Visualizing Topological Loops and Voids

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Documentation for package ‘RPointCloud’ version 0.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

AML10.node287	CyTOF Data
AML10.node287.rips	CyTOF Data
angleMeans	The 'LoopCircos' Class
Arip	CyTOF Data
clinical	Chronic Lymphocytic Leukemia Clinical Data
CLL-data	Chronic Lymphocytic Leukemia Clinical Data
cutoff	The 'EBexpo' Class
Cycle	'Cycle' Objects For Visualizing Topological Data Analysis Results
Cycle-class	'Cycle' Objects For Visualizing Topological Data Analysis Results
cycleSupport	'Cycle' Objects For Visualizing Topological Data Analysis Results
cytof-data	CyTOF Data
daisydist	Chronic Lymphocytic Leukemia Clinical Data
disentangle	Disentangling Rips Diagrams From Their Initial Data Coordinates
EBexpo	The 'EBexpo' Class
EBexpo-class	The 'EBexpo' Class
ExpoFit	The 'ExpoFit' Class
ExpoFit-class	The 'ExpoFit' Class
Feature	'Feature' Objects For Visualizing Topological Data Anal;ysis Results
Feature-class	'Feature' Objects For Visualizing Topological Data Anal;ysis Results
getCycle	'Cycle' Objects For Visualizing Topological Data Analysis Results
hist-method	The 'EBexpo' Class
image-method	The 'LoopCircos' Class
image-method	'Projection' Objects For Visualizing 3D Topological Data Analysis Results in 2D
image-method	'LoopFeature' Objects For Visualizing Features That Define Loops
LDPC	Local Dimension of Point Clouds
lines-method	'Cycle' Objects For Visualizing Topological Data Analysis Results
LoopCircos	The 'LoopCircos' Class
LoopCircos-class	The 'LoopCircos' Class
LoopFeature	'LoopFeature' Objects For Visualizing Features That Define Loops
LoopFeature-class	'LoopFeature' Objects For Visualizing Features That Define Loops
plot-method	'Cycle' Objects For Visualizing Topological Data Analysis Results
plot-method	'Feature' Objects For Visualizing Topological Data Anal;ysis Results
plot-method	The 'ExpoFit' Class
plot-method	The 'EBexpo' Class
plot-method	'Projection' Objects For Visualizing 3D Topological Data Analysis Results in 2D
plot-method	'LoopFeature' Objects For Visualizing Features That Define Loops
points-method	'Feature' Objects For Visualizing Topological Data Anal;ysis Results
Projection	'Projection' Objects For Visualizing 3D Topological Data Analysis Results in 2D
Projection-class	'Projection' Objects For Visualizing 3D Topological Data Analysis Results in 2D
rip	Single Cell Data on T Regulatory (Treg) Cells
ripdiag	Chronic Lymphocytic Leukemia Clinical Data
tailHisto	Function to extract the right tail of a histogram for display purposes.
takens	Local Dimension of Point Clouds
tmat	Single Cell Data on T Regulatory (Treg) Cells
treg	Single Cell Data on T Regulatory (Treg) Cells
treg-data	Single Cell Data on T Regulatory (Treg) Cells
voidFeature	3D Scatter Plots of Cycles and Features
voidPlot	3D Scatter Plots of Cycles and Features
voids	3D Scatter Plots of Cycles and Features