetch_payload()
                      return name

              #--------------------------------------------------------
              def delete_name(self, name=None):
                      cmd = "delete from dem.names where id = %(name)s and id_identity = %(pat)s"
                      args = {'name': name['pk_name'], 'pat': self.ID}
                      gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
                      # can't have been the active name as that would raise an
                      # exception (since no active name would be left) so no
                      # data refetch needed

              #--------------------------------------------------------
              def set_nickname(self, nickname=None):
                      """
                      Set the nickname. Setting the nickname only makes sense for the currently
                      active name.
                      @param nickname The preferred/nick/warrior name to set.
                      """
                      if self._payload[self._idx['preferred']] == nickname:
                              return True
                      rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': "SELECT dem.set_nickname(%s, %s)", 'args': [self.ID, nickname]}])
                      # setting nickname doesn't change dem.identity, so other fields
                      # of dem.v_active_persons do not get changed as a consequence of
                      # setting the nickname, hence locally setting nickname matches
                      # in-database reality
                      self._payload[self._idx['preferred']] = nickname
                      #self.refetch_payload()
                      return True

              #--------------------------------------------------------
              def get_tags(self, order_by=None):
                      if order_by is None:
                              order_by = ''
                      else:
                              order_by = 'ORDER BY %s' % order_by

                      cmd = gmDemographicRecord._SQL_get_person_tags % ('pk_identity = %%(pat)s %s' % order_by)
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': {'pat': self.ID}}], get_col_idx = True)

                      return [ gmDemographicRecord.cPersonTag(row = {'data': r, 'idx': idx, 'pk_field': 'pk_identity_tag'}) for r in rows ]

              tags = property(get_tags, lambda x:x)

              #--------------------------------------------------------
              def add_tag(self, tag):
                      args = {
                              'tag': tag,
                              'identity': self.ID
                      }

                      # already exists ?
                      cmd = "SELECT pk FROM dem.identity_tag WHERE fk_tag = %(tag)s AND fk_identity = %(identity)s"
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
                      if len(rows) > 0:
                              return gmDemographicRecord.cPersonTag(aPK_obj = rows[0]['pk'])

                      # no, add
                      cmd = """
                              INSERT INTO dem.identity_tag (
                                      fk_tag,
                                      fk_identity
                              ) VALUES (
                                      %(tag)s,
                                      %(identity)s
                              )
                              RETURNING pk
                      """
                      rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], return_data = True, get_col_idx = False)
                      return gmDemographicRecord.cPersonTag(aPK_obj = rows[0]['pk'])

              #--------------------------------------------------------
              def remove_tag(self, tag):
                      cmd = "DELETE FROM dem.identity_tag WHERE pk = %(pk)s"
                      gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': {'pk': tag}}])

              #--------------------------------------------------------
              # external ID API
              #
              # since external IDs are not treated as first class
              # citizens (classes in their own right, that is), we
              # handle them *entirely* within cPerson, also they
              # only make sense with one single person (like names)
              # and are not reused (like addresses), so they are
              # truly added/deleted, not just linked/unlinked
              #--------------------------------------------------------
              def add_external_id(self, type_name=None, value=None, issuer=None, comment=None, pk_type=None):
                      """Adds an external ID to the patient.

                      creates ID type if necessary
                      """
                      # check for existing ID
                      if pk_type is not None:
                              cmd = """
                                      select * from dem.v_external_ids4identity where
                                      pk_identity = %(pat)s and
                                      pk_type = %(pk_type)s and
                                      value = %(val)s"""
                      else:
                              # by type/value/issuer
                              if issuer is None:
                                      cmd = """
                                              select * from dem.v_external_ids4identity where
                                              pk_identity = %(pat)s and
                                              name = %(name)s and
                                              value = %(val)s"""
                              else:
                                      cmd = """
                                              select * from dem.v_external_ids4identity where
                                                      pk_identity = %(pat)s and
                                                      name = %(name)s and
                                                      value = %(val)s and
                                                      issuer = %(issuer)s"""
                      args = {
                              'pat': self.ID,
                              'name': type_name,
                              'val': value,
                              'issuer': issuer,
                              'pk_type': pk_type
                      }
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])

                      # create new ID if not found
                      if len(rows) == 0:

                              args = {
                                      'pat': self.ID,
                                      'val': value,
                                      'type_name': type_name,
                                      'pk_type': pk_type,
                                      'issuer': issuer,
                                      'comment': comment
                              }

                              if pk_type is None:
                                      cmd = """insert into dem.lnk_identity2ext_id (external_id, fk_origin, comment, id_identity) values (
                                              %(val)s,
                                              (select dem.add_external_id_type(%(type_name)s, %(issuer)s)),
                                              %(comment)s,
                                              %(pat)s
                                      )"""
                              else:
                                      cmd = """insert into dem.lnk_identity2ext_id (external_id, fk_origin, comment, id_identity) values (
                                              %(val)s,
                                              %(pk_type)s,
                                              %(comment)s,
                                              %(pat)s
                                      )"""

                              rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])

                      # or update comment of existing ID
                      else:
                              row = rows[0]
                              if comment is not None:
                                      # comment not already there ?
                                      if gmTools.coalesce(row['comment'], '').find(comment.strip()) == -1:
                                              comment = '%s%s' % (gmTools.coalesce(row['comment'], '', '%s // '), comment.strip)
                                              cmd = "update dem.lnk_identity2ext_id set comment = %(comment)s where id=%(pk)s"
                                              args = {'comment': comment, 'pk': row['pk_id']}
                                              rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])

              #--------------------------------------------------------
              def update_external_id(self, pk_id=None, type=None, value=None, issuer=None, comment=None):
                      """Edits an existing external ID.

                      Creates ID type if necessary.
                      """
                      cmd = """
                              UPDATE dem.lnk_identity2ext_id SET
                                      fk_origin = (SELECT dem.add_external_id_type(%(type)s, %(issuer)s)),
                                      external_id = %(value)s,
                                      comment = gm.nullify_empty_string(%(comment)s)
                              WHERE
                                      id = %(pk)s
                      """
                      args = {'pk': pk_id, 'value': value, 'type': type, 'issuer': issuer, 'comment': comment}
                      rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])

              #--------------------------------------------------------
              def get_external_ids(self, id_type=None, issuer=None):
                      where_parts = ['pk_identity = %(pat)s']
                      args = {'pat': self.ID}

                      if id_type is not None:
                              where_parts.append('name = %(name)s')
                              args['name'] = id_type.strip()

                      if issuer is not None:
                              where_parts.append('issuer = %(issuer)s')
                              args['issuer'] = issuer.strip()

                      cmd = "SELECT * FROM dem.v_external_ids4identity WHERE %s" % ' AND '.join(where_parts)
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])

                      return rows

              external_ids = property(get_external_ids, lambda x:x)

              #--------------------------------------------------------
              def delete_external_id(self, pk_ext_id=None):
                      cmd = """
                              DELETE FROM dem.lnk_identity2ext_id
                              WHERE id_identity = %(pat)s AND id = %(pk)s"""
                      args = {'pat': self.ID, 'pk': pk_ext_id}
                      gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])

              #--------------------------------------------------------
              def suggest_external_id(self, target=None):
                      dob = self.get_formatted_dob(format = '%Y%m%d', none_string = '?dob?')
                      gender = gmTools.coalesce(self['gender'], '?gender?')
                      pk = '#GMd::PK::%s#' % self.ID
                      name = self.active_name
                      last = ' '.join(p for p in name['lastnames'].split("-"))
                      last = ' '.join(p for p in last.split("."))
                      last = ' '.join(p for p in last.split("'"))
                      last = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in last.split(' '))
                      first = ' '.join(p for p in name['firstnames'].split("-"))
                      first = ' '.join(p for p in first.split("."))
                      first = ' '.join(p for p in first.split("'"))
                      first = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in first.split(' '))
                      suggestion_parts = ['GMd']
                      if target is not None:
                              suggestion_parts.append(target)
                      suggestion_parts.append(last)
                      suggestion_parts.append(first)
                      suggestion_parts.append(dob)
                      suggestion_parts.append(gender)
                      suggestion_parts.append(pk)
                      suggestion = '-'.join (suggestion_parts)
                      try:
                              import unidecode
                              suggestion = unidecode.unidecode(suggestion)
                      except ImportError:
                              _log.debug('cannot transliterate external ID suggestion, <unidecode> module not installed')
                      return suggestion

              external_id_suggestion = property(suggest_external_id, lambda x:x)

              #--------------------------------------------------------
              def suggest_external_ids(self, target=None):
                      """Suggest external IDs for this person."""
                      dob = self.get_formatted_dob(format = '%Y%m%d', none_string = '?dob?')
                      gender = gmTools.coalesce(self['gender'], '?gender?')
                      pk = '#GMd::PK::%s#' % self.ID
                      suggestions = []
                      for name in self.get_names(active_only = False, exclude_active = False):
                              last = ' '.join(part for part in name['lastnames'].split("-"))
                              last = ' '.join(part for part in last.split("."))
                              last = ' '.join(part for part in last.split("'"))
                              last = ''.join(gmTools.capitalize(text = part, mode = gmTools.CAPS_FIRST_ONLY) for part in last.split(' '))
                              first = ' '.join(part for part in name['firstnames'].split("-"))
                              first = ' '.join(part for part in first.split("."))
                              first = ' '.join(part for part in first.split("'"))
                              first = ''.join(gmTools.capitalize(text = part, mode = gmTools.CAPS_FIRST_ONLY) for part in first.split(' '))
                              suggestion_parts = ['GMd']
                              if target is not None:
                                      suggestion_parts.append(target)
                              suggestion_parts.append(last)
                              suggestion_parts.append(first)
                              suggestion_parts.append(dob)
                              suggestion_parts.append(gender)
                              suggestion_parts.append(pk)
                              suggestion = '-'.join(suggestion_parts)
                              try:
                                      import unidecode
                                      suggestion = unidecode.unidecode(suggestion)
                              except ImportError:
                                      _log.debug('cannot transliterate to ASCII external ID suggestion, <unidecode> module not installed')
                              suggestions.append(suggestion)
                      return suggestions

              #--------------------------------------------------------
              #--------------------------------------------------------
              def assimilate_identity(self, other_identity=None, link_obj=None):
                      """Merge another identity into this one.

                      Keep this one. Delete other one."""

                      if other_identity.ID == self.ID:
                              return True, None

                      curr_pat = gmCurrentPatient()
                      if curr_pat.connected:
                              if other_identity.ID == curr_pat.ID:
                                      return False, _('Cannot merge active patient into another patient.')

                      now_here = gmDateTime.pydt_strftime(gmDateTime.pydt_now_here())
                      distinguisher = _('merge of #%s into #%s @ %s') % (other_identity.ID, self.ID, now_here)

                      queries = []
                      args = {'pat2del': other_identity.ID, 'pat2keep': self.ID}

                      # merge allergy state
                      queries.append ({
                              'cmd': """
                                      UPDATE clin.allergy_state SET
                                              has_allergy = greatest (
                                                      (SELECT has_allergy FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s),
                                                      (SELECT has_allergy FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s)
                                              ),
                                              -- perhaps use least() to play it safe and make it appear longer ago than it might have been, actually ?
                                              last_confirmed = greatest (
                                                      (SELECT last_confirmed FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s),
                                                      (SELECT last_confirmed FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s)
                                              )
                                      WHERE
                                              pk = (SELECT pk_allergy_state FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s)
                              """,
                              'args': args
                      })
                      # delete old allergy state
                      queries.append ({
                              'cmd': 'DELETE FROM clin.allergy_state WHERE pk = (SELECT pk_allergy_state FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s)',
                              'args': args
                      })

                      # merge patient proxy
                      queries.append ({
                              'cmd': """
                                      UPDATE clin.patient SET
                                              edc = coalesce (
                                                      edc,
                                                      (SELECT edc FROM clin.patient WHERE fk_identity = %(pat2del)s)
                                              )
                                      WHERE
                                              fk_identity = %(pat2keep)s
                              """,
                              'args': args
                      })

                      # transfer names
                      # 1) hard-disambiguate all inactive names in old patient
                      #    (the active one will be disambiguated upon being moved)
                      queries.append ({
                              'cmd': """
                                      UPDATE dem.names d_n1 SET
                                              comment = coalesce (
                                                      comment, ''
                                              ) || coalesce (
                                                      ' (from identity: "' || (SELECT comment FROM dem.identity WHERE pk = %%(pat2del)s) || '")',
                                                      ''
                                              ) || ' (during: "%s")'
                                      WHERE
                                              d_n1.id_identity = %%(pat2del)s
                                      """ % distinguisher,
                              'args': args
                      })
                      # 2) move inactive ones (dupes are expected to have been eliminated in step 1 above)
                      queries.append ({
                              'cmd': u"""
                                      UPDATE dem.names d_n SET
                                              id_identity = %(pat2keep)s,
                                              lastnames = lastnames || ' [' || random()::TEXT || ']'
                                      WHERE
                                              d_n.id_identity = %(pat2del)s
                                                      AND
                                              d_n.active IS false
                                      """,
                              'args': args
                      })
                      # 3) copy active name into pat2keep as an inactive name,
                      #    because each identity MUST have at LEAST one name,
                      #    we can't simply UPDATE over to pat2keep
                      #    also, needs de-duplication or else it would conflict with
                      #    *itself* on pat2keep
                      queries.append ({
                              'cmd': """
                                      INSERT INTO dem.names (
                                              id_identity, active, firstnames, preferred, comment,
                                              lastnames
                                      )
                                              SELECT
                                                      %(pat2keep)s, false, firstnames, preferred, comment,
                                                      lastnames || ' [' || random()::text || ']'
                                              FROM dem.names d_n
                                              WHERE
                                                      d_n.id_identity = %(pat2del)s
                                                              AND
                                                      d_n.active IS true
                                      """,
                              'args': args
                      })

                      # disambiguate potential dupes
                      # - same-url comm channels
                      queries.append ({
                              'cmd': """
                                      UPDATE dem.lnk_identity2comm
                                      SET url = url || ' (%s)'
                                      WHERE
                                              fk_identity = %%(pat2del)s
                                                      AND
                                              EXISTS (
                                                      SELECT 1 FROM dem.lnk_identity2comm d_li2c
                                                      WHERE d_li2c.fk_identity = %%(pat2keep)s AND d_li2c.url = url
                                              )
                                      """ % distinguisher,
                              'args': args
                      })
                      # - same-value external IDs
                      queries.append ({
                              'cmd': """
                                      UPDATE dem.lnk_identity2ext_id
                                      SET external_id = external_id || ' (%s)'
                                      WHERE
                                              id_identity = %%(pat2del)s
                                                      AND
                                              EXISTS (
                                                      SELECT 1 FROM dem.lnk_identity2ext_id d_li2e
                                                      WHERE
                                                              d_li2e.id_identity = %%(pat2keep)s
                                                                      AND
                                                              d_li2e.external_id = external_id
                                                                      AND
                                                              d_li2e.fk_origin = fk_origin
                                              )
                                      """ % distinguisher,
                              'args': args
                      })
                      # - same addresses
                      queries.append ({
                              'cmd': """
                                      DELETE FROM dem.lnk_person_org_address
                                      WHERE
                                              id_identity = %(pat2del)s
                                                      AND
                                              id_address IN (
                                                      SELECT id_address FROM dem.lnk_person_org_address d_lpoa
                                                      WHERE d_lpoa.id_identity = %(pat2keep)s
                                              )
                              """,
                              'args': args
                      })

                      # find FKs pointing to dem.identity.pk
                      FKs = gmPG2.get_foreign_keys2column (
                              schema = 'dem',
                              table = 'identity',
                              column = 'pk'
                      )
                      # find FKs pointing to clin.patient.fk_identity
                      FKs.extend (gmPG2.get_foreign_keys2column (
                              schema = 'clin',
                              table = 'patient',
                              column = 'fk_identity'
                      ))

                      # generate UPDATEs
                      cmd_template = 'UPDATE %s SET %s = %%(pat2keep)s WHERE %s = %%(pat2del)s'
                      for FK in FKs:
                              if FK['referencing_table'] in ['dem.names', 'clin.patient']:
                                      continue
                              queries.append ({
                                      'cmd': cmd_template % (FK['referencing_table'], FK['referencing_column'], FK['referencing_column']),
                                      'args': args
                              })

                      # delete old patient proxy
                      queries.append ({
                              'cmd': 'DELETE FROM clin.patient WHERE fk_identity = %(pat2del)s',
                              'args': args
                      })

                      # remove old identity entry
                      queries.append ({
                              'cmd': 'delete from dem.identity where pk = %(pat2del)s',
                              'args': args
                      })

                      script_name = gmTools.get_unique_filename(prefix = 'gm-assimilate-%(pat2del)s-into-%(pat2keep)s-' % args, suffix = '.sql')
                      _log.warning('identity [%s] is about to assimilate identity [%s], SQL script [%s]', self.ID, other_identity.ID, script_name)

                      script = open(script_name, 'wt')
                      args['date'] = gmDateTime.pydt_strftime(gmDateTime.pydt_now_here(), '%Y %B %d  %H:%M')
                      script.write(_MERGE_SCRIPT_HEADER % args)
                      for query in queries:
                              script.write(query['cmd'] % args)
                              script.write(';\n')
                      script.write('\nROLLBACK;\n')
                      script.write('--COMMIT;\n')
                      script.close()

                      try:
                              gmPG2.run_rw_queries(link_obj = link_obj, queries = queries, end_tx = True)
                      except Exception:
                              return False, _('The merge failed. Check the log and [%s]') % script_name

                      self.add_external_id (
                              type_name = 'merged GNUmed identity primary key',
                              value = 'GNUmed::pk::%s' % other_identity.ID,
                              issuer = 'GNUmed'
                      )

                      return True, None

              #--------------------------------------------------------
              #--------------------------------------------------------
              def put_on_waiting_list(self, urgency=0, comment=None, zone=None):
                      cmd = """
                              insert into clin.waiting_list (fk_patient, urgency, comment, area, list_position)
                              values (
                                      %(pat)s,
                                      %(urg)s,
                                      %(cmt)s,
                                      %(area)s,
                                      (select coalesce((max(list_position) + 1), 1) from clin.waiting_list)
                              )"""
                      args = {'pat': self.ID, 'urg': urgency, 'cmt': comment, 'area': zone}
                      gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], verbose = True)
                      gmHooks.run_hook_script(hook = 'after_waiting_list_modified')

              #--------------------------------------------------------
              def get_waiting_list_entry(self):
                      cmd = """SELECT * FROM clin.v_waiting_list WHERE pk_identity = %(pat)s"""
                      args = {'pat': self.ID}
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
                      return rows

              waiting_list_entries = property(get_waiting_list_entry, lambda x:x)

              #--------------------------------------------------------
              def _get_export_area(self):
                      return gmExportArea.cExportArea(self.ID)

              export_area = property(_get_export_area, lambda x:x)
              #--------------------------------------------------------
              def export_as_gdt(self, filename=None, encoding='iso-8859-15', external_id_type=None):

                      template = '%s%s%s\r\n'

                      if filename is None:
                              filename = gmTools.get_unique_filename (
                                      prefix = 'gm-patient-',
                                      suffix = '.gdt'
                              )

                      gdt_file = open(filename, mode = 'wt', encoding = encoding, errors = 'strict')

                      gdt_file.write(template % ('013', '8000', '6301'))
                      gdt_file.write(template % ('013', '9218', '2.10'))
                      if external_id_type is None:
                              gdt_file.write(template % ('%03d' % (9 + len(str(self.ID))), '3000', self.ID))
                      else:
                              ext_ids = self.get_external_ids(id_type = external_id_type)
                              if len(ext_ids) > 0:
                                      gdt_file.write(template % ('%03d' % (9 + len(ext_ids[0]['value'])), '3000', ext_ids[0]['value']))
                      gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['lastnames']])), '3101', self._payload[self._idx['lastnames']]))
                      gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['firstnames']])), '3102', self._payload[self._idx['firstnames']]))
                      gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['dob']].strftime('%d%m%Y'))), '3103', self._payload[self._idx['dob']].strftime('%d%m%Y')))
                      gdt_file.write(template % ('010', '3110', gmXdtMappings.map_gender_gm2xdt[self._payload[self._idx['gender']]]))
                      gdt_file.write(template % ('025', '6330', 'GNUmed::9206::encoding'))
                      gdt_file.write(template % ('%03d' % (9 + len(encoding)), '6331', encoding))
                      if external_id_type is None:
                              gdt_file.write(template % ('029', '6332', 'GNUmed::3000::source'))
                              gdt_file.write(template % ('017', '6333', 'internal'))
                      else:
                              if len(ext_ids) > 0:
                                      gdt_file.write(template % ('029', '6332', 'GNUmed::3000::source'))
                                      gdt_file.write(template % ('%03d' % (9 + len(external_id_type)), '6333', external_id_type))

                      gdt_file.close()

                      return filename
              #--------------------------------------------------------
              def export_as_xml_linuxmednews(self, filename=None):

                      if filename is None:
                              filename = gmTools.get_unique_filename (
                                      prefix = 'gm-LinuxMedNews_demographics-',
                                      suffix = '.xml'
                              )

                      dob_format = '%Y-%m-%d'
                      pat = etree.Element('patient')

                      first = etree.SubElement(pat, 'firstname')
                      first.text = gmTools.coalesce(self._payload[self._idx['firstnames']], '')

                      last = etree.SubElement(pat, 'lastname')
                      last.text = gmTools.coalesce(self._payload[self._idx['lastnames']], '')

                      # privacy
                      #middle = etree.SubElement(pat, u'middlename')
                      #middle.set(u'comment', _('preferred name/call name/...'))
                      #middle.text = gmTools.coalesce(self._payload[self._idx['preferred']], u'')

                      pref = etree.SubElement(pat, 'name_prefix')
                      pref.text = gmTools.coalesce(self._payload[self._idx['title']], '')

                      suff = etree.SubElement(pat, 'name_suffix')
                      suff.text = ''

                      dob = etree.SubElement(pat, 'DOB')
                      dob.set('format', dob_format)
                      dob.text = gmDateTime.pydt_strftime(self._payload[self._idx['dob']], dob_format, accuracy = gmDateTime.acc_days, none_str = '')

                      gender = etree.SubElement(pat, 'gender')
                      gender.set('comment', self.gender_string)
                      if self._payload[self._idx['gender']] is None:
                              gender.text = ''
                      else:
                              gender.text = map_gender2mf[self._payload[self._idx['gender']]]

                      home = etree.SubElement(pat, 'home_address')
                      adrs = self.get_addresses(address_type = 'home')
                      if len(adrs) > 0:
                              adr = adrs[0]
                              city = etree.SubElement(home, 'city')
                              city.set('comment', gmTools.coalesce(adr['suburb'], ''))
                              city.text = gmTools.coalesce(adr['urb'], '')

                              region = etree.SubElement(home, 'region')
                              region.set('comment', gmTools.coalesce(adr['l10n_region'], ''))
                              region.text = gmTools.coalesce(adr['code_region'], '')

                              zipcode = etree.SubElement(home, 'postal_code')
                              zipcode.text = gmTools.coalesce(adr['postcode'], '')

                              street = etree.SubElement(home, 'street')
                              street.set('comment', gmTools.coalesce(adr['notes_street'], ''))
                              street.text = gmTools.coalesce(adr['street'], '')

                              no = etree.SubElement(home, 'number')
                              no.set('subunit', gmTools.coalesce(adr['subunit'], ''))
                              no.set('comment', gmTools.coalesce(adr['notes_subunit'], ''))
                              no.text = gmTools.coalesce(adr['number'], '')

                              country = etree.SubElement(home, 'country')
                              country.set('comment', adr['l10n_country'])
                              country.text = gmTools.coalesce(adr['code_country'], '')

                      phone = etree.SubElement(pat, 'home_phone')
                      rec = self.get_comm_channels(comm_medium = 'homephone')
                      if len(rec) > 0:
                              if not rec[0]['is_confidential']:
                                      phone.set('comment', gmTools.coalesce(rec[0]['comment'], ''))
                                      phone.text = rec[0]['url']

                      phone = etree.SubElement(pat, 'work_phone')
                      rec = self.get_comm_channels(comm_medium = 'workphone')
                      if len(rec) > 0:
                              if not rec[0]['is_confidential']:
                                      phone.set('comment', gmTools.coalesce(rec[0]['comment'], ''))
                                      phone.text = rec[0]['url']

                      phone = etree.SubElement(pat, 'cell_phone')
                      rec = self.get_comm_channels(comm_medium = 'mobile')
                      if len(rec) > 0:
                              if not rec[0]['is_confidential']:
                                      phone.set('comment', gmTools.coalesce(rec[0]['comment'], ''))
                                      phone.text = rec[0]['url']

                      tree = etree.ElementTree(pat)
                      tree.write(filename, encoding = 'UTF-8')

                      return filename

              #--------------------------------------------------------
              def export_as_vcard(self, filename=None):
                      # http://vobject.skyhouseconsulting.com/usage.html
                      # http://en.wikipedia.org/wiki/VCard
                      # http://svn.osafoundation.org/vobject/trunk/vobject/vcard.py
                      # http://www.ietf.org/rfc/rfc2426.txt

                      dob_format = '%Y%m%d'

                      import vobject

                      vc = vobject.vCard()
                      vc.add('kind')
                      vc.kind.value = 'individual'

                      vc.add('fn')
                      vc.fn.value = self.get_description(with_nickname = False)       # privacy
                      vc.add('n')
                      vc.n.value = vobject.vcard.Name(family = self._payload[self._idx['lastnames']], given = self._payload[self._idx['firstnames']])
                      # privacy
                      #vc.add(u'nickname')
                      #vc.nickname.value = gmTools.coalesce(self._payload[self._idx['preferred']], u'')
                      vc.add('title')
                      vc.title.value = gmTools.coalesce(self._payload[self._idx['title']], '')
                      vc.add('gender')
                      # FIXME: dont know how to add gender_string after ';'
                      vc.gender.value = map_gender2vcard[self._payload[self._idx['gender']]]#, self.gender_string
                      vc.add('bday')
                      vc.bday.value = gmDateTime.pydt_strftime(self._payload[self._idx['dob']], dob_format, accuracy = gmDateTime.acc_days, none_str = '')

                      channels = self.get_comm_channels(comm_medium = 'homephone')
                      if len(channels) > 0:
                              if not channels[0]['is_confidential']:
                                      vc.add('tel')
                                      vc.tel.value = channels[0]['url']
                                      vc.tel.type_param = 'HOME'
                      channels = self.get_comm_channels(comm_medium = 'workphone')
                      if len(channels) > 0:
                              if not channels[0]['is_confidential']:
                                      vc.add('tel')
                                      vc.tel.value = channels[0]['url']
                                      vc.tel.type_param = 'WORK'
                      channels = self.get_comm_channels(comm_medium = 'mobile')
                      if len(channels) > 0:
                              if not channels[0]['is_confidential']:
                                      vc.add('tel')
                                      vc.tel.value = channels[0]['url']
                                      vc.tel.type_param = 'CELL'
                      channels = self.get_comm_channels(comm_medium = 'fax')
                      if len(channels) > 0:
                              if not channels[0]['is_confidential']:
                                      vc.add('tel')
                                      vc.tel.value = channels[0]['url']
                                      vc.tel.type_param = 'FAX'
                      channels = self.get_comm_channels(comm_medium = 'email')
                      if len(channels) > 0:
                              if not channels[0]['is_confidential']:
                                      vc.add('email')
                                      vc.tel.value = channels[0]['url']
                                      vc.tel.type_param = 'INTERNET'
                      channels = self.get_comm_channels(comm_medium = 'web')
                      if len(channels) > 0:
                              if not channels[0]['is_confidential']:
                                      vc.add('url')
                                      vc.tel.value = channels[0]['url']
                                      vc.tel.type_param = 'INTERNET'

                      adrs = self.get_addresses(address_type = 'home')
                      if len(adrs) > 0:
                              home_adr = adrs[0]
                              vc.add('adr')
                              vc.adr.type_param = 'HOME'
                              vc.adr.value = vobject.vcard.Address()
                              vc_adr = vc.adr.value
                              vc_adr.extended = gmTools.coalesce(home_adr['subunit'], '')
                              vc_adr.street = gmTools.coalesce(home_adr['street'], '', '%s ') + gmTools.coalesce(home_adr['number'], '')
                              vc_adr.region = gmTools.coalesce(home_adr['l10n_region'], '')
                              vc_adr.code = gmTools.coalesce(home_adr['postcode'], '')
                              vc_adr.city = gmTools.coalesce(home_adr['urb'], '')
                              vc_adr.country = gmTools.coalesce(home_adr['l10n_country'], '')

                      #photo (base64)

                      if filename is None:
                              filename = gmTools.get_unique_filename (
                                      prefix = 'gm-patient-',
                                      suffix = '.vcf'
                              )
                      vcf = open(filename, mode = 'wt', encoding = 'utf8')
                      try:
                              vcf.write(vc.serialize())
                      except UnicodeDecodeError:
                              _log.exception('failed to serialize VCF data')
                              vcf.close()
                              return 'cannot-serialize.vcf'
                      vcf.close()

                      return filename

              #--------------------------------------------------------
              def export_as_mecard(self, filename=None):
                      if filename is None:
                              filename = gmTools.get_unique_filename (
                                      prefix = 'gm-patient-',
                                      suffix = '.mcf'
                              )
                      with open(filename, mode = 'wt', encoding = 'utf8') as mecard_file:
                              mecard_file.write(self.MECARD)
                      return filename

              #--------------------------------------------------------
              def _get_mecard(self):
                      """
                      http://blog.thenetimpact.com/2011/07/decoding-qr-codes-how-to-format-data-for-qr-code-generators/
                      https://www.nttdocomo.co.jp/english/service/developer/make/content/barcode/function/application/addressbook/index.html

                      MECARD:N:NAME;ADR:pobox,subunit,unit,street,ort,region,zip,country;TEL:111111111;FAX:22222222;EMAIL:mail@praxis.org;

                      MECARD:N:lastname,firstname;BDAY:YYYYMMDD;ADR:pobox,subunit,number,street,location,region,zip,country;EMAIL:...;TEL:...;FAX:...;URL:...;;
                      MECARD:N:$<lastname::::>$,$<firstname::::>$;BDAY:$<date_of_birth::%Y%m%d::>$;ADR:,$<adr_subunit::home::>$,$<adr_number::home::>$,$<adr_street::home::>$,$<adr_location::home::>$,,$<adr_postcode::home::>$,$<adr_country::home::>$;;
                      """
                      mecard_fields = [
                              'MECARD:N:%s,%s' % (
                                      self._payload[self._idx['lastnames']].strip(),
                                      self._payload[self._idx['firstnames']].strip()
                              )
                      ]
                      if self._payload[self._idx['dob']] is not None:
                              mecard_fields.append('BDAY:%s' % self._payload[self._idx['dob']].strftime('%Y%m%d'))
                      adrs = self.get_addresses(address_type = 'home')
                      if len(adrs) > 0:
                              mecard_fields.append('ADR:,%(subunit)s,%(number)s,%(street)s,%(urb)s,,%(postcode)s,%(l10n_country)s' % adrs[0])
                      comms = self.get_comm_channels(comm_medium = 'homephone')
                      if len(comms) > 0:
                              if not comms[0]['is_confidential']:
                                      mecard_fields.append('TEL:%s' % comms[0]['url'].strip())
                      comms = self.get_comm_channels(comm_medium = 'fax')
                      if len(comms) > 0:
                              if not comms[0]['is_confidential']:
                                      mecard_fields.append('FAX:%s' % comms[0]['url'].strip())
                      comms = self.get_comm_channels(comm_medium = 'email')
                      if len(comms) > 0:
                              if not comms[0]['is_confidential']:
                                      mecard_fields.append('EMAIL:%s' % comms[0]['url'].strip())
                      if len(adrs) > 0:
                              mecard_fields.append('URL:%s' % adrs[0].as_map_url)
                      MECARD = ';'.join(mecard_fields) + ';'
                      return MECARD

              MECARD = property(_get_mecard)

              #--------------------------------------------------------
              # occupations API
              #--------------------------------------------------------
              def get_occupations(self):
                      return gmDemographicRecord.get_occupations(pk_identity = self.pk_obj)

              #--------------------------------------------------------
              def link_occupation(self, occupation=None, activities=None):
                      """Link an occupation with a patient, creating the occupation if it does not exists.

                              @param occupation The name of the occupation to link the patient to.
                      """
                      if (activities is None) and (occupation is None):
                              return True

                      occupation = occupation.strip()
                      if len(occupation) == 0:
                              return True

                      if activities is not None:
                              activities = activities.strip()

                      args = {'act': activities, 'pat_id': self.pk_obj, 'job': occupation}

                      cmd = "select activities from dem.v_person_jobs where pk_identity = %(pat_id)s and l10n_occupation = _(%(job)s)"
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])

                      queries = []
                      if len(rows) == 0:
                              queries.append ({
                                      'cmd': "INSERT INTO dem.lnk_job2person (fk_identity, fk_occupation, activities) VALUES (%(pat_id)s, dem.create_occupation(%(job)s), %(act)s)",
                                      'args': args
                              })
                      else:
                              if rows[0]['activities'] != activities:
                                      queries.append ({
                                              'cmd': "update dem.lnk_job2person set activities=%(act)s where fk_identity=%(pat_id)s and fk_occupation=(select id from dem.occupation where _(name) = _(%(job)s))",
                                              'args': args
                                      })

                      rows, idx = gmPG2.run_rw_queries(queries = queries)

                      return True
              #--------------------------------------------------------
              def unlink_occupation(self, occupation=None):
                      if occupation is None:
                              return True
                      occupation = occupation.strip()
                      cmd = "delete from dem.lnk_job2person where fk_identity=%(pk)s and fk_occupation in (select id from dem.occupation where _(name) = _(%(job)s))"
                      rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': {'pk': self.pk_obj, 'job': occupation}}])
                      return True
              #--------------------------------------------------------
              # comms API
              #--------------------------------------------------------
              def get_comm_channels(self, comm_medium=None):
                      cmd = "select * from dem.v_person_comms where pk_identity = %s"
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': [self.pk_obj]}], get_col_idx = True)

                      filtered = rows

                      if comm_medium is not None:
                              filtered = []
                              for row in rows:
                                      if row['comm_type'] == comm_medium:
                                              filtered.append(row)

                      return [ gmDemographicRecord.cCommChannel(row = {
                                              'pk_field': 'pk_lnk_identity2comm',
                                              'data': r,
                                              'idx': idx
                                      }) for r in filtered
                              ]

              comm_channels = property(get_comm_channels, lambda x:x)
              #--------------------------------------------------------
              def link_comm_channel(self, comm_medium=None, url=None, is_confidential=False, pk_channel_type=None):
                      """Link a communication medium with a patient.

                      @param comm_medium The name of the communication medium.
                      @param url The communication resource locator.
                      @type url A str instance.
                      @param is_confidential Wether the data must be treated as confidential.
                      @type is_confidential A bool instance.
                      """
                      comm_channel = gmDemographicRecord.create_comm_channel (
                              comm_medium = comm_medium,
                              url = url,
                              is_confidential = is_confidential,
                              pk_channel_type = pk_channel_type,
                              pk_identity = self.pk_obj
                      )
                      return comm_channel
              #--------------------------------------------------------
              def unlink_comm_channel(self, comm_channel=None):
                      gmDemographicRecord.delete_comm_channel (
                              pk = comm_channel['pk_lnk_identity2comm'],
                              pk_patient = self.pk_obj
                      )
              #--------------------------------------------------------
              # contacts API
              #--------------------------------------------------------
              def get_addresses(self, address_type=None):
                      cmd = "SELECT pk_address FROM dem.v_pat_addresses WHERE pk_identity = %(pat)s"
                      args = {'pat': self.pk_obj}
                      if address_type is not None:
                              cmd = cmd + " AND address_type = %(typ)s"
                              args['typ'] = address_type

                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)
                      return [
                              gmDemographicRecord.cPatientAddress(aPK_obj = {
                                      'pk_adr': r['pk_address'],
                                      'pk_pat': self.pk_obj
                              }) for r in rows
                      ]

              #--------------------------------------------------------
              def link_address(self, number=None, street=None, postcode=None, urb=None, region_code=None, country_code=None, subunit=None, suburb=None, id_type=None, address=None, adr_type=None):
                      """Link an address with a patient, creating the address if it does not exists.

                      @param id_type The primary key of the address type.
                      """
                      if address is None:
                              address = gmDemographicRecord.create_address (
                                      country_code = country_code,
                                      region_code = region_code,
                                      urb = urb,
                                      suburb = suburb,
                                      postcode = postcode,
                                      street = street,
                                      number = number,
                                      subunit = subunit
                              )
                      if address is None:
                              return None

                      # already linked ?
                      cmd = "SELECT id_address FROM dem.lnk_person_org_address WHERE id_identity = %(pat)s AND id_address = %(adr)s"
                      args = {'pat': self.pk_obj, 'adr': address['pk_address']}
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
                      # no, link to person
                      if not rows:
                              args = {'pk_person': self.pk_obj, 'adr': address['pk_address'], 'type': id_type}
                              cmd = """
                                      INSERT INTO dem.lnk_person_org_address(id_identity, id_address)
                                      VALUES (%(pk_person)s, %(adr)s)
                                      RETURNING id_address"""
                              rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], return_data = True)
                      pk_data = {
                              'pk_adr': rows[0]['id_address'],
                              'pk_pat': self.pk_obj
                      }
                      linked_adr = gmDemographicRecord.cPatientAddress(aPK_obj = pk_data)
                      # possibly change type
                      if id_type is None:
                              if adr_type is not None:
                                      id_type = gmDemographicRecord.create_address_type(address_type = adr_type)
                      if id_type is not None:
                              linked_adr['pk_address_type'] = id_type
                              linked_adr.save()
                      return linked_adr

              #----------------------------------------------------------------------
              def unlink_address(self, address=None, pk_address=None):
                      """Remove an address from the patient.

                      The address itself stays in the database.
                      The address can be either cAdress or cPatientAdress.
                      """
                      if pk_address is None:
                              args = {'person': self.pk_obj, 'adr': address['pk_address']}
                      else:
                              args = {'person': self.pk_obj, 'adr': pk_address}
                      cmd = """
                              DELETE FROM dem.lnk_person_org_address
                              WHERE
                                      dem.lnk_person_org_address.id_identity = %(person)s
                                              AND
                                      dem.lnk_person_org_address.id_address = %(adr)s
                                              AND
                                      NOT EXISTS(SELECT 1 FROM bill.bill WHERE fk_receiver_address = dem.lnk_person_org_address.id)
                              """
                      gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
              #----------------------------------------------------------------------
              # bills API
              #----------------------------------------------------------------------
              def get_bills(self, order_by=None, pk_patient=None):
                      return gmBilling.get_bills (
                              order_by = order_by,
                              pk_patient = self.pk_obj
                      )

              bills = property(get_bills, lambda x:x)
              #----------------------------------------------------------------------
              # relatives API
              #----------------------------------------------------------------------
              def get_relatives(self):
                      cmd = """
                              SELECT
                                      d_rt.description,
                                      d_vap.*
                              FROM
                                      dem.v_all_persons d_vap,
                                      dem.relation_types d_rt,
                                      dem.lnk_person2relative d_lp2r
                              WHERE
                                      (       d_lp2r.id_identity = %(pk)s
                                                      AND
                                              d_vap.pk_identity = d_lp2r.id_relative
                                                      AND
                                              d_rt.id = d_lp2r.id_relation_type
                                      ) or (
                                              d_lp2r.id_relative = %(pk)s
                                                      AND
                                              d_vap.pk_identity = d_lp2r.id_identity
                                                      AND
                                              d_rt.inverse = d_lp2r.id_relation_type
                                      )"""
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': {'pk': self.pk_obj}}])
                      if len(rows) == 0:
                              return []
                      return [(row[0], cPerson(row = {'data': row[1:], 'idx':idx, 'pk_field': 'pk_identity'})) for row in rows]
              #--------------------------------------------------------
              def link_new_relative(self, rel_type = 'parent'):
                      # create new relative
                      id_new_relative = create_dummy_identity()

                      relative = cPerson(aPK_obj=id_new_relative)
                      # pre-fill with data from ourselves
      #               relative.copy_addresses(self)
                      relative.add_name( '**?**', self.get_names()['lastnames'])
                      # and link the two
                      if 'relatives' in self._ext_cache:
                              del self._ext_cache['relatives']
                      cmd = """
                              insert into dem.lnk_person2relative (
                                      id_identity, id_relative, id_relation_type
                              ) values (
                                      %s, %s, (select id from dem.relation_types where description = %s)
                              )"""
                      rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': [self.ID, id_new_relative, rel_type  ]}])
                      return True
              #----------------------------------------------------------------------
              def delete_relative(self, relation):
                      # unlink only, don't delete relative itself
                      self.set_relative(None, relation)
              #--------------------------------------------------------
              def _get_emergency_contact_from_database(self):
                      if self._payload[self._idx['pk_emergency_contact']] is None:
                              return None
                      return cPerson(self._payload[self._idx['pk_emergency_contact']])

              emergency_contact_in_database = property(_get_emergency_contact_from_database, lambda x:x)

              #----------------------------------------------------------------------
              # age/dob related
              #----------------------------------------------------------------------
              def get_formatted_dob(self, format='%Y %b %d', none_string=None, honor_estimation=False):
                      return gmDateTime.format_dob (
                              self._payload[self._idx['dob']],
                              format = format,
                              none_string = none_string,
                              dob_is_estimated = self._payload[self._idx['dob_is_estimated']] and honor_estimation
                      )

              #----------------------------------------------------------------------
              def get_medical_age(self, at_date=None):
                      dob = self['dob']
                      if dob is None:
                              return '??'

                      if at_date is None:
                              if self['deceased']:
                                      at_date = self['deceased']
                                      _at_desc = _('date of death')
                              else:
                                      at_date = gmDateTime.pydt_now_here()
                                      _at_desc = _('now')
                      else:
                              _at_desc = _('explicit')
                      if dob > at_date:
                              return _('invalid age: DOB [%s] after reference date [%s] (%s)') % (dob, at_date, _at_desc)

                      return '%s%s' % (
                              gmTools.bool2subst (
                                      self._payload[self._idx['dob_is_estimated']],
                                      gmTools.u_almost_equal_to,
                                      ''
                              ),
                              gmDateTime.format_apparent_age_medically (
                                      age = gmDateTime.calculate_apparent_age (
                                              start = dob,
                                              end = at_date
                                      )
                              )
                      )

              #----------------------------------------------------------------------
              def dob_in_range(self, min_distance='1 week', max_distance='1 week'):
                      if self['dob'] is None:
                              return False

                      cmd = 'select dem.dob_is_in_range(%(dob)s, %(min)s, %(max)s)'
                      rows, idx = gmPG2.run_ro_queries (
                              queries = [{
                                      'cmd': cmd,
                                      'args': {'dob': self['dob'], 'min': min_distance, 'max': max_distance}
                              }]
                      )
                      return rows[0][0]

              #----------------------------------------------------------------------
              def _get_current_birthday_passed(self):
                      if self['dob'] is None:
                              return None
                      now = gmDateTime.pydt_now_here()
                      if now.month < self['dob'].month:
                              return False
                      if now.month > self['dob'].month:
                              return True
                      # -> DOB is this month
                      if now.day < self['dob'].day:
                              return False
                      if now.day > self['dob'].day:
                              return True
                      # -> DOB is today
                      return False

              current_birthday_passed = property(_get_current_birthday_passed)

              #----------------------------------------------------------------------
              def _get_birthday_this_year(self):
                      if self['dob'] is None:
                              return None
                      now = gmDateTime.pydt_now_here()
                      return gmDateTime.pydt_replace (
                              dt = self['dob'],
                              year = now.year,
                              strict = False
                      )

              birthday_this_year = property(_get_birthday_this_year)

              #----------------------------------------------------------------------
              def _get_birthday_next_year(self):
                      if self['dob'] is None:
                              return None
                      now = gmDateTime.pydt_now_here()
                      return gmDateTime.pydt_replace (
                              dt = self['dob'],
                              year = now.year + 1,
                              strict = False
                      )

              birthday_next_year = property(_get_birthday_next_year)

              #----------------------------------------------------------------------
              def _get_birthday_last_year(self):
                      if self['dob'] is None:
                              return None
                      now = gmDateTime.pydt_now_here()
                      return gmDateTime.pydt_replace (
                              dt = self['dob'],
                              year = now.year - 1,
                              strict = False
                      )

              birthday_last_year = property(_get_birthday_last_year, lambda x:x)

              #----------------------------------------------------------------------
              # practice related
              #----------------------------------------------------------------------
              def get_last_encounter(self):
                      cmd = 'select * from clin.v_most_recent_encounters where pk_patient=%s'
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': [self._payload[self._idx['pk_identity']]]}])
                      if len(rows) > 0:
                              return rows[0]
                      else:
                              return None
              #--------------------------------------------------------
              def get_messages(self, order_by=None):
                      return gmProviderInbox.get_inbox_messages(pk_patient = self._payload[self._idx['pk_identity']], order_by = order_by)

              messages = property(get_messages, lambda x:x)
              #--------------------------------------------------------
              def _get_overdue_messages(self):
                      return gmProviderInbox.get_overdue_messages(pk_patient = self._payload[self._idx['pk_identity']])

              overdue_messages = property(_get_overdue_messages, lambda x:x)

              #--------------------------------------------------------
              def delete_message(self, pk=None):
                      return gmProviderInbox.delete_inbox_message(inbox_message = pk)

              #--------------------------------------------------------
              def _get_dynamic_hints(self, pk_encounter=None):
                      return gmAutoHints.get_hints_for_patient (
                              pk_identity = self._payload[self._idx['pk_identity']],
                              pk_encounter = pk_encounter
                      )

              dynamic_hints = property(_get_dynamic_hints, lambda x:x)

              #--------------------------------------------------------
              def _get_suppressed_hints(self):
                      return gmAutoHints.get_suppressed_hints(pk_identity = self._payload[self._idx['pk_identity']])

              suppressed_hints = property(_get_suppressed_hints, lambda x:x)

              #--------------------------------------------------------
              def _get_primary_provider_identity(self):
                      if self._payload[self._idx['pk_primary_provider']] is None:
                              return None
                      cmd = "SELECT * FROM dem.v_all_persons WHERE pk_identity = (SELECT pk_identity FROM dem.v_staff WHERE pk_staff = %(pk_staff)s)"
                      args = {'pk_staff': self._payload[self._idx['pk_primary_provider']]}
                      rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)
                      if len(rows) == 0:
                              return None
                      return cPerson(row = {'data': rows[0], 'idx': idx, 'pk_field': 'pk_identity'})

              primary_provider_identity = property(_get_primary_provider_identity, lambda x:x)

              #--------------------------------------------------------
              def _get_primary_provider(self):
                      if self._payload[self._idx['pk_primary_provider']] is None:
                              return None
                      from Gnumed.business import gmStaff
                      return gmStaff.cStaff(aPK_obj = self._payload[self._idx['pk_primary_provider']])

              primary_provider = property(_get_primary_provider, lambda x:x)

              #----------------------------------------------------------------------
              # convenience
              #----------------------------------------------------------------------
              def get_subdir_name(self):
                      """Format patient demographics into patient specific path name fragment."""

                      return gmTools.fname_sanitize('%s-%s-%s-ID_%s' % (
                              self._payload[self._idx['lastnames']],
                              self._payload[self._idx['firstnames']],
                              self.get_formatted_dob(format = '%Y-%m-%d'),
                              self._payload[self._idx['pk_identity']]         # make unique across "same" patients
                      ))
                      #).replace (
                      #       u'\u2248', u''                  # "approximately", having been added by dob_is_estimated
                      #)

              subdir_name = property(get_subdir_name, lambda x:x)

  ### Ancestors

  - cBusinessDBObject

  ### Subclasses

  - cPatient

  ### Instance variables

  `var ID`
    Expand source code

        def _get_ID(self):
                return self._payload[self._idx['pk_identity']]

  `var MECARD`

    http://blog.thenetimpact.com/2011/07/decoding-qr-codes-how-to-format-data-for-qr-code-generators/ https://www.nttdocomo.co.jp/english/service/developer/make/content/barcode/function/application/addressbook/index.html

    MECARD:N:NAME;ADR:pobox,subunit,unit,street,ort,region,zip,country;TEL:111111111;FAX:22222222;EMAIL:mail@praxis.org;

    MECARD:N:lastname,firstname;BDAY:YYYYMMDD;ADR:pobox,subunit,number,street,location,region,zip,country;EMAIL:…;TEL:…;FAX:…;URL:…;; MECARD:N:$$,$$;BDAY:$$;ADR:,$$,$$,$$,$$,,$$,$$;;

    Expand source code

        def _get_mecard(self):
                """
                http://blog.thenetimpact.com/2011/07/decoding-qr-codes-how-to-format-data-for-qr-code-generators/
                https://www.nttdocomo.co.jp/english/service/developer/make/content/barcode/function/application/addressbook/index.html

                MECARD:N:NAME;ADR:pobox,subunit,unit,street,ort,region,zip,country;TEL:111111111;FAX:22222222;EMAIL:mail@praxis.org;

                MECARD:N:lastname,firstname;BDAY:YYYYMMDD;ADR:pobox,subunit,number,street,location,region,zip,country;EMAIL:...;TEL:...;FAX:...;URL:...;;
                MECARD:N:$<lastname::::>$,$<firstname::::>$;BDAY:$<date_of_birth::%Y%m%d::>$;ADR:,$<adr_subunit::home::>$,$<adr_number::home::>$,$<adr_street::home::>$,$<adr_location::home::>$,,$<adr_postcode::home::>$,$<adr_country::home::>$;;
                """
                mecard_fields = [
                        'MECARD:N:%s,%s' % (
                                self._payload[self._idx['lastnames']].strip(),
                                self._payload[self._idx['firstnames']].strip()
                        )
                ]
                if self._payload[self._idx['dob']] is not None:
                        mecard_fields.append('BDAY:%s' % self._payload[self._idx['dob']].strftime('%Y%m%d'))
                adrs = self.get_addresses(address_type = 'home')
                if len(adrs) > 0:
                        mecard_fields.append('ADR:,%(subunit)s,%(number)s,%(street)s,%(urb)s,,%(postcode)s,%(l10n_country)s' % adrs[0])
                comms = self.get_comm_channels(comm_medium = 'homephone')
                if len(comms) > 0:
                        if not comms[0]['is_confidential']:
                                mecard_fields.append('TEL:%s' % comms[0]['url'].strip())
                comms = self.get_comm_channels(comm_medium = 'fax')
                if len(comms) > 0:
                        if not comms[0]['is_confidential']:
                                mecard_fields.append('FAX:%s' % comms[0]['url'].strip())
                comms = self.get_comm_channels(comm_medium = 'email')
                if len(comms) > 0:
                        if not comms[0]['is_confidential']:
                                mecard_fields.append('EMAIL:%s' % comms[0]['url'].strip())
                if len(adrs) > 0:
                        mecard_fields.append('URL:%s' % adrs[0].as_map_url)
                MECARD = ';'.join(mecard_fields) + ';'
                return MECARD

  `var active_name`
    Expand source code

        def get_active_name(self):
                names = self.get_names(active_only = True)
                if len(names) == 0:
                        _log.error('cannot retrieve active name for patient [%s]', self._payload[self._idx['pk_identity']])
                        return None
                return names[0]

  `var as_patient`
    Expand source code

        def _get_as_patient(self):
                return cPatient(self._payload[self._idx['pk_identity']])

  `var bills`
    Expand source code

        def get_bills(self, order_by=None, pk_patient=None):
                return gmBilling.get_bills (
                        order_by = order_by,
                        pk_patient = self.pk_obj
                )

  `var birthday_last_year`
    Expand source code

        def _get_birthday_last_year(self):
                if self['dob'] is None:
                        return None
                now = gmDateTime.pydt_now_here()
                return gmDateTime.pydt_replace (
                        dt = self['dob'],
                        year = now.year - 1,
                        strict = False
                )

  `var birthday_next_year`
    Expand source code

        def _get_birthday_next_year(self):
                if self['dob'] is None:
                        return None
                now = gmDateTime.pydt_now_here()
                return gmDateTime.pydt_replace (
                        dt = self['dob'],
                        year = now.year + 1,
                        strict = False
                )

  `var birthday_this_year`
    Expand source code

        def _get_birthday_this_year(self):
                if self['dob'] is None:
                        return None
                now = gmDateTime.pydt_now_here()
                return gmDateTime.pydt_replace (
                        dt = self['dob'],
                        year = now.year,
                        strict = False
                )

  `var comm_channels`
    Expand source code

        def get_comm_channels(self, comm_medium=None):
                cmd = "select * from dem.v_person_comms where pk_identity = %s"
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': [self.pk_obj]}], get_col_idx = True)

                filtered = rows

                if comm_medium is not None:
                        filtered = []
                        for row in rows:
                                if row['comm_type'] == comm_medium:
                                        filtered.append(row)

                return [ gmDemographicRecord.cCommChannel(row = {
                                        'pk_field': 'pk_lnk_identity2comm',
                                        'data': r,
                                        'idx': idx
                                }) for r in filtered
                        ]

  `var current_birthday_passed`
    Expand source code

        def _get_current_birthday_passed(self):
                if self['dob'] is None:
                        return None
                now = gmDateTime.pydt_now_here()
                if now.month < self['dob'].month:
                        return False
                if now.month > self['dob'].month:
                        return True
                # -> DOB is this month
                if now.day < self['dob'].day:
                        return False
                if now.day > self['dob'].day:
                        return True
                # -> DOB is today
                return False

  `var dynamic_hints`
    Expand source code

        def _get_dynamic_hints(self, pk_encounter=None):
                return gmAutoHints.get_hints_for_patient (
                        pk_identity = self._payload[self._idx['pk_identity']],
                        pk_encounter = pk_encounter
                )

  `var emergency_contact_in_database`
    Expand source code

        def _get_emergency_contact_from_database(self):
                if self._payload[self._idx['pk_emergency_contact']] is None:
                        return None
                return cPerson(self._payload[self._idx['pk_emergency_contact']])

  `var export_area`
    Expand source code

        def _get_export_area(self):
                return gmExportArea.cExportArea(self.ID)

  `var external_id_suggestion`
    Expand source code

        def suggest_external_id(self, target=None):
                dob = self.get_formatted_dob(format = '%Y%m%d', none_string = '?dob?')
                gender = gmTools.coalesce(self['gender'], '?gender?')
                pk = '#GMd::PK::%s#' % self.ID
                name = self.active_name
                last = ' '.join(p for p in name['lastnames'].split("-"))
                last = ' '.join(p for p in last.split("."))
                last = ' '.join(p for p in last.split("'"))
                last = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in last.split(' '))
                first = ' '.join(p for p in name['firstnames'].split("-"))
                first = ' '.join(p for p in first.split("."))
                first = ' '.join(p for p in first.split("'"))
                first = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in first.split(' '))
                suggestion_parts = ['GMd']
                if target is not None:
                        suggestion_parts.append(target)
                suggestion_parts.append(last)
                suggestion_parts.append(first)
                suggestion_parts.append(dob)
                suggestion_parts.append(gender)
                suggestion_parts.append(pk)
                suggestion = '-'.join (suggestion_parts)
                try:
                        import unidecode
                        suggestion = unidecode.unidecode(suggestion)
                except ImportError:
                        _log.debug('cannot transliterate external ID suggestion, <unidecode> module not installed')
                return suggestion

  `var external_ids`
    Expand source code

        def get_external_ids(self, id_type=None, issuer=None):
                where_parts = ['pk_identity = %(pat)s']
                args = {'pat': self.ID}

                if id_type is not None:
                        where_parts.append('name = %(name)s')
                        args['name'] = id_type.strip()

                if issuer is not None:
                        where_parts.append('issuer = %(issuer)s')
                        args['issuer'] = issuer.strip()

                cmd = "SELECT * FROM dem.v_external_ids4identity WHERE %s" % ' AND '.join(where_parts)
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])

                return rows

  `var gender_list`
    Expand source code

        def _get_gender_list(self):
                gender_list, tmp = get_gender_list()
                return gender_list

  `var gender_string`
    Expand source code

        def _get_gender_string(self):
                return map_gender2string(gender = self._payload[self._idx['gender']])

  `var gender_symbol`
    Expand source code

        def _get_gender_symbol(self):
                return map_gender2symbol[self._payload[self._idx['gender']]]

  `var is_patient`
    Expand source code

        def _get_is_patient(self):
                return identity_is_patient(self._payload[self._idx['pk_identity']])

  `var messages`
    Expand source code

        def get_messages(self, order_by=None):
                return gmProviderInbox.get_inbox_messages(pk_patient = self._payload[self._idx['pk_identity']], order_by = order_by)

  `var overdue_messages`
    Expand source code

        def _get_overdue_messages(self):
                return gmProviderInbox.get_overdue_messages(pk_patient = self._payload[self._idx['pk_identity']])

  `var primary_provider`
    Expand source code

        def _get_primary_provider(self):
                if self._payload[self._idx['pk_primary_provider']] is None:
                        return None
                from Gnumed.business import gmStaff
                return gmStaff.cStaff(aPK_obj = self._payload[self._idx['pk_primary_provider']])

  `var primary_provider_identity`
    Expand source code

        def _get_primary_provider_identity(self):
                if self._payload[self._idx['pk_primary_provider']] is None:
                        return None
                cmd = "SELECT * FROM dem.v_all_persons WHERE pk_identity = (SELECT pk_identity FROM dem.v_staff WHERE pk_staff = %(pk_staff)s)"
                args = {'pk_staff': self._payload[self._idx['pk_primary_provider']]}
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)
                if len(rows) == 0:
                        return None
                return cPerson(row = {'data': rows[0], 'idx': idx, 'pk_field': 'pk_identity'})

  `var subdir_name`

    Format patient demographics into patient specific path name fragment.

    Expand source code

        def get_subdir_name(self):
                """Format patient demographics into patient specific path name fragment."""

                return gmTools.fname_sanitize('%s-%s-%s-ID_%s' % (
                        self._payload[self._idx['lastnames']],
                        self._payload[self._idx['firstnames']],
                        self.get_formatted_dob(format = '%Y-%m-%d'),
                        self._payload[self._idx['pk_identity']]         # make unique across "same" patients
                ))

  `var suppressed_hints`
    Expand source code

        def _get_suppressed_hints(self):
                return gmAutoHints.get_suppressed_hints(pk_identity = self._payload[self._idx['pk_identity']])

  `var tags`
    Expand source code

        def get_tags(self, order_by=None):
                if order_by is None:
                        order_by = ''
                else:
                        order_by = 'ORDER BY %s' % order_by

                cmd = gmDemographicRecord._SQL_get_person_tags % ('pk_identity = %%(pat)s %s' % order_by)
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': {'pat': self.ID}}], get_col_idx = True)

                return [ gmDemographicRecord.cPersonTag(row = {'data': r, 'idx': idx, 'pk_field': 'pk_identity_tag'}) for r in rows ]

  `var waiting_list_entries`
    Expand source code

        def get_waiting_list_entry(self):
                cmd = """SELECT * FROM clin.v_waiting_list WHERE pk_identity = %(pat)s"""
                args = {'pat': self.ID}
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
                return rows

  ### Methods

  `def add_external_id(self, type_name=None, value=None, issuer=None, comment=None, pk_type=None)`

    Adds an external ID to the patient.

    creates ID type if necessary

    Expand source code

        def add_external_id(self, type_name=None, value=None, issuer=None, comment=None, pk_type=None):
                """Adds an external ID to the patient.

                creates ID type if necessary
                """
                # check for existing ID
                if pk_type is not None:
                        cmd = """
                                select * from dem.v_external_ids4identity where
                                pk_identity = %(pat)s and
                                pk_type = %(pk_type)s and
                                value = %(val)s"""
                else:
                        # by type/value/issuer
                        if issuer is None:
                                cmd = """
                                        select * from dem.v_external_ids4identity where
                                        pk_identity = %(pat)s and
                                        name = %(name)s and
                                        value = %(val)s"""
                        else:
                                cmd = """
                                        select * from dem.v_external_ids4identity where
                                                pk_identity = %(pat)s and
                                                name = %(name)s and
                                                value = %(val)s and
                                                issuer = %(issuer)s"""
                args = {
                        'pat': self.ID,
                        'name': type_name,
                        'val': value,
                        'issuer': issuer,
                        'pk_type': pk_type
                }
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])

                # create new ID if not found
                if len(rows) == 0:

                        args = {
                                'pat': self.ID,
                                'val': value,
                                'type_name': type_name,
                                'pk_type': pk_type,
                                'issuer': issuer,
                                'comment': comment
                        }

                        if pk_type is None:
                                cmd = """insert into dem.lnk_identity2ext_id (external_id, fk_origin, comment, id_identity) values (
                                        %(val)s,
                                        (select dem.add_external_id_type(%(type_name)s, %(issuer)s)),
                                        %(comment)s,
                                        %(pat)s
                                )"""
                        else:
                                cmd = """insert into dem.lnk_identity2ext_id (external_id, fk_origin, comment, id_identity) values (
                                        %(val)s,
                                        %(pk_type)s,
                                        %(comment)s,
                                        %(pat)s
                                )"""

                        rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])

                # or update comment of existing ID
                else:
                        row = rows[0]
                        if comment is not None:
                                # comment not already there ?
                                if gmTools.coalesce(row['comment'], '').find(comment.strip()) == -1:
                                        comment = '%s%s' % (gmTools.coalesce(row['comment'], '', '%s // '), comment.strip)
                                        cmd = "update dem.lnk_identity2ext_id set comment = %(comment)s where id=%(pk)s"
                                        args = {'comment': comment, 'pk': row['pk_id']}
                                        rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])

  `def add_name(self, firstnames, lastnames, active=True)`

    Add a name.

    @param firstnames The first names. @param lastnames The last names. @param active When True, the new name will become the active one (hence setting other names to inactive) @type active A bool instance

    Expand source code

        def add_name(self, firstnames, lastnames, active=True):
                """Add a name.

                @param firstnames The first names.
                @param lastnames The last names.
                @param active When True, the new name will become the active one (hence setting other names to inactive)
                @type active A bool instance
                """
                name = create_name(self.ID, firstnames, lastnames, active)
                if active:
                        self.refetch_payload()
                return name

  `def add_tag(self, tag)`
    Expand source code

        def add_tag(self, tag):
                args = {
                        'tag': tag,
                        'identity': self.ID
                }

                # already exists ?
                cmd = "SELECT pk FROM dem.identity_tag WHERE fk_tag = %(tag)s AND fk_identity = %(identity)s"
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
                if len(rows) > 0:
                        return gmDemographicRecord.cPersonTag(aPK_obj = rows[0]['pk'])

                # no, add
                cmd = """
                        INSERT INTO dem.identity_tag (
                                fk_tag,
                                fk_identity
                        ) VALUES (
                                %(tag)s,
                                %(identity)s
                        )
                        RETURNING pk
                """
                rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], return_data = True, get_col_idx = False)
                return gmDemographicRecord.cPersonTag(aPK_obj = rows[0]['pk'])

  `def assimilate_identity(self, other_identity=None, link_obj=None)`

    Merge another identity into this one.

    Keep this one. Delete other one.

    Expand source code

        def assimilate_identity(self, other_identity=None, link_obj=None):
                """Merge another identity into this one.

                Keep this one. Delete other one."""

                if other_identity.ID == self.ID:
                        return True, None

                curr_pat = gmCurrentPatient()
                if curr_pat.connected:
                        if other_identity.ID == curr_pat.ID:
                                return False, _('Cannot merge active patient into another patient.')

                now_here = gmDateTime.pydt_strftime(gmDateTime.pydt_now_here())
                distinguisher = _('merge of #%s into #%s @ %s') % (other_identity.ID, self.ID, now_here)

                queries = []
                args = {'pat2del': other_identity.ID, 'pat2keep': self.ID}

                # merge allergy state
                queries.append ({
                        'cmd': """
                                UPDATE clin.allergy_state SET
                                        has_allergy = greatest (
                                                (SELECT has_allergy FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s),
                                                (SELECT has_allergy FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s)
                                        ),
                                        -- perhaps use least() to play it safe and make it appear longer ago than it might have been, actually ?
                                        last_confirmed = greatest (
                                                (SELECT last_confirmed FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s),
                                                (SELECT last_confirmed FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s)
                                        )
                                WHERE
                                        pk = (SELECT pk_allergy_state FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s)
                        """,
                        'args': args
                })
                # delete old allergy state
                queries.append ({
                        'cmd': 'DELETE FROM clin.allergy_state WHERE pk = (SELECT pk_allergy_state FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s)',
                        'args': args
                })

                # merge patient proxy
                queries.append ({
                        'cmd': """
                                UPDATE clin.patient SET
                                        edc = coalesce (
                                                edc,
                                                (SELECT edc FROM clin.patient WHERE fk_identity = %(pat2del)s)
                                        )
                                WHERE
                                        fk_identity = %(pat2keep)s
                        """,
                        'args': args
                })

                # transfer names
                # 1) hard-disambiguate all inactive names in old patient
                #    (the active one will be disambiguated upon being moved)
                queries.append ({
                        'cmd': """
                                UPDATE dem.names d_n1 SET
                                        comment = coalesce (
                                                comment, ''
                                        ) || coalesce (
                                                ' (from identity: "' || (SELECT comment FROM dem.identity WHERE pk = %%(pat2del)s) || '")',
                                                ''
                                        ) || ' (during: "%s")'
                                WHERE
                                        d_n1.id_identity = %%(pat2del)s
                                """ % distinguisher,
                        'args': args
                })
                # 2) move inactive ones (dupes are expected to have been eliminated in step 1 above)
                queries.append ({
                        'cmd': u"""
                                UPDATE dem.names d_n SET
                                        id_identity = %(pat2keep)s,
                                        lastnames = lastnames || ' [' || random()::TEXT || ']'
                                WHERE
                                        d_n.id_identity = %(pat2del)s
                                                AND
                                        d_n.active IS false
                                """,
                        'args': args
                })
                # 3) copy active name into pat2keep as an inactive name,
                #    because each identity MUST have at LEAST one name,
                #    we can't simply UPDATE over to pat2keep
                #    also, needs de-duplication or else it would conflict with
                #    *itself* on pat2keep
                queries.append ({
                        'cmd': """
                                INSERT INTO dem.names (
                                        id_identity, active, firstnames, preferred, comment,
                                        lastnames
                                )
                                        SELECT
                                                %(pat2keep)s, false, firstnames, preferred, comment,
                                                lastnames || ' [' || random()::text || ']'
                                        FROM dem.names d_n
                                        WHERE
                                                d_n.id_identity = %(pat2del)s
                                                        AND
                                                d_n.active IS true
                                """,
                        'args': args
                })

                # disambiguate potential dupes
                # - same-url comm channels
                queries.append ({
                        'cmd': """
                                UPDATE dem.lnk_identity2comm
                                SET url = url || ' (%s)'
                                WHERE
                                        fk_identity = %%(pat2del)s
                                                AND
                                        EXISTS (
                                                SELECT 1 FROM dem.lnk_identity2comm d_li2c
                                                WHERE d_li2c.fk_identity = %%(pat2keep)s AND d_li2c.url = url
                                        )
                                """ % distinguisher,
                        'args': args
                })
                # - same-value external IDs
                queries.append ({
                        'cmd': """
                                UPDATE dem.lnk_identity2ext_id
                                SET external_id = external_id || ' (%s)'
                                WHERE
                                        id_identity = %%(pat2del)s
                                                AND
                                        EXISTS (
                                                SELECT 1 FROM dem.lnk_identity2ext_id d_li2e
                                                WHERE
                                                        d_li2e.id_identity = %%(pat2keep)s
                                                                AND
                                                        d_li2e.external_id = external_id
                                                                AND
                                                        d_li2e.fk_origin = fk_origin
                                        )
                                """ % distinguisher,
                        'args': args
                })
                # - same addresses
                queries.append ({
                        'cmd': """
                                DELETE FROM dem.lnk_person_org_address
                                WHERE
                                        id_identity = %(pat2del)s
                                                AND
                                        id_address IN (
                                                SELECT id_address FROM dem.lnk_person_org_address d_lpoa
                                                WHERE d_lpoa.id_identity = %(pat2keep)s
                                        )
                        """,
                        'args': args
                })

                # find FKs pointing to dem.identity.pk
                FKs = gmPG2.get_foreign_keys2column (
                        schema = 'dem',
                        table = 'identity',
                        column = 'pk'
                )
                # find FKs pointing to clin.patient.fk_identity
                FKs.extend (gmPG2.get_foreign_keys2column (
                        schema = 'clin',
                        table = 'patient',
                        column = 'fk_identity'
                ))

                # generate UPDATEs
                cmd_template = 'UPDATE %s SET %s = %%(pat2keep)s WHERE %s = %%(pat2del)s'
                for FK in FKs:
                        if FK['referencing_table'] in ['dem.names', 'clin.patient']:
                                continue
                        queries.append ({
                                'cmd': cmd_template % (FK['referencing_table'], FK['referencing_column'], FK['referencing_column']),
                                'args': args
                        })

                # delete old patient proxy
                queries.append ({
                        'cmd': 'DELETE FROM clin.patient WHERE fk_identity = %(pat2del)s',
                        'args': args
                })

                # remove old identity entry
                queries.append ({
                        'cmd': 'delete from dem.identity where pk = %(pat2del)s',
                        'args': args
                })

                script_name = gmTools.get_unique_filename(prefix = 'gm-assimilate-%(pat2del)s-into-%(pat2keep)s-' % args, suffix = '.sql')
                _log.warning('identity [%s] is about to assimilate identity [%s], SQL script [%s]', self.ID, other_identity.ID, script_name)

                script = open(script_name, 'wt')
                args['date'] = gmDateTime.pydt_strftime(gmDateTime.pydt_now_here(), '%Y %B %d  %H:%M')
                script.write(_MERGE_SCRIPT_HEADER % args)
                for query in queries:
                        script.write(query['cmd'] % args)
                        script.write(';\n')
                script.write('\nROLLBACK;\n')
                script.write('--COMMIT;\n')
                script.close()

                try:
                        gmPG2.run_rw_queries(link_obj = link_obj, queries = queries, end_tx = True)
                except Exception:
                        return False, _('The merge failed. Check the log and [%s]') % script_name

                self.add_external_id (
                        type_name = 'merged GNUmed identity primary key',
                        value = 'GNUmed::pk::%s' % other_identity.ID,
                        issuer = 'GNUmed'
                )

                return True, None

  `def cleanup(self)`
    Expand source code

        def cleanup(self):
                pass

  `def delete_external_id(self, pk_ext_id=None)`
    Expand source code

        def delete_external_id(self, pk_ext_id=None):
                cmd = """
                        DELETE FROM dem.lnk_identity2ext_id
                        WHERE id_identity = %(pat)s AND id = %(pk)s"""
                args = {'pat': self.ID, 'pk': pk_ext_id}
                gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])

  `def delete_message(self, pk=None)`
    Expand source code

        def delete_message(self, pk=None):
                return gmProviderInbox.delete_inbox_message(inbox_message = pk)

  `def delete_name(self, name=None)`
    Expand source code

        def delete_name(self, name=None):
                cmd = "delete from dem.names where id = %(name)s and id_identity = %(pat)s"
                args = {'name': name['pk_name'], 'pat': self.ID}
                gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])

  `def delete_relative(self, relation)`
    Expand source code

        def delete_relative(self, relation):
                # unlink only, don't delete relative itself
                self.set_relative(None, relation)

  `def dob_in_range(self, min_distance='1 week', max_distance='1 week')`
    Expand source code

        def dob_in_range(self, min_distance='1 week', max_distance='1 week'):
                if self['dob'] is None:
                        return False

                cmd = 'select dem.dob_is_in_range(%(dob)s, %(min)s, %(max)s)'
                rows, idx = gmPG2.run_ro_queries (
                        queries = [{
                                'cmd': cmd,
                                'args': {'dob': self['dob'], 'min': min_distance, 'max': max_distance}
                        }]
                )
                return rows[0][0]

  `def export_as_gdt(self, filename=None, encoding='iso-8859-15', external_id_type=None)`
    Expand source code

        def export_as_gdt(self, filename=None, encoding='iso-8859-15', external_id_type=None):

                template = '%s%s%s\r\n'

                if filename is None:
                        filename = gmTools.get_unique_filename (
                                prefix = 'gm-patient-',
                                suffix = '.gdt'
                        )

                gdt_file = open(filename, mode = 'wt', encoding = encoding, errors = 'strict')

                gdt_file.write(template % ('013', '8000', '6301'))
                gdt_file.write(template % ('013', '9218', '2.10'))
                if external_id_type is None:
                        gdt_file.write(template % ('%03d' % (9 + len(str(self.ID))), '3000', self.ID))
                else:
                        ext_ids = self.get_external_ids(id_type = external_id_type)
                        if len(ext_ids) > 0:
                                gdt_file.write(template % ('%03d' % (9 + len(ext_ids[0]['value'])), '3000', ext_ids[0]['value']))
                gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['lastnames']])), '3101', self._payload[self._idx['lastnames']]))
                gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['firstnames']])), '3102', self._payload[self._idx['firstnames']]))
                gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['dob']].strftime('%d%m%Y'))), '3103', self._payload[self._idx['dob']].strftime('%d%m%Y')))
                gdt_file.write(template % ('010', '3110', gmXdtMappings.map_gender_gm2xdt[self._payload[self._idx['gender']]]))
                gdt_file.write(template % ('025', '6330', 'GNUmed::9206::encoding'))
                gdt_file.write(template % ('%03d' % (9 + len(encoding)), '6331', encoding))
                if external_id_type is None:
                        gdt_file.write(template % ('029', '6332', 'GNUmed::3000::source'))
                        gdt_file.write(template % ('017', '6333', 'internal'))
                else:
                        if len(ext_ids) > 0:
                                gdt_file.write(template % ('029', '6332', 'GNUmed::3000::source'))
                                gdt_file.write(template % ('%03d' % (9 + len(external_id_type)), '6333', external_id_type))

                gdt_file.close()

                return filename

  `def export_as_mecard(self, filename=None)`
    Expand source code

        def export_as_mecard(self, filename=None):
                if filename is None:
                        filename = gmTools.get_unique_filename (
                                prefix = 'gm-patient-',
                                suffix = '.mcf'
                        )
                with open(filename, mode = 'wt', encoding = 'utf8') as mecard_file:
                        mecard_file.write(self.MECARD)
                return filename

  `def export_as_vcard(self, filename=None)`
    Expand source code

        def export_as_vcard(self, filename=None):
                # http://vobject.skyhouseconsulting.com/usage.html
                # http://en.wikipedia.org/wiki/VCard
                # http://svn.osafoundation.org/vobject/trunk/vobject/vcard.py
                # http://www.ietf.org/rfc/rfc2426.txt

                dob_format = '%Y%m%d'

                import vobject

                vc = vobject.vCard()
                vc.add('kind')
                vc.kind.value = 'individual'

                vc.add('fn')
                vc.fn.value = self.get_description(with_nickname = False)       # privacy
                vc.add('n')
                vc.n.value = vobject.vcard.Name(family = self._payload[self._idx['lastnames']], given = self._payload[self._idx['firstnames']])
                # privacy
                #vc.add(u'nickname')
                #vc.nickname.value = gmTools.coalesce(self._payload[self._idx['preferred']], u'')
                vc.add('title')
                vc.title.value = gmTools.coalesce(self._payload[self._idx['title']], '')
                vc.add('gender')
                # FIXME: dont know how to add gender_string after ';'
                vc.gender.value = map_gender2vcard[self._payload[self._idx['gender']]]#, self.gender_string
                vc.add('bday')
                vc.bday.value = gmDateTime.pydt_strftime(self._payload[self._idx['dob']], dob_format, accuracy = gmDateTime.acc_days, none_str = '')

                channels = self.get_comm_channels(comm_medium = 'homephone')
                if len(channels) > 0:
                        if not channels[0]['is_confidential']:
                                vc.add('tel')
                                vc.tel.value = channels[0]['url']
                                vc.tel.type_param = 'HOME'
                channels = self.get_comm_channels(comm_medium = 'workphone')
                if len(channels) > 0:
                        if not channels[0]['is_confidential']:
                                vc.add('tel')
                                vc.tel.value = channels[0]['url']
                                vc.tel.type_param = 'WORK'
                channels = self.get_comm_channels(comm_medium = 'mobile')
                if len(channels) > 0:
                        if not channels[0]['is_confidential']:
                                vc.add('tel')
                                vc.tel.value = channels[0]['url']
                                vc.tel.type_param = 'CELL'
                channels = self.get_comm_channels(comm_medium = 'fax')
                if len(channels) > 0:
                        if not channels[0]['is_confidential']:
                                vc.add('tel')
                                vc.tel.value = channels[0]['url']
                                vc.tel.type_param = 'FAX'
                channels = self.get_comm_channels(comm_medium = 'email')
                if len(channels) > 0:
                        if not channels[0]['is_confidential']:
                                vc.add('email')
                                vc.tel.value = channels[0]['url']
                                vc.tel.type_param = 'INTERNET'
                channels = self.get_comm_channels(comm_medium = 'web')
                if len(channels) > 0:
                        if not channels[0]['is_confidential']:
                                vc.add('url')
                                vc.tel.value = channels[0]['url']
                                vc.tel.type_param = 'INTERNET'

                adrs = self.get_addresses(address_type = 'home')
                if len(adrs) > 0:
                        home_adr = adrs[0]
                        vc.add('adr')
                        vc.adr.type_param = 'HOME'
                        vc.adr.value = vobject.vcard.Address()
                        vc_adr = vc.adr.value
                        vc_adr.extended = gmTools.coalesce(home_adr['subunit'], '')
                        vc_adr.street = gmTools.coalesce(home_adr['street'], '', '%s ') + gmTools.coalesce(home_adr['number'], '')
                        vc_adr.region = gmTools.coalesce(home_adr['l10n_region'], '')
                        vc_adr.code = gmTools.coalesce(home_adr['postcode'], '')
                        vc_adr.city = gmTools.coalesce(home_adr['urb'], '')
                        vc_adr.country = gmTools.coalesce(home_adr['l10n_country'], '')

                #photo (base64)

                if filename is None:
                        filename = gmTools.get_unique_filename (
                                prefix = 'gm-patient-',
                                suffix = '.vcf'
                        )
                vcf = open(filename, mode = 'wt', encoding = 'utf8')
                try:
                        vcf.write(vc.serialize())
                except UnicodeDecodeError:
                        _log.exception('failed to serialize VCF data')
                        vcf.close()
                        return 'cannot-serialize.vcf'
                vcf.close()

                return filename

  `def export_as_xml_linuxmednews(self, filename=None)`
    Expand source code

        def export_as_xml_linuxmednews(self, filename=None):

                if filename is None:
                        filename = gmTools.get_unique_filename (
                                prefix = 'gm-LinuxMedNews_demographics-',
                                suffix = '.xml'
                        )

                dob_format = '%Y-%m-%d'
                pat = etree.Element('patient')

                first = etree.SubElement(pat, 'firstname')
                first.text = gmTools.coalesce(self._payload[self._idx['firstnames']], '')

                last = etree.SubElement(pat, 'lastname')
                last.text = gmTools.coalesce(self._payload[self._idx['lastnames']], '')

                # privacy
                #middle = etree.SubElement(pat, u'middlename')
                #middle.set(u'comment', _('preferred name/call name/...'))
                #middle.text = gmTools.coalesce(self._payload[self._idx['preferred']], u'')

                pref = etree.SubElement(pat, 'name_prefix')
                pref.text = gmTools.coalesce(self._payload[self._idx['title']], '')

                suff = etree.SubElement(pat, 'name_suffix')
                suff.text = ''

                dob = etree.SubElement(pat, 'DOB')
                dob.set('format', dob_format)
                dob.text = gmDateTime.pydt_strftime(self._payload[self._idx['dob']], dob_format, accuracy = gmDateTime.acc_days, none_str = '')

                gender = etree.SubElement(pat, 'gender')
                gender.set('comment', self.gender_string)
                if self._payload[self._idx['gender']] is None:
                        gender.text = ''
                else:
                        gender.text = map_gender2mf[self._payload[self._idx['gender']]]

                home = etree.SubElement(pat, 'home_address')
                adrs = self.get_addresses(address_type = 'home')
                if len(adrs) > 0:
                        adr = adrs[0]
                        city = etree.SubElement(home, 'city')
                        city.set('comment', gmTools.coalesce(adr['suburb'], ''))
                        city.text = gmTools.coalesce(adr['urb'], '')

                        region = etree.SubElement(home, 'region')
                        region.set('comment', gmTools.coalesce(adr['l10n_region'], ''))
                        region.text = gmTools.coalesce(adr['code_region'], '')

                        zipcode = etree.SubElement(home, 'postal_code')
                        zipcode.text = gmTools.coalesce(adr['postcode'], '')

                        street = etree.SubElement(home, 'street')
                        street.set('comment', gmTools.coalesce(adr['notes_street'], ''))
                        street.text = gmTools.coalesce(adr['street'], '')

                        no = etree.SubElement(home, 'number')
                        no.set('subunit', gmTools.coalesce(adr['subunit'], ''))
                        no.set('comment', gmTools.coalesce(adr['notes_subunit'], ''))
                        no.text = gmTools.coalesce(adr['number'], '')

                        country = etree.SubElement(home, 'country')
                        country.set('comment', adr['l10n_country'])
                        country.text = gmTools.coalesce(adr['code_country'], '')

                phone = etree.SubElement(pat, 'home_phone')
                rec = self.get_comm_channels(comm_medium = 'homephone')
                if len(rec) > 0:
                        if not rec[0]['is_confidential']:
                                phone.set('comment', gmTools.coalesce(rec[0]['comment'], ''))
                                phone.text = rec[0]['url']

                phone = etree.SubElement(pat, 'work_phone')
                rec = self.get_comm_channels(comm_medium = 'workphone')
                if len(rec) > 0:
                        if not rec[0]['is_confidential']:
                                phone.set('comment', gmTools.coalesce(rec[0]['comment'], ''))
                                phone.text = rec[0]['url']

                phone = etree.SubElement(pat, 'cell_phone')
                rec = self.get_comm_channels(comm_medium = 'mobile')
                if len(rec) > 0:
                        if not rec[0]['is_confidential']:
                                phone.set('comment', gmTools.coalesce(rec[0]['comment'], ''))
                                phone.text = rec[0]['url']

                tree = etree.ElementTree(pat)
                tree.write(filename, encoding = 'UTF-8')

                return filename

  `def get_active_name(self)`
    Expand source code

        def get_active_name(self):
                names = self.get_names(active_only = True)
                if len(names) == 0:
                        _log.error('cannot retrieve active name for patient [%s]', self._payload[self._idx['pk_identity']])
                        return None
                return names[0]

  `def get_addresses(self, address_type=None)`
    Expand source code

        def get_addresses(self, address_type=None):
                cmd = "SELECT pk_address FROM dem.v_pat_addresses WHERE pk_identity = %(pat)s"
                args = {'pat': self.pk_obj}
                if address_type is not None:
                        cmd = cmd + " AND address_type = %(typ)s"
                        args['typ'] = address_type

                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)
                return [
                        gmDemographicRecord.cPatientAddress(aPK_obj = {
                                'pk_adr': r['pk_address'],
                                'pk_pat': self.pk_obj
                        }) for r in rows
                ]

  `def get_bills(self, order_by=None, pk_patient=None)`
    Expand source code

        def get_bills(self, order_by=None, pk_patient=None):
                return gmBilling.get_bills (
                        order_by = order_by,
                        pk_patient = self.pk_obj
                )

  `def get_comm_channels(self, comm_medium=None)`
    Expand source code

        def get_comm_channels(self, comm_medium=None):
                cmd = "select * from dem.v_person_comms where pk_identity = %s"
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': [self.pk_obj]}], get_col_idx = True)

                filtered = rows

                if comm_medium is not None:
                        filtered = []
                        for row in rows:
                                if row['comm_type'] == comm_medium:
                                        filtered.append(row)

                return [ gmDemographicRecord.cCommChannel(row = {
                                        'pk_field': 'pk_lnk_identity2comm',
                                        'data': r,
                                        'idx': idx
                                }) for r in filtered
                        ]

  `def get_description(self, with_nickname=True)`
    Expand source code

        def get_description(self, with_nickname=True):
                if with_nickname:
                        template = _('%(last)s,%(title)s %(first)s%(nick)s')
                else:
                        template = _('%(last)s,%(title)s %(first)s')
                return template % {
                        'last': self._payload[self._idx['lastnames']],
                        'title': gmTools.coalesce(self._payload[self._idx['title']], '', ' %s'),
                        'first': self._payload[self._idx['firstnames']],
                        'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'")
                }

  `def get_description_gender(self, with_nickname=True)`
    Expand source code

        def get_description_gender(self, with_nickname=True):
                if with_nickname:
                        template = _('%(last)s,%(title)s %(first)s%(nick)s (%(sex)s)')
                else:
                        template = _('%(last)s,%(title)s %(first)s (%(sex)s)')
                return template % {
                        'last': self._payload[self._idx['lastnames']],
                        'title': gmTools.coalesce(self._payload[self._idx['title']], '', ' %s'),
                        'first': self._payload[self._idx['firstnames']],
                        'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'"),
                        'sex': self.gender_symbol
                }

  `def get_external_ids(self, id_type=None, issuer=None)`
    Expand source code

        def get_external_ids(self, id_type=None, issuer=None):
                where_parts = ['pk_identity = %(pat)s']
                args = {'pat': self.ID}

                if id_type is not None:
                        where_parts.append('name = %(name)s')
                        args['name'] = id_type.strip()

                if issuer is not None:
                        where_parts.append('issuer = %(issuer)s')
                        args['issuer'] = issuer.strip()

                cmd = "SELECT * FROM dem.v_external_ids4identity WHERE %s" % ' AND '.join(where_parts)
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])

                return rows

  `def get_formatted_dob(self, format='%Y %b %d', none_string=None, honor_estimation=False)`
    Expand source code

        def get_formatted_dob(self, format='%Y %b %d', none_string=None, honor_estimation=False):
                return gmDateTime.format_dob (
                        self._payload[self._idx['dob']],
                        format = format,
                        none_string = none_string,
                        dob_is_estimated = self._payload[self._idx['dob_is_estimated']] and honor_estimation
                )

  `def get_last_encounter(self)`
    Expand source code

        def get_last_encounter(self):
                cmd = 'select * from clin.v_most_recent_encounters where pk_patient=%s'
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': [self._payload[self._idx['pk_identity']]]}])
                if len(rows) > 0:
                        return rows[0]
                else:
                        return None

  `def get_medical_age(self, at_date=None)`
    Expand source code

        def get_medical_age(self, at_date=None):
                dob = self['dob']
                if dob is None:
                        return '??'

                if at_date is None:
                        if self['deceased']:
                                at_date = self['deceased']
                                _at_desc = _('date of death')
                        else:
                                at_date = gmDateTime.pydt_now_here()
                                _at_desc = _('now')
                else:
                        _at_desc = _('explicit')
                if dob > at_date:
                        return _('invalid age: DOB [%s] after reference date [%s] (%s)') % (dob, at_date, _at_desc)

                return '%s%s' % (
                        gmTools.bool2subst (
                                self._payload[self._idx['dob_is_estimated']],
                                gmTools.u_almost_equal_to,
                                ''
                        ),
                        gmDateTime.format_apparent_age_medically (
                                age = gmDateTime.calculate_apparent_age (
                                        start = dob,
                                        end = at_date
                                )
                        )
                )

  `def get_messages(self, order_by=None)`
    Expand source code

        def get_messages(self, order_by=None):
                return gmProviderInbox.get_inbox_messages(pk_patient = self._payload[self._idx['pk_identity']], order_by = order_by)

  `def get_names(self, active_only=False, exclude_active=False)`
    Expand source code

        def get_names(self, active_only=False, exclude_active=False):

                args = {'pk_pat': self._payload[self._idx['pk_identity']]}
                where_parts = ['pk_identity = %(pk_pat)s']
                if active_only:
                        where_parts.append('active_name is True')
                if exclude_active:
                        where_parts.append('active_name is False')
                cmd = """
                        SELECT *
                        FROM dem.v_person_names
                        WHERE %s
                        ORDER BY active_name DESC, lastnames, firstnames
                """ % ' AND '.join(where_parts)
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)

                if len(rows) == 0:
                        # no names registered for patient
                        return []

                names = [ cPersonName(row = {'idx': idx, 'data': r, 'pk_field': 'pk_name'}) for r in rows ]
                return names

  `def get_occupations(self)`
    Expand source code

        def get_occupations(self):
                return gmDemographicRecord.get_occupations(pk_identity = self.pk_obj)

  `def get_relatives(self)`
    Expand source code

        def get_relatives(self):
                cmd = """
                        SELECT
                                d_rt.description,
                                d_vap.*
                        FROM
                                dem.v_all_persons d_vap,
                                dem.relation_types d_rt,
                                dem.lnk_person2relative d_lp2r
                        WHERE
                                (       d_lp2r.id_identity = %(pk)s
                                                AND
                                        d_vap.pk_identity = d_lp2r.id_relative
                                                AND
                                        d_rt.id = d_lp2r.id_relation_type
                                ) or (
                                        d_lp2r.id_relative = %(pk)s
                                                AND
                                        d_vap.pk_identity = d_lp2r.id_identity
                                                AND
                                        d_rt.inverse = d_lp2r.id_relation_type
                                )"""
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': {'pk': self.pk_obj}}])
                if len(rows) == 0:
                        return []
                return [(row[0], cPerson(row = {'data': row[1:], 'idx':idx, 'pk_field': 'pk_identity'})) for row in rows]

  `def get_subdir_name(self)`

    Format patient demographics into patient specific path name fragment.

    Expand source code

        def get_subdir_name(self):
                """Format patient demographics into patient specific path name fragment."""

                return gmTools.fname_sanitize('%s-%s-%s-ID_%s' % (
                        self._payload[self._idx['lastnames']],
                        self._payload[self._idx['firstnames']],
                        self.get_formatted_dob(format = '%Y-%m-%d'),
                        self._payload[self._idx['pk_identity']]         # make unique across "same" patients
                ))

  `def get_tags(self, order_by=None)`
    Expand source code

        def get_tags(self, order_by=None):
                if order_by is None:
                        order_by = ''
                else:
                        order_by = 'ORDER BY %s' % order_by

                cmd = gmDemographicRecord._SQL_get_person_tags % ('pk_identity = %%(pat)s %s' % order_by)
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': {'pat': self.ID}}], get_col_idx = True)

                return [ gmDemographicRecord.cPersonTag(row = {'data': r, 'idx': idx, 'pk_field': 'pk_identity_tag'}) for r in rows ]

  `def get_waiting_list_entry(self)`
    Expand source code

        def get_waiting_list_entry(self):
                cmd = """SELECT * FROM clin.v_waiting_list WHERE pk_identity = %(pat)s"""
                args = {'pat': self.ID}
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
                return rows

  `def link_address(self, number=None, street=None, postcode=None, urb=None, region_code=None, country_code=None, subunit=None, suburb=None, id_type=None, address=None, adr_type=None)`

    Link an address with a patient, creating the address if it does not exists.

    @param id_type The primary key of the address type.

    Expand source code

        def link_address(self, number=None, street=None, postcode=None, urb=None, region_code=None, country_code=None, subunit=None, suburb=None, id_type=None, address=None, adr_type=None):
                """Link an address with a patient, creating the address if it does not exists.

                @param id_type The primary key of the address type.
                """
                if address is None:
                        address = gmDemographicRecord.create_address (
                                country_code = country_code,
                                region_code = region_code,
                                urb = urb,
                                suburb = suburb,
                                postcode = postcode,
                                street = street,
                                number = number,
                                subunit = subunit
                        )
                if address is None:
                        return None

                # already linked ?
                cmd = "SELECT id_address FROM dem.lnk_person_org_address WHERE id_identity = %(pat)s AND id_address = %(adr)s"
                args = {'pat': self.pk_obj, 'adr': address['pk_address']}
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
                # no, link to person
                if not rows:
                        args = {'pk_person': self.pk_obj, 'adr': address['pk_address'], 'type': id_type}
                        cmd = """
                                INSERT INTO dem.lnk_person_org_address(id_identity, id_address)
                                VALUES (%(pk_person)s, %(adr)s)
                                RETURNING id_address"""
                        rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], return_data = True)
                pk_data = {
                        'pk_adr': rows[0]['id_address'],
                        'pk_pat': self.pk_obj
                }
                linked_adr = gmDemographicRecord.cPatientAddress(aPK_obj = pk_data)
                # possibly change type
                if id_type is None:
                        if adr_type is not None:
                                id_type = gmDemographicRecord.create_address_type(address_type = adr_type)
                if id_type is not None:
                        linked_adr['pk_address_type'] = id_type
                        linked_adr.save()
                return linked_adr

  `def link_comm_channel(self, comm_medium=None, url=None, is_confidential=False, pk_channel_type=None)`

    Link a communication medium with a patient.

    @param comm_medium The name of the communication medium. @param url The communication resource locator. @type url A str instance. @param is_confidential Wether the data must be treated as confidential. @type is_confidential A bool instance.

    Expand source code

        def link_comm_channel(self, comm_medium=None, url=None, is_confidential=False, pk_channel_type=None):
                """Link a communication medium with a patient.

                @param comm_medium The name of the communication medium.
                @param url The communication resource locator.
                @type url A str instance.
                @param is_confidential Wether the data must be treated as confidential.
                @type is_confidential A bool instance.
                """
                comm_channel = gmDemographicRecord.create_comm_channel (
                        comm_medium = comm_medium,
                        url = url,
                        is_confidential = is_confidential,
                        pk_channel_type = pk_channel_type,
                        pk_identity = self.pk_obj
                )
                return comm_channel

  `def link_new_relative(self, rel_type='parent')`
    Expand source code

                def link_new_relative(self, rel_type = 'parent'):
                        # create new relative
                        id_new_relative = create_dummy_identity()

                        relative = cPerson(aPK_obj=id_new_relative)
                        # pre-fill with data from ourselves
        #               relative.copy_addresses(self)
                        relative.add_name( '**?**', self.get_names()['lastnames'])
                        # and link the two
                        if 'relatives' in self._ext_cache:
                                del self._ext_cache['relatives']
                        cmd = """
                                insert into dem.lnk_person2relative (
                                        id_identity, id_relative, id_relation_type
                                ) values (
                                        %s, %s, (select id from dem.relation_types where description = %s)
                                )"""
                        rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': [self.ID, id_new_relative, rel_type  ]}])
                        return True

  `def link_occupation(self, occupation=None, activities=None)`

    Link an occupation with a patient, creating the occupation if it does not exists.

    @param occupation The name of the occupation to link the patient to.

    Expand source code

        def link_occupation(self, occupation=None, activities=None):
                """Link an occupation with a patient, creating the occupation if it does not exists.

                        @param occupation The name of the occupation to link the patient to.
                """
                if (activities is None) and (occupation is None):
                        return True

                occupation = occupation.strip()
                if len(occupation) == 0:
                        return True

                if activities is not None:
                        activities = activities.strip()

                args = {'act': activities, 'pat_id': self.pk_obj, 'job': occupation}

                cmd = "select activities from dem.v_person_jobs where pk_identity = %(pat_id)s and l10n_occupation = _(%(job)s)"
                rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])

                queries = []
                if len(rows) == 0:
                        queries.append ({
                                'cmd': "INSERT INTO dem.lnk_job2person (fk_identity, fk_occupation, activities) VALUES (%(pat_id)s, dem.create_occupation(%(job)s), %(act)s)",
                                'args': args
                        })
                else:
                        if rows[0]['activities'] != activities:
                                queries.append ({
                                        'cmd': "update dem.lnk_job2person set activities=%(act)s where fk_identity=%(pat_id)s and fk_occupation=(select id from dem.occupation where _(name) = _(%(job)s))",
                                        'args': args
                                })

                rows, idx = gmPG2.run_rw_queries(queries = queries)

                return True

  `def put_on_waiting_list(self, urgency=0, comment=None, zone=None)`
    Expand source code

        def put_on_waiting_list(self, urgency=0, comment=None, zone=None):
                cmd = """
                        insert into clin.waiting_list (fk_patient, urgency, comment, area, list_position)
                        values (
                                %(pat)s,
                                %(urg)s,
                                %(cmt)s,
                                %(area)s,
                                (select coalesce((max(list_position) + 1), 1) from clin.waiting_list)
                        )"""
                args = {'pat': self.ID, 'urg': urgency, 'cmt': comment, 'area': zone}
                gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], verbose = True)
                gmHooks.run_hook_script(hook = 'after_waiting_list_modified')

  `def remove_tag(self, tag)`
    Expand source code

        def remove_tag(self, tag):
                cmd = "DELETE FROM dem.identity_tag WHERE pk = %(pk)s"
                gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': {'pk': tag}}])

  `def set_nickname(self, nickname=None)`

    Set the nickname. Setting the nickname only makes sense for the currently active name. @param nickname The preferred/nick/warrior name to set.

    Expand source code

        def set_nickname(self, nickname=None):
                """
                Set the nickname. Setting the nickname only makes sense for the currently
                active name.
                @param nickname The preferred/nick/warrior name to set.
                """
                if self._payload[self._idx['preferred']] == nickname:
                        return True
                rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': "SELECT dem.set_nickname(%s, %s)", 'args': [self.ID, nickname]}])
                # setting nickname doesn't change dem.identity, so other fields
                # of dem.v_active_persons do not get changed as a consequence of
                # setting the nickname, hence locally setting nickname matches
                # in-database reality
                self._payload[self._idx['preferred']] = nickname
                #self.refetch_payload()
                return True

  `def suggest_external_id(self, target=None)`
    Expand source code

        def suggest_external_id(self, target=None):
                dob = self.get_formatted_dob(format = '%Y%m%d', none_string = '?dob?')
                gender = gmTools.coalesce(self['gender'], '?gender?')
                pk = '#GMd::PK::%s#' % self.ID
                name = self.active_name
                last = ' '.join(p for p in name['lastnames'].split("-"))
                last = ' '.join(p for p in last.split("."))
                last = ' '.join(p for p in last.split("'"))
                last = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in last.split(' '))
                first = ' '.join(p for p in name['firstnames'].split("-"))
                first = ' '.join(p for p in first.split("."))
                first = ' '.join(p for p in first.split("'"))
                first = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in first.split(' '))
                suggestion_parts = ['GMd']
                if target is not None:
                        suggestion_parts.append(target)
                suggestion_parts.append(last)
                suggestion_parts.append(first)
                suggestion_parts.append(dob)
                suggestion_parts.append(gender)
                suggestion_parts.append(pk)
                suggestion = '-'.join (suggestion_parts)
                try:
                        import unidecode
                        suggestion = unidecode.unidecode(suggestion)
                except ImportError:
                        _log.debug('cannot transliterate external ID suggestion, <unidecode> module not installed')
                return suggestion

  `def suggest_external_ids(self, target=None)`

    Suggest external IDs for this person.

    Expand source code

        def suggest_external_ids(self, target=None):
                """Suggest external IDs for this person."""
                dob = self.get_formatted_dob(format = '%Y%m%d', none_string = '?dob?')
                gender = gmTools.coalesce(self['gender'], '?gender?')
                pk = '#GMd::PK::%s#' % self.ID
                suggestions = []
                for name in self.get_names(active_only = False, exclude_active = False):
                        last = ' '.join(part for part in name['lastnames'].split("-"))
                        last = ' '.join(part for part in last.split("."))
                        last = ' '.join(part for part in last.split("'"))
                        last = ''.join(gmTools.capitalize(text = part, mode = gmTools.CAPS_FIRST_ONLY) for part in last.split(' '))
                        first = ' '.join(part for part in name['firstnames'].split("-"))
                        first = ' '.join(part for part in first.split("."))
                        first = ' '.join(part for part in first.split("'"))
                        first = ''.join(gmTools.capitalize(text = part, mode = gmTools.CAPS_FIRST_ONLY) for part in first.split(' '))
                        suggestion_parts = ['GMd']
                        if target is not None:
                                suggestion_parts.append(target)
                        suggestion_parts.append(last)
                        suggestion_parts.append(first)
                        suggestion_parts.append(dob)
                        suggestion_parts.append(gender)
                        suggestion_parts.append(pk)
                        suggestion = '-'.join(suggestion_parts)
                        try:
                                import unidecode
                                suggestion = unidecode.unidecode(suggestion)
                        except ImportError:
                                _log.debug('cannot transliterate to ASCII external ID suggestion, <unidecode> module not installed')
                        suggestions.append(suggestion)
                return suggestions

  `def unlink_address(self, address=None, pk_address=None)`

    Remove an address from the patient.

    The address itself stays in the database. The address can be either cAdress or cPatientAdress.

    Expand source code

        def unlink_address(self, address=None, pk_address=None):
                """Remove an address from the patient.

                The address itself stays in the database.
                The address can be either cAdress or cPatientAdress.
                """
                if pk_address is None:
                        args = {'person': self.pk_obj, 'adr': address['pk_address']}
                else:
                        args = {'person': self.pk_obj, 'adr': pk_address}
                cmd = """
                        DELETE FROM dem.lnk_person_org_address
                        WHERE
                                dem.lnk_person_org_address.id_identity = %(person)s
                                        AND
                                dem.lnk_person_org_address.id_address = %(adr)s
                                        AND
                                NOT EXISTS(SELECT 1 FROM bill.bill WHERE fk_receiver_address = dem.lnk_person_org_address.id)
                        """
                gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])

  `def unlink_comm_channel(self, comm_channel=None)`
    Expand source code

        def unlink_comm_channel(self, comm_channel=None):
                gmDemographicRecord.delete_comm_channel (
                        pk = comm_channel['pk_lnk_identity2comm'],
                        pk_patient = self.pk_obj
                )

  `def unlink_occupation(self, occupation=None)`
    Expand source code

        def unlink_occupation(self, occupation=None):
                if occupation is None:
                        return True
                occupation = occupation.strip()
                cmd = "delete from dem.lnk_job2person where fk_identity=%(pk)s and fk_occupation in (select id from dem.occupation where _(name) = _(%(job)s))"
                rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': {'pk': self.pk_obj, 'job': occupation}}])
                return True

  `def update_external_id(self, pk_id=None, type=None, value=None, issuer=None, comment=None)`

    Edits an existing external ID.

    Creates ID type if necessary.

    Expand source code

        def update_external_id(self, pk_id=None, type=None, value=None, issuer=None, comment=None):
                """Edits an existing external ID.

                Creates ID type if necessary.
                """
                cmd = """
                        UPDATE dem.lnk_identity2ext_id SET
                                fk_origin = (SELECT dem.add_external_id_type(%(type)s, %(issuer)s)),
                                external_id = %(value)s,
                                comment = gm.nullify_empty_string(%(comment)s)
                        WHERE
                                id = %(pk)s
                """
                args = {'pk': pk_id, 'value': value, 'type': type, 'issuer': issuer, 'comment': comment}
                rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])

  ### Inherited members

  - `cBusinessDBObject`:
    - `fields_as_dict`
    - `format`
    - `get_fields`
    - `get_patient`
    - `get_updatable_fields`
    - `is_modified`
    - `patient_pk`
    - `refetch_payload`
    - `same_payload`
    - `save`
    - `save_payload`
    - `staff_id`
`class cPersonName (aPK_obj=None, row: dict = None, link_obj=None)`

  Represents business objects in the database.

  ## Rules

  - instances ARE ASSUMED TO EXIST in the database
  - PK construction (aPK_obj): DOES verify its existence on instantiation (fetching data fails)
  - Row construction (row): allowed by using a dict of pairs of field name: field value (PERFORMANCE improvement)
  - does NOT verify FK target existence
  - does NOT create new entries in the database
  - does NOT lazy-fetch fields on access

  Class scope SQL commands and variables: _cmd_fetch_payload: * must return exactly one row * WHERE clause argument values are expected in self.pk_obj (taken from init(aPK_obj)) * must return xmin of all rows that _cmds_store_payload will be updating, so views must support the xmin columns of their underlying tables

  cmds_store_payload: * one or multiple "update … set … where xmin = … and pk = …" statements which actually update the database from the data in self.payload, * the last query must refetch at least the XMIN values needed to detect concurrent updates, their field names had better be the same as in _cmd_fetch_payload, * the last query CAN return other fields which is particularly useful when those other fields are computed in the backend and may thus change upon save but will not have been set by the client code explicitely - this is only really of concern if the saved subclass is to be reused after saving rather than re-instantiated * when subclasses tend to live a while after save_payload() was called and they support computed fields (say, (some_column) you need to return all columns (see cEncounter)

  _updatable_fields: * a list of fields available for update via object['field']

  Init business object.

  Call from child classes like so:

          super().__init__(aPK_obj = aPK_obj, row = row, link_obj = link_obj)

  ## Args

  `aPK_obj`
    retrieve data from backend * a simple value the primary key WHERE condition must be a simple column * a dictionary of values the primary key WHERE condition must be a subselect consuming the dict and producing the single-value primary key
  `row`
    must hold the fields * idx: a dict mapping field names to position * data: the field values in a list (as returned by cursor.fetchone() in the DB-API) * pk_field: the name of the primary key field OR * pk_obj: a dictionary suitable for passed to cursor.execute and holding the primary key values, used for composite PKs

  ## Examples

  row = { 'data': rows[0], 'idx': idx, 'pk_field': 'pk_XXX (the PK column name)', 'pk_obj': {'pk_col1': pk_col1_val, 'pk_col2': pk_col2_val} } rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True) objects = [ cChildClass(row = {'data': r, 'idx': idx, 'pk_field': 'the PK column name'}) for r in rows ]

  Expand source code

      class cPersonName(gmBusinessDBObject.cBusinessDBObject):
              _cmd_fetch_payload = "SELECT * FROM dem.v_person_names WHERE pk_name = %s"
              _cmds_store_payload = [
                      """UPDATE dem.names SET
                              active = FALSE
                      WHERE
                              %(active_name)s IS TRUE                         -- act only when needed and only
                                      AND
                              id_identity = %(pk_identity)s           -- on names of this identity
                                      AND
                              active IS TRUE                                          -- which are active
                                      AND
                              id != %(pk_name)s                                       -- but NOT *this* name
                              """,
                      """update dem.names set
                              active = %(active_name)s,
                              preferred = %(preferred)s,
                              comment = %(comment)s
                      where
                              id = %(pk_name)s and
                              id_identity = %(pk_identity)s and       -- belt and suspenders
                              xmin = %(xmin_name)s""",
                      """select xmin as xmin_name from dem.names where id = %(pk_name)s"""
              ]
              _updatable_fields = ['active_name', 'preferred', 'comment']
              #--------------------------------------------------------
              def __setitem__(self, attribute, value):
                      if attribute == 'active_name':
                              # cannot *directly* deactivate a name, only indirectly
                              # by activating another one
                              # FIXME: should be done at DB level
                              if self._payload[self._idx['active_name']] is True:
                                      return
                      gmBusinessDBObject.cBusinessDBObject.__setitem__(self, attribute, value)
              #--------------------------------------------------------
              def _get_description(self):
                      return '%(last)s, %(title)s %(first)s%(nick)s' % {
                              'last': self._payload[self._idx['lastnames']],
                              'title': gmTools.coalesce (
                                      self._payload[self._idx['title']],
                                      map_gender2salutation(self._payload[self._idx['gender']])
                              ),
                              'first': self._payload[self._idx['firstnames']],
                              'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'", '%s')
                      }

              description = property(_get_description, lambda x:x)

  ### Ancestors

  - cBusinessDBObject

  ### Instance variables

  `var description`
    Expand source code

        def _get_description(self):
                return '%(last)s, %(title)s %(first)s%(nick)s' % {
                        'last': self._payload[self._idx['lastnames']],
                        'title': gmTools.coalesce (
                                self._payload[self._idx['title']],
                                map_gender2salutation(self._payload[self._idx['gender']])
                        ),
                        'first': self._payload[self._idx['firstnames']],
                        'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'", '%s')
                }

  ### Inherited members

  - `cBusinessDBObject`:
    - `fields_as_dict`
    - `format`
    - `get_fields`
    - `get_patient`
    - `get_updatable_fields`
    - `is_modified`
    - `patient_pk`
    - `refetch_payload`
    - `same_payload`
    - `save`
    - `save_payload`
    - `staff_id`
`class gmCurrentPatient (*args, **kargs)`

  Patient Borg to hold the currently active patient.

  There may be many instances of this but they all share state.

  The underlying dem.identity row must have .deleted set to FALSE.

  The sequence of events when changing the active patient:

          1) Registered callbacks are run.
                  Those are run synchronously. If a callback
                  returns False or throws an exception the
                  patient switch is aborted. Callback code
                  can rely on the patient still being active
                  and to not go away until it returns. It
                  is not passed any arguments and must return
                  False or True.

          2) Signal "pre_patient_unselection" is sent.
                  This does not wait for nor check results.
                  The keyword pk_identity contains the
                  PK of the person being switched away
                  from.

          3) the current patient is unset (gmNull.cNull)

          4) Signal "current_patient_unset" is sent
                  At this point resetting GUI fields to
                  empty should be done. The active patient
                  is not there anymore.

                  This does not wait for nor check results.

          5) The current patient is set to the new value.
                  The new patient can also remain gmNull.cNull
                  in case the calling code explicitely unset
                  the current patient.

          6) Signal "post_patient_selection" is sent.
                  Code listening to this signal can
                  assume that the new patient is
                  already active.

  Change or get currently active patient.

  patient: * None: get currently active patient * -1: unset currently active patient * cPatient instance: set active patient if possible

  Expand source code

      class gmCurrentPatient(gmBorg.cBorg):
              """Patient Borg to hold the currently active patient.

              There may be many instances of this but they all share state.

              The underlying dem.identity row must have .deleted set to FALSE.

              The sequence of events when changing the active patient:

                      1) Registered callbacks are run.
                              Those are run synchronously. If a callback
                              returns False or throws an exception the
                              patient switch is aborted. Callback code
                              can rely on the patient still being active
                              and to not go away until it returns. It
                              is not passed any arguments and must return
                              False or True.

                      2) Signal "pre_patient_unselection" is sent.
                              This does not wait for nor check results.
                              The keyword pk_identity contains the
                              PK of the person being switched away
                              from.

                      3) the current patient is unset (gmNull.cNull)

                      4) Signal "current_patient_unset" is sent
                              At this point resetting GUI fields to
                              empty should be done. The active patient
                              is not there anymore.

                              This does not wait for nor check results.

                      5) The current patient is set to the new value.
                              The new patient can also remain gmNull.cNull
                              in case the calling code explicitely unset
                              the current patient.

                      6) Signal "post_patient_selection" is sent.
                              Code listening to this signal can
                              assume that the new patient is
                              already active.
              """
              def __init__(self, patient=None, forced_reload=False):
                      """Change or get currently active patient.

                      patient:
                      * None: get currently active patient
                      * -1: unset currently active patient
                      * cPatient instance: set active patient if possible
                      """
                      # make sure we do have a patient pointer
                      try:
                              self.patient
                      except AttributeError:
                              self.patient = gmNull.cNull()
                              self.__register_interests()
                              # set initial lock state,
                              # this lock protects against activating another patient
                              # when we are controlled from a remote application
                              self.__lock_depth = 0
                              # initialize callback state
                              self.__callbacks_before_switching_away_from_patient = []

                      # user wants copy of current patient
                      if patient is None:
                              return None

                      # do nothing if patient is locked
                      if self.locked:
                              _log.error('patient [%s] is locked, cannot change to [%s]' % (self.patient['pk_identity'], patient))
                              return None

                      # user wants to explicitly unset current patient
                      if patient == -1:
                              _log.debug('explicitly unsetting current patient')
                              if not self.__run_callbacks_before_switching_away_from_patient():
                                      _log.error('not unsetting current patient, at least one pre-change callback failed')
                                      return None
                              self.__send_pre_unselection_notification()
                              self.patient.cleanup()
                              self.patient = gmNull.cNull()
                              self.__send_unselection_notification()
                              # give it some time
                              time.sleep(0.5)
                              self.__send_selection_notification()
                              return None

                      # must be cPatient instance, then
                      if not isinstance(patient, cPatient):
                              _log.error('cannot set active patient to [%s], must be either None, -1 or cPatient instance' % str(patient))
                              raise TypeError('gmPerson.gmCurrentPatient.__init__(): <patient> must be None, -1 or cPatient instance but is: %s' % str(patient))

                      # same ID, no change needed
                      if (self.patient['pk_identity'] == patient['pk_identity']) and not forced_reload:
                              return None

                      if patient['is_deleted']:
                              _log.error('cannot set active patient to disabled dem.identity row: %s', patient)
                              raise ValueError('gmPerson.gmCurrentPatient.__init__(): <patient> is disabled: %s' % patient)

                      # user wants different patient
                      _log.info('patient change [%s] -> [%s] requested', self.patient['pk_identity'], patient['pk_identity'])

                      if not self.__run_callbacks_before_switching_away_from_patient():
                              _log.error('not changing current patient, at least one pre-change callback failed')
                              return None

                      # everything seems swell
                      self.__send_pre_unselection_notification()
                      self.patient.cleanup()
                      self.patient = gmNull.cNull()
                      self.__send_unselection_notification()
                      # give it some time
                      time.sleep(0.5)
                      self.patient = patient
                      # for good measure ...
                      # however, actually we want to get rid of that
                      self.patient.emr
                      self.__send_selection_notification()

                      return None

              #--------------------------------------------------------
              def __register_interests(self):
                      gmDispatcher.connect(signal = 'gm_table_mod', receiver = self._on_database_signal)

              #--------------------------------------------------------
              def _on_database_signal(self, **kwds):
                      # we don't have a patient: don't process signals
                      if isinstance(self.patient, gmNull.cNull):
                              return True

                      # we only care about identity and name changes
                      if kwds['table'] not in ['dem.identity', 'dem.names']:
                              return True

                      # signal is not about our patient: ignore signal
                      if int(kwds['pk_identity']) != self.patient.ID:
                              return True

                      if kwds['table'] == 'dem.identity':
                              # we don't care about newly INSERTed or DELETEd patients
                              if kwds['operation'] != 'UPDATE':
                                      return True

                      self.patient.refetch_payload()
                      return True

              #--------------------------------------------------------
              # external API
              #--------------------------------------------------------
              def register_before_switching_from_patient_callback(self, callback=None):
                      # callbacks are run synchronously before
                      # switching *away* from the current patient,
                      # if a callback returns false the current
                      # patient will not be switched away from,
                      # callbacks will not be passed any arguments
                      if not callable(callback):
                              raise TypeError('callback [%s] not callable' % callback)

                      self.__callbacks_before_switching_away_from_patient.append(callback)

              #--------------------------------------------------------
              def _get_connected(self):
                      return (not isinstance(self.patient, gmNull.cNull))

              connected = property(_get_connected, lambda x:x)

              #--------------------------------------------------------
              def _get_locked(self):
                      return (self.__lock_depth > 0)

              def _set_locked(self, locked):
                      if locked:
                              self.__lock_depth = self.__lock_depth + 1
                              gmDispatcher.send(signal = 'patient_locked', sender = self.__class__.__name__)
                      else:
                              if self.__lock_depth == 0:
                                      _log.error('lock/unlock imbalance, tried to refcount lock depth below 0')
                                      return
                              else:
                                      self.__lock_depth = self.__lock_depth - 1
                              gmDispatcher.send(signal = 'patient_unlocked', sender = self.__class__.__name__)

              locked = property(_get_locked, _set_locked)

              #--------------------------------------------------------
              def force_unlock(self):
                      _log.info('forced patient unlock at lock depth [%s]' % self.__lock_depth)
                      self.__lock_depth = 0
                      gmDispatcher.send(signal = 'patient_unlocked', sender = self.__class__.__name__)

              #--------------------------------------------------------
              # patient change handling
              #--------------------------------------------------------
              def __run_callbacks_before_switching_away_from_patient(self):
                      if isinstance(self.patient, gmNull.cNull):
                              return True

                      for call_back in self.__callbacks_before_switching_away_from_patient:
                              try:
                                      successful = call_back()
                              except Exception:
                                      _log.exception('callback [%s] failed', call_back)
                                      print("*** pre-change callback failed ***")
                                      print(type(call_back))
                                      print(call_back)
                                      return False

                              if not successful:
                                      _log.error('callback [%s] returned False', call_back)
                                      return False

                      return True

              #--------------------------------------------------------
              def __send_pre_unselection_notification(self):
                      """Sends signal when current patient is about to be unset.

                      This does NOT wait for signal handlers to complete.
                      """
                      kwargs = {
                              'signal': 'pre_patient_unselection',
                              'sender': self.__class__.__name__,
                              'pk_identity': self.patient['pk_identity']
                      }
                      gmDispatcher.send(**kwargs)

              #--------------------------------------------------------
              def __send_unselection_notification(self):
                      """Sends signal when the previously active patient has
                         been unset during a change of active patient.

                      This is the time to initialize GUI fields to empty values.

                      This does NOT wait for signal handlers to complete.
                      """
                      kwargs = {
                              'signal': 'current_patient_unset',
                              'sender': self.__class__.__name__
                      }
                      gmDispatcher.send(**kwargs)

              #--------------------------------------------------------
              def __send_selection_notification(self):
                      """Sends signal when another patient has actually been made active."""
                      kwargs = {
                              'signal': 'post_patient_selection',
                              'sender': self.__class__.__name__,
                              'pk_identity': self.patient['pk_identity'],
                              'current_patient': self
                      }
                      gmDispatcher.send(**kwargs)

              #--------------------------------------------------------
              # __getattr__ handling
              #--------------------------------------------------------
              def __getattr__(self, attribute):
                      # override __getattr__ here, not __getattribute__ because
                      # the former is used _after_ ordinary attribute lookup
                      # failed while the latter is applied _before_ ordinary
                      # lookup (and is easy to drive into infinite recursion),
                      # this is also why subsequent access to self.patient
                      # simply returns the .patient member value :-)
                      if attribute == 'patient':
                              raise AttributeError
                      if isinstance(self.patient, gmNull.cNull):
                              _log.error("[%s]: cannot getattr(%s, '%s'), patient attribute not connected to a patient", self, self.patient, attribute)
                              raise AttributeError("[%s]: cannot getattr(%s, '%s'), patient attribute not connected to a patient" % (self, self.patient, attribute))
                      return getattr(self.patient, attribute)

              #--------------------------------------------------------
              # __get/setitem__ handling
              #--------------------------------------------------------
              def __getitem__(self, attribute = None):
                      """Return any attribute if known how to retrieve it by proxy.
                      """
                      return self.patient[attribute]

              #--------------------------------------------------------
              def __setitem__(self, attribute, value):
                      self.patient[attribute] = value

  ### Ancestors

  - cBorg

  ### Instance variables

  `var connected`
    Expand source code

        def _get_connected(self):
                return (not isinstance(self.patient, gmNull.cNull))

  `var locked`
    Expand source code

        def _get_locked(self):
                return (self.__lock_depth > 0)

  ### Methods

  `def force_unlock(self)`
    Expand source code

        def force_unlock(self):
                _log.info('forced patient unlock at lock depth [%s]' % self.__lock_depth)
                self.__lock_depth = 0
                gmDispatcher.send(signal = 'patient_unlocked', sender = self.__class__.__name__)

  `def register_before_switching_from_patient_callback(self, callback=None)`
    Expand source code

        def register_before_switching_from_patient_callback(self, callback=None):
                # callbacks are run synchronously before
                # switching *away* from the current patient,
                # if a callback returns false the current
                # patient will not be switched away from,
                # callbacks will not be passed any arguments
                if not callable(callback):
                        raise TypeError('callback [%s] not callable' % callback)

                self.__callbacks_before_switching_away_from_patient.append(callback)