Last updated on 2026-07-10 00:53:10 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-fedora-clang | 1.0.10 | 35.00 | 307.40 | 342.40 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.10 | 35.00 | 298.38 | 333.38 | OK | |
| r-release-macos-arm64 | 1.0.10 | 7.00 | 55.00 | 62.00 | OK | |
| r-release-macos-x86_64 | 1.0.10 | 16.00 | 173.00 | 189.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.10 | 6.00 | 50.00 | 56.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.10 | 16.00 | 142.00 | 158.00 | ERROR |
Version: 1.0.10
Check: examples
Result: ERROR
Running examples in ‘SATS-Ex.R’ failed
The error most likely occurred in:
> ### Name: GenerateLMatrix
> ### Title: Generate an L Matrix
> ### Aliases: GenerateLMatrix
>
> ### ** Examples
>
> data(SimData, package="SATS")
>
> Panel_context <- GeneratePanelSize(genomic_information=SimData$PanelEx, Class="SBS",
+ SBS_order="COSMIC")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called ‘BSgenome.Hsapiens.UCSC.hg19’
Error in myGetSeq(ref.genome, Seq_assay_GRanges) :
Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Calls: GeneratePanelSize -> GeneratePanelSize_SBS -> myGetSeq
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.10
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SATS)
>
> test_check("SATS")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
Saving _problems/test-GeneratePanelSize-14.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-GeneratePanelSize.R:14:1'): (code run outside of `test_that()`) ──
Error in `myGetSeq(ref.genome, Seq_assay_GRanges)`: Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Backtrace:
▆
1. └─SATS::GeneratePanelSize(...) at test-GeneratePanelSize.R:14:1
2. └─SATS:::GeneratePanelSize_SBS(...)
3. └─SATS:::myGetSeq(ref.genome, Seq_assay_GRanges)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.0.10
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SATS)
>
> test_check("SATS")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
Saving _problems/test-GeneratePanelSize-14.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-GeneratePanelSize.R:14:1'): (code run outside of `test_that()`) ──
Error in `myGetSeq(ref.genome, Seq_assay_GRanges)`: Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Backtrace:
▆
1. └─SATS::GeneratePanelSize(...) at test-GeneratePanelSize.R:14:1
2. └─SATS:::GeneratePanelSize_SBS(...)
3. └─SATS:::myGetSeq(ref.genome, Seq_assay_GRanges)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64