Last updated on 2026-10-24 12:51:29 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.2 | 8.92 | 91.83 | 100.75 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.3.2 | 6.53 | 59.92 | 66.45 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.2 | 65.93 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.2 | 7.00 | 70.16 | 77.16 | OK | |
| r-devel-windows-x86_64 | 0.3.2 | 10.00 | 106.00 | 116.00 | OK | |
| r-patched-linux-x86_64 | 0.3.2 | 8.36 | 80.09 | 88.45 | OK | |
| r-release-linux-x86_64 | 0.3.2 | 8.42 | 79.93 | 88.35 | OK | |
| r-release-macos-arm64 | 0.3.2 | 2.00 | 27.00 | 29.00 | OK | |
| r-release-macos-x86_64 | 0.3.2 | 6.00 | 96.00 | 102.00 | OK | |
| r-release-windows-x86_64 | 0.3.2 | 10.00 | 93.00 | 103.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.2 | OK | ||||
| r-oldrel-macos-x86_64 | 0.3.2 | 6.00 | 97.00 | 103.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.2 | 15.00 | 117.00 | 132.00 | OK |
Version: 0.3.2
Check: Rd contents
Result: NOTE
Rd files without \usage:
‘cureph-object.Rd’
\arguments should not be documented without \usage.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.2
Check: examples
Result: ERROR
Running examples in ‘curephEM-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cureph
> ### Title: NPMLE for Logistic-CoxPH Cure-Rate Model
> ### Aliases: cureph
>
> ### ** Examples
>
>
> # A simulated data set
> data('sim.cureph.data')
> # Or you may generate another one
> sim.cureph.data = cureph.simgen()
>
> # Check out the true coefficients and baseline survival
> attributes(sim.cureph.data)
$names
[1] "time" "time2" "event" "Z1" "Z2" "Z3" "Z4"
$row.names
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18
[19] 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36
[37] 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54
[55] 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72
[73] 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90
[91] 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108
[109] 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126
[127] 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144
[145] 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162
[163] 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180
[181] 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198
[199] 199 200
$class
[1] "data.frame"
$true.coef
$true.coef$a
[1] 1.00 -0.63 1.00 0.00 0.00 0.00 0.00
$true.coef$b
[1] -0.2 0.3 0.0 0.0 0.0 0.0
$true.baseline.surv
function (x)
pmax(pmin(1 - x/20, 1), 0)
<bytecode: 0x555f82239658>
<environment: 0x555f8223ed88>
>
> # Fit logistic-CoxPH cure-rate model
> fit=cureph(Surv.cure(time,time2,event,origin=0,end=20)~Z1+Z2+Z3+Z4,data=sim.cureph.data)
Error in a$specials[[i]] : subscript out of bounds
Calls: cureph ... survfit.coxph -> model.matrix.coxph -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(curephEM)
Loading required package: survival
Loading required package: Matrix
>
> test_check("curephEM")
Saving _problems/test-curephEM-10.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-curephEM.R:10:1'): (code run outside of `test_that()`) ─────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─curephEM::cureph(...) at test-curephEM.R:10:1
2. └─curephEM (local) fitter(Y, A, Z, init, control, var.method)
3. └─curephEM:::CureCox.EM.fit(...)
4. ├─survival::survfit(coxfit0)
5. └─survival:::survfit.coxph(coxfit0)
6. └─survival:::model.matrix.coxph(object, data = mf)
7. └─stats::delete.response(object$terms)
8. └─stats (local) off(a$specials[[i]])
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc