# Markov Models for Health Economic Evaluations

## Documentation for package ‘heemod’ version 1.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

A B C D E G J L M N O P R S T U W

## -- A --

add_hazards | Add Hazards
add_hazards_ | Add Hazards
apply_af | Apply an Acceleration Factor
apply_hr | Apply a Hazard Ratio
apply_or | Apply an Odds Ratio
apply_shift | Apply a time shift to a survival distribution

## -- B --

beta | Probability Density Functions for Probabilistic Uncertainty Analysis
binomial | Probability Density Functions for Probabilistic Uncertainty Analysis

## -- C --

calibrate_model | Calibrate Model Parameters
close_cluster | Run 'heemod' on a Cluster
cluster | Run 'heemod' on a Cluster
combine_probs | Combine Probabilities
compute_surv | Evaluate Survival Distributions
construct_part_surv_tib | construct a survival object from tabular specification

## -- D --

define_calibration_fn | Define Calibration Function
define_correlation | Define a Correlation Structure for Probabilistic Uncertainty Analysis
define_correlation_ | Define a Correlation Structure for Probabilistic Uncertainty Analysis
define_distribution | Probability Density Functions for Probabilistic Uncertainty Analysis
define_dsa | Define a Sensitivity Analysis
define_dsa_ | Define a Sensitivity Analysis
define_inflow | Define Inflow for a BIA
define_inflow_ | Define Inflow for a BIA
define_init | Define Initial Counts
define_init_ | Define Initial Counts
define_parameters | Define Markov Model Parameters
define_parameters_ | Define Markov Model Parameters
define_part_surv | Define Partitioned Survival
define_part_surv_ | Define Partitioned Survival
define_psa | Define Parameters Distribution for Probabilistic Analysis
define_psa_ | Define Parameters Distribution for Probabilistic Analysis
define_starting_values | Define Starting State Values
define_starting_values_ | Define Starting State Values
define_state | Define a Markov Model State
define_state_ | Define a Markov Model State
define_strategy | Define a Markov Model
define_strategy_ | Define a Markov Model
define_surv_dist | Define a Survival Distribution
define_surv_fit | Define a Fitted Survival Model
define_surv_spline | Define a Restricted Cubic Spline Survival Distribution
define_surv_table | Define a survival distribution based on explicit survival probabilities
define_surv_table.character | Define a survival distribution based on explicit survival probabilities
define_surv_table.data.frame | Define a survival distribution based on explicit survival probabilities
define_transition | Define Transition Matrix for Markov Model
define_transition_ | Define Transition Matrix for Markov Model
dispatch_strategy | Dispatch Values According to Strategy
distributions | Probability Density Functions for Probabilistic Uncertainty Analysis

## -- E --

export_savi | Export PSA Results for SAVI

## -- G --

gamma | Probability Density Functions for Probabilistic Uncertainty Analysis
get_counts | Get State Membership Counts
get_counts.combined_model | Get State Membership Counts
get_counts.eval_strategy | Get State Membership Counts
get_counts.list | Get State Membership Counts
get_counts.run_model | Get State Membership Counts
get_counts.updated_model | Get State Membership Counts
get_values | Get Strategy Values
get_values.combined_model | Get Strategy Values
get_values.eval_strategy | Get Strategy Values
get_values.list | Get Strategy Values
get_values.run_model | Get Strategy Values
get_values.updated_model | Get Strategy Values
get_who_mr | Use WHO Mortality Rate

## -- J --

join | Project Beyond a Survival Distribution with Another
join_ | Project Beyond a Survival Distribution with Another

## -- L --

load_surv_models | Load a set of survival fits
logitnormal | Probability Density Functions for Probabilistic Uncertainty Analysis
lognormal | Probability Density Functions for Probabilistic Uncertainty Analysis
look_up | Look Up Values in a Data Frame

## -- M --

mix | Mix Two or More Survival Distributions
mix_ | Mix Two or More Survival Distributions
modify | Modify Object
modify.state | Define a Markov Model State
modify.uneval_matrix | Define Transition Matrix for Markov Model
modify.uneval_parameters | Define Markov Model Parameters
multinomial | Probability Density Functions for Probabilistic Uncertainty Analysis

## -- N --

normal | Probability Density Functions for Probabilistic Uncertainty Analysis

## -- O --

or_to_prob | Convenience Functions to Compute Probabilities

## -- P --

part_survs_from_surv_inputs | Convert saved fits to partitioned survival objects
plot.dsa | Plot Sensitivity Analysis
plot.psa | Plot Results of Probabilistic Analysis
plot.run_model | Plot Results of a Markov Model
plot.surv_object | Plot general survival models
plot.uneval_matrix | Define Transition Matrix for Markov Model
plot.updated_model | Run Model on New Data
poisson | Probability Density Functions for Probabilistic Uncertainty Analysis
probability | Convenience Functions to Compute Probabilities
prob_to_prob | Convenience Functions to Compute Probabilities

## -- R --

rate_to_prob | Convenience Functions to Compute Probabilities
reindent_transition | Reindent Transition Matrix
rescale_discount_rate | Rescale Discount Rate
rescale_prob | Convenience Functions to Compute Probabilities
rr_to_prob | Convenience Functions to Compute Probabilities
run_bcea | Use the BCEA package
run_dsa | Run Sensitivity Analysis
run_model | Run Markov Model
run_model_ | Run Markov Model
run_model_tabular | Run Analyses From Files
run_psa | Run Probabilistic Uncertainty Analysis

## -- S --

set_covariates | Set Covariates of a Survival Distribution
set_covariates_ | Set Covariates of a Survival Distribution
status_cluster | Run 'heemod' on a Cluster
summary.run_model | Summarise Markov Model Results
summary.surv_shift | Summarize surv_shift objects

## -- T --

triangle | Probability Density Functions for Probabilistic Uncertainty Analysis

## -- U --

update.run_model | Run Model on New Data
update_model | Run Model on New Data
use_cluster | Run 'heemod' on a Cluster
use_distribution | Probability Density Functions for Probabilistic Uncertainty Analysis

## -- W --

who_mortality | Use WHO Mortality Rate