CRAN Package Check Results for Package CalibrationCurves

Last updated on 2026-07-09 14:00:38 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	3.1.0	24.51	281.52	306.03	ERROR
r-devel-linux-x86_64-debian-gcc	3.1.0	18.06	233.76	251.82	ERROR
r-devel-linux-x86_64-fedora-clang	3.1.0	37.00	342.50	379.50	ERROR
r-devel-linux-x86_64-fedora-gcc	3.1.0	37.00	316.99	353.99	ERROR
r-devel-windows-x86_64	3.1.0	26.00	221.00	247.00	ERROR
r-patched-linux-x86_64	3.1.0	21.65	322.91	344.56	ERROR
r-release-linux-x86_64	3.1.0	22.68	321.53	344.21	OK
r-release-macos-arm64	3.1.0	6.00	98.00	104.00	OK
r-release-macos-x86_64	3.1.0	16.00	353.00	369.00	OK
r-release-windows-x86_64	3.1.0	27.00	223.00	250.00	ERROR
r-oldrel-macos-arm64	3.1.0	6.00	89.00	95.00	OK
r-oldrel-macos-x86_64	3.1.0	16.00	188.00	204.00	OK
r-oldrel-windows-x86_64	3.1.0	36.00	287.00	323.00	ERROR

Check Details

Version: 3.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘CalibrationCurves.Rmd’ using rmarkdown Quitting from CalibrationCurves.Rmd:612-619 [unnamed-chunk-17] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! Downdated VtV is not positive definite --- Backtrace: ▆ 1. └─CalibrationCurves::valProbCluster(...) 2. ├─base::do.call(...) 3. └─CalibrationCurves (local) `<fn>`(...) 4. ├─base::suppressMessages(do.call("glmer", args)) 5. │ └─base::withCallingHandlers(...) 6. ├─base::do.call("glmer", args) 7. └─lme4::glmer(...) 8. └─lme4::optimizeGlmer(...) 9. └─lme4:::optwrap(...) 10. ├─base::withCallingHandlers(...) 11. ├─base::do.call(optfun, arglist) 12. └─lme4 (local) `<fn>`(...) 13. ├─nM$newf(fn(nM$xeval())) 14. │ └─base::stopifnot(length(value <- as.numeric(value)) == 1L) 15. └─lme4 (local) fn(nM$xeval()) 16. └─lme4 (local) pwrssUpdate(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'CalibrationCurves.Rmd' failed with diagnostics: Downdated VtV is not positive definite --- failed re-building ‘CalibrationCurves.Rmd’ SUMMARY: processing the following file failed: ‘CalibrationCurves.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 3.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘CalibrationCurves.Rmd’ using rmarkdown Quitting from CalibrationCurves.Rmd:647-653 [default_cc] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! Downdated VtV is not positive definite --- Backtrace: ▆ 1. └─CalibrationCurves::valProbCluster(...) 2. ├─base::do.call(...) 3. └─CalibrationCurves (local) `<fn>`(...) 4. ├─base::suppressMessages(do.call("glmer", args)) 5. │ └─base::withCallingHandlers(...) 6. ├─base::do.call("glmer", args) 7. └─lme4::glmer(...) 8. └─lme4::optimizeGlmer(...) 9. └─lme4:::optwrap(...) 10. ├─base::withCallingHandlers(...) 11. ├─base::do.call(optfun, arglist) 12. └─lme4 (local) `<fn>`(...) 13. ├─nM$newf(fn(nM$xeval())) 14. │ └─base::stopifnot(length(value <- as.numeric(value)) == 1L) 15. └─lme4 (local) fn(nM$xeval()) 16. └─lme4 (local) pwrssUpdate(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'CalibrationCurves.Rmd' failed with diagnostics: Downdated VtV is not positive definite --- failed re-building ‘CalibrationCurves.Rmd’ SUMMARY: processing the following file failed: ‘CalibrationCurves.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 3.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [46s/44s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard testthat setup. > # It is recommended that you do not modify it. > # > # Where should you do your testing? > # Learn more about testing at https://r-pkgs.org/testing-basics.html > > library(testthat) > library(CalibrationCurves) Loading required package: rms Loading required package: Hmisc Attaching package: 'Hmisc' The following object is masked from 'package:testthat': describe The following objects are masked from 'package:base': format.pval, units Loading required package: ggplot2 > > test_check("CalibrationCurves") Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Saving _problems/test-valProbCluster-63.R [ FAIL 1 | WARN 0 | SKIP 32 | PASS 115 ] ══ Skipped tests (32) ══════════════════════════════════════════════════════════ • On CRAN (32): 'test-print-methods.R:58:3', 'test-valProbCluster.R:20:3', 'test-valProbCluster.R:33:3', 'test-valProbCluster.R:44:3', 'test-valProbCluster.R:71:3', 'test-valProbCluster.R:81:3', 'test-valProbCluster.R:95:3', 'test-valProbCluster.R:109:3', 'test-valProbCluster.R:121:3', 'test-valProbCluster.R:134:3', 'test-valProbCluster.R:147:3', 'test-valProbCluster.R:159:3', 'test-valProbCluster.R:177:3', 'test-valProbCluster.R:195:3', 'test-valProbCluster.R:207:3', 'test-valProbCluster.R:218:3', 'test-valProbCluster.R:233:3', 'test-valProbCluster.R:243:3', 'test-valProbCluster.R:255:3', 'test-valProbCluster.R:266:3', 'test-valProbCluster.R:283:3', 'test-valProbCluster.R:295:3', 'test-valProbCluster.R:306:3', 'test-valProbCluster.R:317:3', 'test-valProbCluster.R:334:3', 'test-valProbCluster.R:345:3', 'test-valProbCluster.R:356:3', 'test-valProbCluster.R:374:3', 'test-valProbCluster.R:397:3', 'test-valProbCluster.R:413:3', 'test-valProbCluster.R:440:3', 'test-valProbCluster.R:451:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-valProbCluster.R:63:3'): valProbCluster errors on single cluster ── <Rcpp::exception/C++Error/error/condition> Error: Downdated VtV is not positive definite Backtrace: ▆ 1. └─CalibrationCurves (local) local_cluster_preds() at test-valProbCluster.R:63:3 2. └─lme4::glmer(...) at test-valProbCluster.R:7:3 3. └─lme4::optimizeGlmer(...) 4. └─lme4:::optwrap(...) 5. └─lme4:::deriv12(fn, opt$par, fx = opt$value) 6. └─lme4 (local) fun(xss, ...) 7. └─lme4 (local) pwrssUpdate(...) [ FAIL 1 | WARN 0 | SKIP 32 | PASS 115 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 3.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘CalibrationCurves.Rmd’ using rmarkdown Quitting from CalibrationCurves.Rmd:612-619 [unnamed-chunk-17] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! Downdated VtV is not positive definite --- Backtrace: ▆ 1. └─CalibrationCurves::valProbCluster(...) 2. ├─base::do.call(...) 3. └─CalibrationCurves (local) `<fn>`(...) 4. ├─base::suppressMessages(do.call("glmer", args)) 5. │ └─base::withCallingHandlers(...) 6. ├─base::do.call("glmer", args) 7. └─lme4::glmer(...) 8. └─lme4::optimizeGlmer(...) 9. └─lme4:::optwrap(...) 10. ├─base::withCallingHandlers(...) 11. ├─base::do.call(optfun, arglist) 12. └─lme4 (local) `<fn>`(...) 13. ├─nM$newf(fn(nM$xeval())) 14. │ └─base::stopifnot(length(value <- as.numeric(value)) == 1L) 15. └─lme4 (local) fn(nM$xeval()) 16. └─lme4 (local) pwrssUpdate(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'CalibrationCurves.Rmd' failed with diagnostics: Downdated VtV is not positive definite --- failed re-building ‘CalibrationCurves.Rmd’ SUMMARY: processing the following file failed: ‘CalibrationCurves.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 3.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘CalibrationCurves.Rmd’ using rmarkdown Quitting from CalibrationCurves.Rmd:639-644 [default] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! Downdated VtV is not positive definite --- Backtrace: ▆ 1. └─CalibrationCurves::valProbCluster(...) 2. ├─base::do.call(...) 3. └─CalibrationCurves (local) `<fn>`(...) 4. ├─base::suppressMessages(do.call("glmer", args)) 5. │ └─base::withCallingHandlers(...) 6. ├─base::do.call("glmer", args) 7. └─lme4::glmer(...) 8. └─lme4::optimizeGlmer(...) 9. └─lme4:::optwrap(...) 10. ├─base::withCallingHandlers(...) 11. ├─base::do.call(optfun, arglist) 12. └─lme4 (local) `<fn>`(...) 13. ├─nM$newf(fn(nM$xeval())) 14. │ └─base::stopifnot(length(value <- as.numeric(value)) == 1L) 15. └─lme4 (local) fn(nM$xeval()) 16. └─lme4 (local) pwrssUpdate(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'CalibrationCurves.Rmd' failed with diagnostics: Downdated VtV is not positive definite --- failed re-building ‘CalibrationCurves.Rmd’ SUMMARY: processing the following file failed: ‘CalibrationCurves.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 3.1.0
Check: tests
Result: ERROR Running 'testthat.R' [18s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard testthat setup. > # It is recommended that you do not modify it. > # > # Where should you do your testing? > # Learn more about testing at https://r-pkgs.org/testing-basics.html > > library(testthat) > library(CalibrationCurves) Loading required package: rms Loading required package: Hmisc Attaching package: 'Hmisc' The following object is masked from 'package:testthat': describe The following objects are masked from 'package:base': format.pval, units Loading required package: ggplot2 > > test_check("CalibrationCurves") Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Flavor: r-devel-windows-x86_64

Version: 3.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'CalibrationCurves.Rmd' using rmarkdown Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 3.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [41s/50s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard testthat setup. > # It is recommended that you do not modify it. > # > # Where should you do your testing? > # Learn more about testing at https://r-pkgs.org/testing-basics.html > > library(testthat) > library(CalibrationCurves) Loading required package: rms Loading required package: Hmisc Attaching package: 'Hmisc' The following object is masked from 'package:testthat': describe The following objects are masked from 'package:base': format.pval, units Loading required package: ggplot2 > > test_check("CalibrationCurves") Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Saving _problems/test-valProbCluster-55.R Saving _problems/test-valProbCluster-63.R [ FAIL 2 | WARN 0 | SKIP 32 | PASS 114 ] ══ Skipped tests (32) ══════════════════════════════════════════════════════════ • On CRAN (32): 'test-print-methods.R:58:3', 'test-valProbCluster.R:20:3', 'test-valProbCluster.R:33:3', 'test-valProbCluster.R:44:3', 'test-valProbCluster.R:71:3', 'test-valProbCluster.R:81:3', 'test-valProbCluster.R:95:3', 'test-valProbCluster.R:109:3', 'test-valProbCluster.R:121:3', 'test-valProbCluster.R:134:3', 'test-valProbCluster.R:147:3', 'test-valProbCluster.R:159:3', 'test-valProbCluster.R:177:3', 'test-valProbCluster.R:195:3', 'test-valProbCluster.R:207:3', 'test-valProbCluster.R:218:3', 'test-valProbCluster.R:233:3', 'test-valProbCluster.R:243:3', 'test-valProbCluster.R:255:3', 'test-valProbCluster.R:266:3', 'test-valProbCluster.R:283:3', 'test-valProbCluster.R:295:3', 'test-valProbCluster.R:306:3', 'test-valProbCluster.R:317:3', 'test-valProbCluster.R:334:3', 'test-valProbCluster.R:345:3', 'test-valProbCluster.R:356:3', 'test-valProbCluster.R:374:3', 'test-valProbCluster.R:397:3', 'test-valProbCluster.R:413:3', 'test-valProbCluster.R:440:3', 'test-valProbCluster.R:451:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-valProbCluster.R:55:3'): valProbCluster errors on non-binary y ── <Rcpp::exception/C++Error/error/condition> Error: Downdated VtV is not positive definite Backtrace: ▆ 1. └─CalibrationCurves (local) local_cluster_preds() at test-valProbCluster.R:55:3 2. └─lme4::glmer(...) at test-valProbCluster.R:7:3 3. └─lme4::optimizeGlmer(...) 4. └─lme4:::optwrap(...) 5. └─lme4:::deriv12(fn, opt$par, fx = opt$value) 6. └─lme4 (local) fun(xsa, ...) 7. └─lme4 (local) pwrssUpdate(...) ── Error ('test-valProbCluster.R:63:3'): valProbCluster errors on single cluster ── <Rcpp::exception/C++Error/error/condition> Error: Downdated VtV is not positive definite Backtrace: ▆ 1. └─CalibrationCurves (local) local_cluster_preds() at test-valProbCluster.R:63:3 2. └─lme4::glmer(...) at test-valProbCluster.R:7:3 3. └─lme4::optimizeGlmer(...) 4. └─lme4:::optwrap(...) 5. ├─base::withCallingHandlers(...) 6. ├─base::do.call(optfun, arglist) 7. └─lme4 (local) `<fn>`(...) 8. ├─nM$newf(fn(nM$xeval())) 9. │ └─base::stopifnot(length(value <- as.numeric(value)) == 1L) 10. └─lme4 (local) fn(nM$xeval()) 11. └─lme4 (local) pwrssUpdate(...) [ FAIL 2 | WARN 0 | SKIP 32 | PASS 114 ] Error: ! Test failures. Execution halted Flavor: r-patched-linux-x86_64

Version: 3.1.0
Check: tests
Result: ERROR Running 'testthat.R' [17s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard testthat setup. > # It is recommended that you do not modify it. > # > # Where should you do your testing? > # Learn more about testing at https://r-pkgs.org/testing-basics.html > > library(testthat) > library(CalibrationCurves) Loading required package: rms Loading required package: Hmisc Attaching package: 'Hmisc' The following object is masked from 'package:testthat': describe The following objects are masked from 'package:base': format.pval, units Loading required package: ggplot2 > > test_check("CalibrationCurves") Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Flavor: r-release-windows-x86_64

Version: 3.1.0
Check: tests
Result: ERROR Running 'testthat.R' [22s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard testthat setup. > # It is recommended that you do not modify it. > # > # Where should you do your testing? > # Learn more about testing at https://r-pkgs.org/testing-basics.html > > library(testthat) > library(CalibrationCurves) Loading required package: rms Loading required package: Hmisc Attaching package: 'Hmisc' The following object is masked from 'package:testthat': describe The following objects are masked from 'package:base': format.pval, units Loading required package: ggplot2 > > test_check("CalibrationCurves") Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Waiting for profiling to be done... Flavor: r-oldrel-windows-x86_64