Diagnostic Index Expectation Maximisation in R
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Documentation for package ‘diemr’ version 1.4.2
Help Pages
| brenthis | Dataset of Butterfly Genotypes |
| CheckDiemFormat | diem input file checker |
| diem | Diagnostic Index Expectation Maximisation |
| emPolarise | Polarises a marker |
| importPolarized | Imports genomic data polarized according to the specification |
| ModelOfDiagnostic | Model of Diagnostic Marker Based on All Individual State Counts |
| myotis | Dataset of Modified Genotypes of Bats |
| pHetErrOnStateCount | Hybrid index, heterozygosity, error rate |
| plotDeFinetti | Plot the De Finetti Diagram for Polarized Genotypes |
| plotMarkerAxis | Add a Marker Axis with Chromosome Names to a Plot of Polarized Genotypes |
| plotPolarized | Plot Polarized Genotypes |
| rank2map | Convert SNP Ranks To Windows Corresponding to Mapping Distance |
| smoothPolarizedGenotypes | Smooth Polarized Genotype States |
| sStateCount | Count states in a vector |
| testdata | Dataset of Fish Genotypes |
| truncatedLaplace | Truncated Laplace distribution to 95% of area under the curve, weights scaled to 10/19 |
| unbiasedWeightedStateChoice | Selects weighted mode of the genomic state |
| vcf2diem | Convert vcf files to diem format |