Processing Pipeline for 'SamBada' from Pre- To Post-Processing


[Up] [Top]

Documentation for package ‘R.SamBada’ version 0.1.3

Help Pages

R.SamBada-package R.SamBada: A package for running samBada within R with pipeline from pre to post-processing
createEnv Create env file from raster file(s) and/or global database present in the raster r package
downloadSambada Download samBada
plotManhattan Manhattan plot
plotMap Plotting of maps
plotResultInteractive Interactive plotting of results
prepareEnv Prepare environmental input
prepareGeno Prepare genomic input
prepareOutput Prepare output (useful for all postprocessing analysis)
sambadaParallel Run sambada on parallel cores
setLocation Set the location of samples through a local web-application with interactive map