0f820b4ba91444042df20515e335f2f0 *DESCRIPTION
703a65f4dec7562a33175c140bd97936 *LICENSE
109ae992724a79fc818e06a328a12654 *NAMESPACE
70778f00d0087351c83a3672226cd6ab *NEWS.md
39f7b70084e865e70e1cf52109915283 *R/00-setup_data.R
16fad8cf93993f86c7223794b524e907 *R/01-qc.R
03f70a7aacf4d961df2fba0e8ba4b1d0 *R/02-gimap_filter.R
99c7c4d06d54b55f500077d0221158fc *R/03-annotate.R
502c7fb727047dec694b5a479ca951a7 *R/04-normalize.R
b16331ce557282af37d80bcbf92dab52 *R/05-calculate_gi.R
1ae33fc5cdcbac888c6964ab66b7fd5d *R/plots-gi.R
6c93c4eeb94204c457750199d6cb23a3 *R/plots-norm.R
93eb9eb0eb78ac8786859cb13dc77c0a *R/plots-qc.R
a03ca9bd3d4c29b1c8695ed105ebc54c *R/utils.R
35b9a48d138c423d3117813a2ec94249 *README.md
a64062e56421adc68894e16fbff74427 *build/vignette.rds
63e508a87fe8a6032b1b049e27066511 *inst/CITATION
2ab395e8ef85904280e0c11ba4b2a09f *inst/doc/quick-start.R
089c35a025e0e13dde178beba3ee6d0e *inst/doc/quick-start.Rmd
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9b0e8ba3bab76e4b433e08c64307e1d5 *inst/doc/timepoint-example.Rmd
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07bfe993f73089ff60803d90c6b7ccc8 *inst/doc/treatment_example.R
77d5474de8ad243e78dd73dc2151be23 *inst/doc/treatment_example.Rmd
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9e25401fd1a0b0aac0115efba2565bf5 *inst/example_qc_report.html
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57a844fd64959ccf7112b119730dad91 *inst/extdata/creds/figshare_creds.rds
33bf3105ea36a8650b28913310f2913b *inst/extdata/creds/figshare_encrypt.rds
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072f91a3af152cc0983787e823ef6ae3 *inst/extdata/gimapQCTemplate.Rmd
7842dbf07f9edca0b78b731bf743b9eb *inst/extdata/pgPEN_annotations.txt
a2f93f45eae729474d6d83003e4fa0e5 *inst/extdata/pgRNA_ID_pgPEN_library_comp.csv
14fd1238c49e862b26e03229e6b9f89e *man/calc_gi.Rd
46b05340deed17257e5ee7450b11c347 *man/check_internet_available.Rd
55ad873902c6baad6cba66ee3e72714d *man/cn_setup.Rd
08b41e445cbfc6011c3ecbe9637a0033 *man/ctrl_genes.Rd
be97e2b3350b37b1660184f98723edbf *man/delete_annotation.Rd
d8c87f756098f7e2d32e4c1e5e56aebb *man/delete_example_data.Rd
6613acd88fae875e5758d2fd4fe743d5 *man/encrypt_creds_path.Rd
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095a3594d90740b65134392b23bdee75 *man/figshare_manual_download_message.Rd
657f310118b34cceff1f3ddde9cac5b4 *man/get_example_data.Rd
33eae752c839be3ddd71511e337f316a *man/get_figshare.Rd
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3295c26b0446b8429197a7863d7d839d *man/gimap_filter.Rd
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3e31f2fcbb4f6690739a80dadcb65ef3 *man/key_encrypt_creds_path.Rd
5bca078835a95c77a19c9bdfd218625c *man/normalize_depmap_metadata.Rd
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ed2e6b38bc5431b056f243fd11e24034 *man/plot_crispr.Rd
3755ce27ddb364e5c5023a26e297c8ca *man/plot_exp_v_obs_scatter.Rd
94060305a11c04a6740c9f424d455a20 *man/plot_rank_scatter.Rd
8f2dc5c2aba200869595d0e506c1984b *man/plot_targets.Rd
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48c3925336f0ab75f5c0fdf46f84672f *man/qc_cdf.Rd
2a8f89d836562759653bd80ec2d4f068 *man/qc_constructs_countzero_bar.Rd
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3daa8dfb60c7f8bf76ba3cf4c384dbff *man/qc_filter_zerocounts.Rd
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2d479d3236600057c0e368019bf706a2 *man/save_example_treatment_data.Rd
da1440f8952fac17af6257cba45603e2 *man/setup_data.Rd
51755fa86e567b2786868dafc448c6ea *man/supported_cell_lines.Rd
e94d15ac6d840d9f636f6ca9054fc0ad *man/tpm_setup.Rd
b3d2e8791ddaba0ac94191361a336be9 *tests/testthat.R
9d085c6217dee265d9f9163c79c7ecec *tests/testthat/helper-skip.R
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1db2779c863bc831647b84bc4d6a71f8 *tests/testthat/test-run_qc.R
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6bee842fd3149c165c79750c7d00f7a0 *vignettes/images/results_table.png
d0431667829a2dc53ed83504f4bc6f93 *vignettes/images/volcano_plot.png
8063316bbead73484ba0d73b6ac98d50 *vignettes/output_timepoints/CNOT8_CNOT7.png
072f91a3af152cc0983787e823ef6ae3 *vignettes/output_timepoints/example_qc_report.Rmd
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3a26b130b58f50766e9f3e31cf098594 *vignettes/output_timepoints/plot_rank_scatter.png
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097cc36c9890c9009edf00fc09608aec *vignettes/output_treatment/DUSP21_DUSP18.png
93e0be9402b84b1d42c060df85a29151 *vignettes/output_treatment/NDEL1_NDE1.png
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089c35a025e0e13dde178beba3ee6d0e *vignettes/quick-start.Rmd
9b0e8ba3bab76e4b433e08c64307e1d5 *vignettes/timepoint-example.Rmd
77d5474de8ad243e78dd73dc2151be23 *vignettes/treatment_example.Rmd
