Last updated on 2026-05-07 12:49:55 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.1 | 35.21 | 538.57 | 573.78 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.0.1 | 21.44 | 366.57 | 388.01 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.0.1 | 71.00 | 917.74 | 988.74 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.0.1 | 68.00 | 889.63 | 957.63 | ERROR | |
| r-devel-windows-x86_64 | 0.0.1 | 36.00 | 457.00 | 493.00 | NOTE | |
| r-patched-linux-x86_64 | 0.0.1 | 32.77 | 510.80 | 543.57 | NOTE | |
| r-release-linux-x86_64 | 0.0.1 | 30.53 | 511.76 | 542.29 | NOTE | |
| r-release-macos-arm64 | 0.0.1 | 8.00 | 124.00 | 132.00 | NOTE | |
| r-release-macos-x86_64 | 0.0.1 | 23.00 | 551.00 | 574.00 | NOTE | |
| r-release-windows-x86_64 | 0.0.1 | 33.00 | 465.00 | 498.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.0.1 | NOTE | ||||
| r-oldrel-macos-x86_64 | 0.0.1 | 21.00 | 494.00 | 515.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.0.1 | 50.00 | 643.00 | 693.00 | NOTE |
Version: 0.0.1
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘fit_density_ratio.R’ ‘fit_plug_and_play.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.0.1
Check: R code for possible problems
Result: NOTE
evaluate_range_map: no visible global function definition for ‘%>%’
get_env_bg: no visible global function definition for ‘%>%’
get_env_pres: no visible global function definition for ‘%>%’
get_response_curves: no visible global function definition for ‘%>%’
stratify_spatial: no visible global function definition for ‘%>%’
Undefined global functions or variables:
%>%
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.0.1
Check: examples
Result: ERROR
Running examples in ‘S4DM-Ex.R’ failed
The error most likely occurred in:
> ### Name: evaluate_range_map
> ### Title: Evaluate S4DM range map quality
> ### Aliases: evaluate_range_map
>
> ### ** Examples
>
> {
+
+ # load in sample data
+
+ library(S4DM)
+ library(terra)
+
+ # occurrence points
+ data("sample_points")
+ occurrences <- sample_points
+
+ # environmental data
+ env <- rast(system.file('ex/sample_env.tif', package="S4DM"))
+
+ # rescale the environmental data
+
+ env <- scale(env)
+
+ # Evaluate a gaussian/gaussian model calculated with the numbag approach
+ # using 10 bootstrap replicates.
+
+ evaluate_range_map(occurrences = occurrences,
+ env = env,
+ method = NULL,
+ presence_method = "gaussian",
+ background_method = "gaussian",
+ bootstrap = "numbag",
+ bootstrap_reps = 10,
+ quantile = 0.05,
+ constraint_regions = NULL,
+ background_buffer_width = 100000)
+
+
+
+ }
terra 1.9.25
Error in coords %>% st_transform(crs = st_crs(env)) :
could not find function "%>%"
Calls: evaluate_range_map -> get_env_bg
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc