Last updated on 2023-11-30 12:49:32 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1 | 44.54 | 350.83 | 395.37 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1 | 33.99 | 252.64 | 286.63 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1 | 519.85 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1 | 523.17 | OK | |||
| r-devel-windows-x86_64 | 1.1 | 36.00 | 254.00 | 290.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1 | 51.91 | 331.51 | 383.42 | OK | |
| r-release-linux-x86_64 | 1.1 | 33.05 | 323.65 | 356.70 | OK | |
| r-release-macos-arm64 | 1.1 | 123.00 | NOTE | |||
| r-release-macos-x86_64 | 1.1 | 171.00 | NOTE | |||
| r-release-windows-x86_64 | 1.1 | 46.00 | 329.00 | 375.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.1 | 132.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.1 | 197.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.1 | 51.00 | 312.00 | 363.00 | NOTE |
Version: 1.1
Check: Rd files
Result: NOTE
checkRd: (-1) fl.drFitModel.Rd:28: Lost braces; missing escapes or markup?
28 | \item \code{yEC50}: {Response value related to EC50.}
| ^
checkRd: (-1) fl.drFitModel.Rd:29: Lost braces; missing escapes or markup?
29 | \item \code{y.min}: {Minimum fluorescence ('leakiness', if lowest concentration is 0).}
| ^
checkRd: (-1) fl.drFitModel.Rd:30: Lost braces; missing escapes or markup?
30 | \item \code{y.max}: {Maximum fluorescence.}
| ^
checkRd: (-1) fl.drFitModel.Rd:31: Lost braces
31 | \item \code{fc}: {Fold change (\code{y.max} divided by \code{y.min}).}
| ^
checkRd: (-1) fl.drFitModel.Rd:32: Lost braces; missing escapes or markup?
32 | \item \code{K}: {Concentration at half-maximal response ('sensitivity').}
| ^
checkRd: (-1) fl.drFitModel.Rd:33: Lost braces; missing escapes or markup?
33 | \item \code{n}: {Cooperativity.}
| ^
checkRd: (-1) fl.drFitModel.Rd:34: Lost braces; missing escapes or markup?
34 | \item \code{yEC50.orig}: {Response value for EC50 in original scale, if a transformation was applied.}
| ^
checkRd: (-1) fl.drFitModel.Rd:35: Lost braces; missing escapes or markup?
35 | \item \code{K.orig}: {K in original scale, if a transformation was applied.}
| ^
checkRd: (-1) fl.drFitModel.Rd:36: Lost braces
36 | \item \code{test.nm}: {Test identifier extracted from \code{test}.}
| ^
checkRd: (-1) flFitLinear.Rd:45: Lost braces; missing escapes or markup?
45 | \item \code{y0}: {Minimum fluorescence value considered for the heuristic linear method.}
| ^
checkRd: (-1) flFitLinear.Rd:46: Lost braces; missing escapes or markup?
46 | \item \code{dY}: {Difference in maximum fluorescence and minimum fluorescence}
| ^
checkRd: (-1) flFitLinear.Rd:47: Lost braces; missing escapes or markup?
47 | \item \code{A}: {Maximum fluorescence}
| ^
checkRd: (-1) flFitLinear.Rd:48: Lost braces; missing escapes or markup?
48 | \item \code{y0_lm}: {Intersection of the linear fit with the abscissa.}
| ^
checkRd: (-1) flFitLinear.Rd:49: Lost braces; missing escapes or markup?
49 | \item \code{max_slope}: {Maximum slope of the linear fit.}
| ^
checkRd: (-1) flFitLinear.Rd:50: Lost braces; missing escapes or markup?
50 | \item \code{tD}: {Doubling time.}
| ^
checkRd: (-1) flFitLinear.Rd:51: Lost braces; missing escapes or markup?
51 | \item \code{slope.se}: {Standard error of the maximum slope.}
| ^
checkRd: (-1) flFitLinear.Rd:52: Lost braces; missing escapes or markup?
52 | \item \code{lag}: {Lag X.}
| ^
checkRd: (-1) flFitLinear.Rd:53: Lost braces; missing escapes or markup?
53 | \item \code{x.max_start}: {X value of the first data point within the window used for the linear regression.}
| ^
checkRd: (-1) flFitLinear.Rd:54: Lost braces; missing escapes or markup?
54 | \item \code{x.max_end}: {X value of the last data point within the window used for the linear regression.}
| ^
checkRd: (-1) flFitLinear.Rd:55: Lost braces; missing escapes or markup?
55 | \item \code{x.turn}: {For biphasic: X at the inflection point that separates two phases.}
| ^
checkRd: (-1) flFitLinear.Rd:56: Lost braces; missing escapes or markup?
56 | \item \code{max.slope2}: {For biphasic: Slope of the second phase.}
| ^
checkRd: (-1) flFitLinear.Rd:57: Lost braces; missing escapes or markup?
57 | \item \code{tD2}: {Doubling time of the second phase.}
| ^
checkRd: (-1) flFitLinear.Rd:58: Lost braces; missing escapes or markup?
58 | \item \code{y0_lm2}: {For biphasic: Intersection of the linear fit of the second phase with the abscissa.}
| ^
checkRd: (-1) flFitLinear.Rd:59: Lost braces; missing escapes or markup?
59 | \item \code{lag2}: {For biphasic: Lag time determined for the second phase..}
| ^
checkRd: (-1) flFitLinear.Rd:60: Lost braces; missing escapes or markup?
60 | \item \code{x.max2_start}: {For biphasic: X value of the first data point within the window used for the linear regression of the second phase.}
| ^
checkRd: (-1) flFitLinear.Rd:61: Lost braces; missing escapes or markup?
61 | \item \code{x.max2_end}: {For biphasic: X value of the last data point within the window used for the linear regression of the second phase.}
| ^
checkRd: (-1) flFitSpline.Rd:55: Lost braces; missing escapes or markup?
55 | \item \code{A}: {Maximum fluorescence.}
| ^
checkRd: (-1) flFitSpline.Rd:56: Lost braces; missing escapes or markup?
56 | \item \code{dY}: {Difference in maximum fluorescence and minimum fluorescence.}
| ^
checkRd: (-1) flFitSpline.Rd:57: Lost braces; missing escapes or markup?
57 | \item \code{max_slope}: {Maximum slope of fluorescence-vs.-x data (i.e., maximum in first derivative of the spline).}
| ^
checkRd: (-1) flFitSpline.Rd:58: Lost braces; missing escapes or markup?
58 | \item \code{x.max}: {Time at the maximum slope.}
| ^
checkRd: (-1) flFitSpline.Rd:59: Lost braces; missing escapes or markup?
59 | \item \code{lambda}: {Lag time.}
| ^
checkRd: (-1) flFitSpline.Rd:60: Lost braces; missing escapes or markup?
60 | \item \code{b.tangent}: {Intersection of the tangent at the maximum slope with the abscissa.}
| ^
checkRd: (-1) flFitSpline.Rd:61: Lost braces; missing escapes or markup?
61 | \item \code{max_slope2}: {For biphasic course of fluorescence: Maximum slope of fluorescence-vs.-x data of the second phase.}
| ^
checkRd: (-1) flFitSpline.Rd:62: Lost braces; missing escapes or markup?
62 | \item \code{lambda2}: {For biphasic course of fluorescence: Lag time determined for the second phase.}
| ^
checkRd: (-1) flFitSpline.Rd:63: Lost braces; missing escapes or markup?
63 | \item \code{x.max2}: {For biphasic course of fluorescence: Time at the maximum slope of the second phase.}
| ^
checkRd: (-1) flFitSpline.Rd:64: Lost braces; missing escapes or markup?
64 | \item \code{b.tangent2}: {For biphasic course of fluorescence: Intersection of the tangent at the maximum slope of the second phase with the abscissa.}
| ^
checkRd: (-1) flFitSpline.Rd:65: Lost braces; missing escapes or markup?
65 | \item \code{integral}: {Area under the curve of the spline fit.}
| ^
checkRd: (-1) growth.drFitSpline.Rd:26: Lost braces; missing escapes or markup?
26 | \item{spline.low}{\code{x} and {y} values of \code{\link{lowess}} spline fit on raw data. Used to call \code{\link{smooth.spline}}.}
| ^
checkRd: (-1) growth.drFitSpline.Rd:29: Lost braces; missing escapes or markup?
29 | \item \code{EC50}: {Concentration at half-maximal response.}
| ^
checkRd: (-1) growth.drFitSpline.Rd:30: Lost braces; missing escapes or markup?
30 | \item \code{yEC50}: {Response value related to EC50.}
| ^
checkRd: (-1) growth.drFitSpline.Rd:31: Lost braces; missing escapes or markup?
31 | \item \code{EC50.orig}: {EC50 value in original scale, if a transformation was applied.}
| ^
checkRd: (-1) growth.drFitSpline.Rd:32: Lost braces; missing escapes or markup?
32 | \item \code{yEC50.orig}: {Response value for EC50 in original scale, if a transformation was applied.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:65: Lost braces; missing escapes or markup?
65 | \item \code{y0}: {Minimum growth value considered for the heuristic linear method.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:66: Lost braces; missing escapes or markup?
66 | \item \code{dY}: {Difference in maximum growth and minimum growth.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:67: Lost braces; missing escapes or markup?
67 | \item \code{A}: {Maximum growth.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:68: Lost braces; missing escapes or markup?
68 | \item \code{y0_lm}: {Intersection of the linear fit with the abscissa.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:69: Lost braces; missing escapes or markup?
69 | \item \code{mumax}: {Maximum growth rate (i.e., slope of the linear fit).}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:70: Lost braces; missing escapes or markup?
70 | \item \code{tD}: {Doubling time.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:71: Lost braces; missing escapes or markup?
71 | \item \code{mu.se}: {Standard error of the maximum growth rate.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:72: Lost braces; missing escapes or markup?
72 | \item \code{lag}: {Lag time.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:73: Lost braces; missing escapes or markup?
73 | \item \code{tmax_start}: {Time value of the first data point within the window used for the linear regression.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:74: Lost braces; missing escapes or markup?
74 | \item \code{tmax_end}: {Time value of the last data point within the window used for the linear regression.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:75: Lost braces; missing escapes or markup?
75 | \item \code{t_turn}: {For biphasic growth: Time of the inflection point that separates two growth phases.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:76: Lost braces; missing escapes or markup?
76 | \item \code{mumax2}: {For biphasic growth: Growth rate of the second growth phase.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:77: Lost braces; missing escapes or markup?
77 | \item \code{tD2}: {Doubling time of the second growth phase.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:78: Lost braces; missing escapes or markup?
78 | \item \code{y0_lm2}: {For biphasic growth: Intersection of the linear fit of the second growth phase with the abscissa.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:79: Lost braces; missing escapes or markup?
79 | \item \code{lag2}: {For biphasic growth: Lag time determined for the second growth phase..}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:80: Lost braces; missing escapes or markup?
80 | \item \code{tmax2_start}: {For biphasic growth: Time value of the first data point within the window used for the linear regression of the second growth phase.}
| ^
checkRd: (-1) growth.gcFitLinear.Rd:81: Lost braces; missing escapes or markup?
81 | \item \code{tmax2_end}: {For biphasic growth: Time value of the last data point within the window used for the linear regression of the second growth phase.}
| ^
checkRd: (-1) growth.gcFitModel.Rd:27: Lost braces; missing escapes or markup?
27 | \item \code{A}: {Maximum growth.}
| ^
checkRd: (-1) growth.gcFitModel.Rd:28: Lost braces; missing escapes or markup?
28 | \item \code{dY}: {Difference in maximum growth and minimum growth of the fitted model.}
| ^
checkRd: (-1) growth.gcFitModel.Rd:29: Lost braces; missing escapes or markup?
29 | \item \code{mu}: {Maximum growth rate (i.e., maximum in first derivative of the spline).}
| ^
checkRd: (-1) growth.gcFitModel.Rd:30: Lost braces; missing escapes or markup?
30 | \item \code{lambda}: {Lag time.}
| ^
checkRd: (-1) growth.gcFitModel.Rd:31: Lost braces; missing escapes or markup?
31 | \item \code{b.tangent}: {Intersection of the tangent at the maximum growth rate with the abscissa.}
| ^
checkRd: (-1) growth.gcFitModel.Rd:32: Lost braces; missing escapes or markup?
32 | \item \code{fitpar}: {For some models: list of additional parameters used in the equations describing the growth curve.}
| ^
checkRd: (-1) growth.gcFitModel.Rd:33: Lost braces; missing escapes or markup?
33 | \item \code{integral}: {Area under the curve of the parametric fit.}
| ^
checkRd: (-1) growth.gcFitSpline.Rd:42: Lost braces; missing escapes or markup?
42 | \item \code{A}: {Maximum growth.}
| ^
checkRd: (-1) growth.gcFitSpline.Rd:43: Lost braces; missing escapes or markup?
43 | \item \code{dY}: {Difference in maximum growth and minimum growth.}
| ^
checkRd: (-1) growth.gcFitSpline.Rd:44: Lost braces; missing escapes or markup?
44 | \item \code{mu}: {Maximum growth rate (i.e., maximum in first derivative of the spline).}
| ^
checkRd: (-1) growth.gcFitSpline.Rd:45: Lost braces; missing escapes or markup?
45 | \item \code{tD}: {Doubling time.}
| ^
checkRd: (-1) growth.gcFitSpline.Rd:46: Lost braces; missing escapes or markup?
46 | \item \code{t.max}: {Time at the maximum growth rate.}
| ^
checkRd: (-1) growth.gcFitSpline.Rd:47: Lost braces; missing escapes or markup?
47 | \item \code{lambda}: {Lag time.}
| ^
checkRd: (-1) growth.gcFitSpline.Rd:48: Lost braces; missing escapes or markup?
48 | \item \code{b.tangent}: {Intersection of the tangent at the maximum growth rate with the abscissa.}
| ^
checkRd: (-1) growth.gcFitSpline.Rd:49: Lost braces; missing escapes or markup?
49 | \item \code{mu2}: {For biphasic growth: Growth rate of the second growth phase.}
| ^
checkRd: (-1) growth.gcFitSpline.Rd:50: Lost braces; missing escapes or markup?
50 | \item \code{tD2}: {Doubling time of the second growth phase.}
| ^
checkRd: (-1) growth.gcFitSpline.Rd:51: Lost braces; missing escapes or markup?
51 | \item \code{lambda2}: {For biphasic growth: Lag time determined for the second growth phase.}
| ^
checkRd: (-1) growth.gcFitSpline.Rd:52: Lost braces; missing escapes or markup?
52 | \item \code{t.max2}: {For biphasic growth: Time at the maximum growth rate of the second growth phase.}
| ^
checkRd: (-1) growth.gcFitSpline.Rd:53: Lost braces; missing escapes or markup?
53 | \item \code{b.tangent2}: {For biphasic growth: Intersection of the tangent at the maximum growth rate of the second growth phase with the abscissa.}
| ^
checkRd: (-1) growth.gcFitSpline.Rd:54: Lost braces; missing escapes or markup?
54 | \item \code{integral}: {Area under the curve of the spline fit.}
| ^
checkRd: (-1) plot.drFit.Rd:84: Lost braces
84 | code{plot.drFit} calls code{plot.drFitSpline} for each group used in a dose-response analysis
| ^
checkRd: (-1) plot.drFit.Rd:84: Lost braces
84 | code{plot.drFit} calls code{plot.drFitSpline} for each group used in a dose-response analysis
| ^
checkRd: (-1) plot.drFitSpline.Rd:78: Lost braces
78 | code{plot.drFitSpline} generates the spline fit plot for response-parameter vs. concentration data
| ^
checkRd: (-1) plot.drFitfl.Rd:81: Lost braces
81 | code{drFitfl} calls \code{\link{plot.drFitFLModel}} for each group used in a dose-response analysis with \code{dr.method = "model"}
| ^
checkRd: (-1) plot.gcFitSpline.Rd:93: Lost braces
93 | code{plot.gcFitSpline} generates the spline fit plot for a single sample.
| ^
checkRd: (-1) plot.grid.Rd:47: Lost braces
47 | \item{x}{A \code{grofit} or \code{flFitRes} object created with \code{\link{growth.workflow}} or code{\link{fl.workflow}} containing spline fits.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.1
Check: installed package size
Result: NOTE
installed size is 7.2Mb
sub-directories of 1Mb or more:
doc 3.7Mb
shiny_app 1.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64