Last updated on 2026-10-24 12:51:35 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.2.3 | 22.49 | 265.83 | 288.32 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.2.3 | 15.32 | 138.25 | 153.57 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.2.3 | 18.00 | 194.22 | 212.22 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.2.3 | 17.00 | 190.97 | 207.97 | OK | |
| r-devel-windows-x86_64 | 2.2.3 | 27.00 | 355.00 | 382.00 | OK | |
| r-patched-linux-x86_64 | 2.2.3 | 0.37 | 2.33 | 2.70 | ERROR | |
| r-release-linux-x86_64 | 2.2.3 | 21.83 | 250.20 | 272.03 | OK | |
| r-release-macos-arm64 | 2.2.3 | 5.00 | 78.00 | 83.00 | OK | |
| r-release-macos-x86_64 | 2.2.3 | 16.00 | 257.00 | 273.00 | OK | |
| r-release-windows-x86_64 | 2.2.3 | 25.00 | 368.00 | 393.00 | OK | |
| r-oldrel-macos-arm64 | 2.2.3 | 5.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 2.2.3 | 16.00 | 193.00 | 209.00 | OK | |
| r-oldrel-windows-x86_64 | 2.2.3 | 35.00 | 486.00 | 521.00 | OK |
Version: 2.2.3
Check: examples
Result: ERROR
Running examples in ‘IOBR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CalculateTimeROC
> ### Title: Calculate Time-Dependent ROC Curve
> ### Aliases: CalculateTimeROC
>
> ### ** Examples
>
> if (requireNamespace("glmnet", quietly = TRUE) &&
+ requireNamespace("survival", quietly = TRUE) &&
+ requireNamespace("timeROC", quietly = TRUE)) {
+ library(survival)
+ dat <- na.omit(lung[, c("time", "status", "age", "sex", "ph.ecog")])
+ dat$status <- dat$status - 1
+ x <- as.matrix(dat[, c("age", "sex", "ph.ecog")])
+ y <- Surv(dat$time, dat$status)
+ fit <- glmnet::glmnet(x, y, family = "cox")
+ actual_outcome <- data.frame(time = dat$time, status = dat$status)
+ roc_info <- CalculateTimeROC(
+ model = fit, newx = x, s = 0.01, acture.y = actual_outcome,
+ modelname = "glmnet Cox Model", time_prob = 0.5
+ )
+ print(roc_info$AUC)
+ }
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Error in a$specials[[i]] : subscript out of bounds
Calls: CalculateTimeROC ... EventHistory.frame -> model.design -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.2.3
Check: package dependencies
Result: ERROR
Package required but not available: ‘GSVA’
Package suggested but not available for checking: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-patched-linux-x86_64
Version: 2.2.3
Check: package dependencies
Result: ERROR
Package required but not available: ‘GSVA’
Package suggested but not available for checking: ‘easier’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64