Post Processing of (Half-)Hourly Eddy-Covariance Measurements
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Documentation for package ‘REddyProc’ version 1.3.3
Help Pages
| REddyProc-package | Post Processing of (Half-)Hourly Eddy-Covariance Measurements |
-- B --
| BerkeleyJulianDateToPOSIXct | BerkeleyJulianDateToPOSIXct |
-- D --
| DEGebExample | Eddy covariance data from Gebesee crop site, Germany |
-- E --
| estimate_vpd_from_dew | Estimate VPD from assuming dewpoint at daily minimum temperature |
| Example_DETha98 | Eddy covariance data from Tharandt, Germany |
| extract_FN15 | extract processing results with columns corresponding to Fluxnet15 release |
-- F --
| fCalcAVPfromVMFandPress | fCalcAVPfromVMFandPress |
| fCalcETfromLE | fCalcETfromLE |
| fCalcExtRadiation | fCalcExtRadiation |
| fCalcPotRadiation | fCalcPotRadiation |
| fCalcRHfromAVPandTair | fCalcRHfromAVPandTair |
| fCalcSVPfromTair | fCalcSVPfromTair |
| fCalcVPDfromRHandTair | fCalcVPDfromRHandTair |
| fCheckHHTimeSeries | fCheckHHTimeSeries |
| fConvertCtoK | fConvertCtoK |
| fConvertGlobalToVisible | fConvertGlobalToVisible |
| fConvertKtoC | fConvertKtoC |
| fConvertTimeToPosix | fConvertTimeToPosix |
| fConvertVisibleWm2toPhotons | fConvertVisibleWm2toPhotons |
| filterLongRuns | filterLongRuns |
| filterLongRunsInVector | filterLongRunsInVector |
| filter_entire_days | filter entire days |
| filter_years_eop | filter years eop |
| fKeepColumnAttributes | fKeepColumnAttributes |
| fLloydTaylor | Temperature dependence of soil respiration |
| fLoadAmeriflux22 | Read basic variables from Ameriflux standard (as of 2022) files |
| fLoadEuroFlux16 | fLoadEuroFlux16 |
| fLoadFluxnet15 | Read a file in the format of Fluxnet 2015 release |
| fLoadTXTIntoDataframe | Load text file with one header and one unit row into data frame |
| fSplitDateTime | fSplitDateTime |
| fWriteDataframeToFile | fWriteDataframeToFile |
| fWriteFrench23 | fWriteFrench23 |
-- G --
| getAmerifluxToBGC05VariableNameMapping | getAmerifluxToBGC05VariableNameMapping |
| getBGC05ToAmerifluxVariableNameMapping | getBGC05ToAmerifluxVariableNameMapping |
| getExamplePath | getExamplePath |
| getFilledExampleDETha98Data | getFilledExampleDETha98Data |
| getREddyProcExampleDir | getREddyProcExampleDir |
| getTZone | getTZone |
| get_day_boundaries | get day boundaries |
| get_timestep_hours | Get the timestep in fractional hours |
-- H --
| help_DateTimes | help DateTimes |
| help_export | help export |
-- L --
| LightResponseCurveFitter | LightResponseCurveFitter |
| LightResponseCurveFitter-class | Class '"LightResponseCurveFitter"' |
| LightResponseCurveFitter_computeCost | LightResponseCurveFitter computeCost |
| LightResponseCurveFitter_computeLRCGradient | LightResponseCurveFitter computeLRCGradient |
| LightResponseCurveFitter_fitLRC | LightResponseCurveFitter fitLRC |
| LightResponseCurveFitter_getOptimizedParameterPositions | LightResponseCurveFitter getOptimizedParameterPositions |
| LightResponseCurveFitter_getParameterInitials | LightResponseCurveFitter getParameterInitials |
| LightResponseCurveFitter_getParameterNames | LightResponseCurveFitter getParameterNames |
| LightResponseCurveFitter_getPriorLocation | LightResponseCurveFitter getPriorLocation |
| LightResponseCurveFitter_getPriorScale | LightResponseCurveFitter getPriorScale |
| LightResponseCurveFitter_isParameterInBounds | LightResponseCurveFitter isParameterInBounds |
| LightResponseCurveFitter_optimLRC | LightResponseCurveFitter optimLRC |
| LightResponseCurveFitter_optimLRCBounds | LightResponseCurveFitter optimLRCBounds |
| LightResponseCurveFitter_optimLRCOnAdjustedPrior | LightResponseCurveFitter optimLRCOnAdjustedPrior |
| LightResponseCurveFitter_predictGPP | LightResponseCurveFitter predictGPP |
| LightResponseCurveFitter_predictLRC | LightResponseCurveFitter predictLRC |
| LogisticSigmoidLRCFitter | LogisticSigmoidLRCFitter |
| LogisticSigmoidLRCFitter-class | Class '"LogisticSigmoidLRCFitter"' |
| LogisticSigmoidLRCFitter_predictGPP | LogisticSigmoidLRCFitter predictGPP |
-- N --
| NonrectangularLRCFitter | NonrectangularLRCFitter |
| NonrectangularLRCFitter-class | Class '"NonrectangularLRCFitter"' |
| NonrectangularLRCFitter_getParameterNames | NonrectangularLRCFitter getParameterNames |
| NonrectangularLRCFitter_predictGPP | NonrectangularLRCFitter predictGPP |
-- P --
| partGLControl | partGLControl |
| partGLControlLasslopCompatible | partGLControlLasslopCompatible |
| partGLExtractStandardData | partGLExtractStandardData |
| partitionNEEGL | partitionNEEGL |
| POSIXctToBerkeleyJulianDate | POSIXctToBerkeleyJulianDate |
-- R --
| read_from_ameriflux22 | Extract basic variables from Ameriflux standard (as of 2022) data.frames |
| read_from_fluxnet15 | extract REddyProc input columns from data.frame in Fluxnet15 format |
| RectangularLRCFitter | RectangularLRCFitter |
| RectangularLRCFitter-class | Class '"RectangularLRCFitter"' |
| RectangularLRCFitterCVersion | RectangularLRCFitterCVersion |
| RectangularLRCFitterCVersion-class | Class '"RectangularLRCFitterCVersion"' |
| RectangularLRCFitter_predictGPP | RectangularLRCFitter predictGPP |
| REddyProc | Post Processing of (Half-)Hourly Eddy-Covariance Measurements |
| REddyProc_defaultunits | Get the default units for given variables |
| renameVariablesInDataframe | renameVariablesInDataframe |
| RHLightResponseCostC | RHLightResponseCostC |
-- S --
| sDATA | globalDummyVars |
| sEddyProc | sEddyProc |
| sEddyProc-class | Class '"sEddyProc"' |
| sEddyProc_initialize | sEddyProc initialize |
| sEddyProc_sApplyUStarScen | sEddyProc sApplyUStarScen |
| sEddyProc_sCalcPotRadiation | sEddyProc sCalcPotRadiation |
| sEddyProc_sEstimateUstarScenarios | sEddyProc sEstimateUstarScenarios |
| sEddyProc_sEstUstarThold | sEddyProc$sEstUstarThreshold - Estimating ustar threshold |
| sEddyProc_sEstUstarThreshold | sEddyProc$sEstUstarThreshold - Estimating ustar threshold |
| sEddyProc_sEstUstarThresholdDistribution | sEddyProc sEstUstarThresholdDistribution |
| sEddyProc_sExportData | sEddyProc sExportData |
| sEddyProc_sExportResults | sEddyProc sExportResults |
| sEddyProc_sFillInit | sEddyProc$sFillInit - Initialize gap filling |
| sEddyProc_sFillLUT | sEddyProc sFillLUT |
| sEddyProc_sFillMDC | sEddyProc sFillMDC |
| sEddyProc_sFillVPDFromDew | Estimate VPD from daily minimum temperature |
| sEddyProc_sGetData | sEddyProc sGetData |
| sEddyProc_sGetEstimatedUstarThresholdDistribution | sEddyProc sGetEstimatedUstarThresholdDistribution |
| sEddyProc_sGetUstarScenarios | sEddyProc sGetUstarScenarios |
| sEddyProc_sGetUstarSuffixes | sEddyProc sGetUstarSuffixes |
| sEddyProc_sGLFluxPartition | sEddyProc sGLFluxPartition |
| sEddyProc_sGLFluxPartitionUStarScens | sEddyProc sGLFluxPartitionUStarScens |
| sEddyProc_sMDSGapFill | sEddyProc sMDSGapFill |
| sEddyProc_sMDSGapFillAfterUstar | sEddyProc sMDSGapFillAfterUstar |
| sEddyProc_sMDSGapFillAfterUStarDistr | sEddyProc sMDSGapFillAfterUStarDistr |
| sEddyProc_sMDSGapFillUStarScens | sEddyProc sMDSGapFillUStarScens |
| sEddyProc_sMRFluxPartition | sEddyProc sMRFluxPartition |
| sEddyProc_sMRFluxPartitionUStarScens | sEddyProc sMRFluxPartitionUStarScens |
| sEddyProc_sPlotDailySums | sEddyProc$sPlotDailySums - Image with daily sums of each year |
| sEddyProc_sPlotDailySumsY | sEddyProc sPlotDailySumsY |
| sEddyProc_sPlotDiurnalCycle | sEddyProc sPlotDiurnalCycle |
| sEddyProc_sPlotDiurnalCycleM | sEddyProc sPlotDiurnalCycleM |
| sEddyProc_sPlotFingerprint | sEddyProc sPlotFingerprint |
| sEddyProc_sPlotFingerprintY | sEddyProc sPlotFingerprintY |
| sEddyProc_sPlotHHFluxes | sEddyProc sPlotHHFluxes |
| sEddyProc_sPlotHHFluxesY | sEddyProc sPlotHHFluxesY |
| sEddyProc_sPlotNEEVersusUStarForSeason | sEddyProc sPlotNEEVersusUStarForSeason |
| sEddyProc_sSetLocationInfo | sEddyProc sSetLocationInfo |
| sEddyProc_sSetUstarScenarios | sEddyProc sSetUstarScenarios |
| sEddyProc_sSetUStarSeasons | sEddyProc sSetUStarSeasons |
| sEddyProc_sTKFluxPartition | sEddyProc sTKFluxPartition |
| sEddyProc_sTKFluxPartitionUStarScens | sEddyProc sTKFluxPartitionUStarScens |
| sEddyProc_update_ustarthreshold_columns | Add columns reporting the uStar threshold for each scenario to sDATA |
| sEddyProc_useAnnualUStarThresholds | sEddyProc useAnnualUStarThresholds |
| sEddyProc_useSeaonsalUStarThresholds | sEddyProc useSeaonsalUStarThresholds |
| sID | globalDummyVars |
| sINFO | globalDummyVars |
| sLOCATION | globalDummyVars |
| sPlotFingerprint | sEddyProc sPlotFingerprint |
| sTEMP | globalDummyVars |
| sUSTAR | globalDummyVars |
-- U --
| usControlUstarEst | usControlUstarEst |
| usControlUstarSubsetting | usControlUstarSubsetting |
| usCreateSeasonFactorMonth | usCreateSeasonFactorMonth |
| usCreateSeasonFactorMonthWithinYear | usCreateSeasonFactorMonthWithinYear |
| usCreateSeasonFactorYday | usCreateSeasonFactorYday |
| usCreateSeasonFactorYdayYear | usCreateSeasonFactorYdayYear |
| usEstUstarThreshold | usEstUstarThreshold - Estimating ustar threshold |
| usEstUstarThresholdSingleFw1Binned | usEstUstarThresholdSingleFw1Binned |
| usEstUstarThresholdSingleFw2Binned | usEstUstarThresholdSingleFw2Binned |
| usGetAnnualSeasonUStarMap | usGetAnnualSeasonUStarMap |
| usGetSeasonalSeasonUStarMap | usGetSeasonalSeasonUStarMap |
| usGetYearOfSeason | usGetYearOfSeason |
-- misc --
| _REddyProc_RHLightResponseCostC | RHLightResponseCostC |