Package: pedmod
Type: Package
Title: Pedigree Models
Version: 0.2.4
Authors@R: c(
  person("Benjamin", "Christoffersen", 
         email = "boennecd@gmail.com", 
         role = c("cre", "aut"), 
         comment = c(ORCID = "0000-0002-7182-1346")), 
  person("Alan", "Genz", 
         role = c("cph")),
  person("Frank", "Bretz", 
         role = c("cph")),
  person("Bjoern", "Bornkamp", 
         role = c("cph")), 
  person("Torsten", "Hothorn", 
         role = c("cph")),
  person("Christophe", "Dutang", 
         role = c("cph")),
  person("Diethelm", "Wuertz", 
         role = c("cph")),
  person("R-core", email = "R-core@R-project.org",
         role = "cph"),
  person("Leo", "Belzile", 
         role = "cph"),
  person("Zdravko", "Botev", 
         role = "cph"))
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Description: Provides functions to estimate mixed probit models using, for 
    instance, pedigree data like in <doi:10.1002/sim.1603>. The models are also 
    commonly called liability threshold models. The approximation is 
    based on direct log marginal likelihood approximations like the randomized 
    Quasi-Monte Carlo suggested by <doi:10.1198/106186002394> with a similar 
    procedure to approximate the derivatives. The minimax tilting method 
    suggested by <doi:10.1111/rssb.12162> is also supported. Graph-based methods 
    are also provided that can be used to simplify pedigrees.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.0
URL: https://github.com/boennecd/pedmod
BugReports: https://github.com/boennecd/pedmod/issues
LinkingTo: Rcpp, RcppArmadillo, BH, testthat, psqn
Imports: Rcpp, alabama
Suggests: testthat, mvtnorm, xml2, knitr, rmarkdown, R.rsp, abind,
        kinship2, igraph, TruncatedNormal, numDeriv
Depends: R (>= 3.5.0)
VignetteBuilder: R.rsp
SystemRequirements: C++17
NeedsCompilation: yes
Packaged: 2022-09-11 09:37:02 UTC; boennecd
Author: Benjamin Christoffersen [cre, aut]
    (<https://orcid.org/0000-0002-7182-1346>),
  Alan Genz [cph],
  Frank Bretz [cph],
  Bjoern Bornkamp [cph],
  Torsten Hothorn [cph],
  Christophe Dutang [cph],
  Diethelm Wuertz [cph],
  R-core [cph],
  Leo Belzile [cph],
  Zdravko Botev [cph]
Repository: CRAN
Date/Publication: 2022-09-11 10:00:02 UTC
Built: R 4.3.0; aarch64-apple-darwin20; 2023-04-07 11:43:28 UTC; unix
Archs: pedmod.so.dSYM
