Last updated on 2026-10-24 01:51:31 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.1 | 10.49 | 159.95 | 170.44 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.5.1 | 8.38 | 106.13 | 114.51 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.5.1 | 112.11 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.5.1 | 116.30 | OK | |||
| r-devel-windows-x86_64 | 0.5.1 | 14.00 | 150.00 | 164.00 | OK | |
| r-patched-linux-x86_64 | 0.5.1 | 10.11 | 144.51 | 154.62 | OK | |
| r-release-linux-x86_64 | 0.5.1 | 10.53 | 144.53 | 155.06 | OK | |
| r-release-macos-arm64 | 0.5.1 | 3.00 | 37.00 | 40.00 | OK | |
| r-release-macos-x86_64 | 0.5.1 | 7.00 | 148.00 | 155.00 | OK | |
| r-release-windows-x86_64 | 0.5.1 | 12.00 | 138.00 | 150.00 | OK | |
| r-oldrel-macos-arm64 | 0.5.0 | 4.00 | 35.00 | 39.00 | OK | |
| r-oldrel-macos-x86_64 | 0.5.1 | 8.00 | 170.00 | 178.00 | OK | |
| r-oldrel-windows-x86_64 | 0.5.1 | 15.00 | 185.00 | 200.00 | OK |
Version: 0.5.1
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [16s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dcurves)
>
> test_check("dcurves")
Starting 2 test processes.
> test-plot.R: # ggplot2 code to create DCA figure -------------------------------
> test-plot.R: as_tibble(x) %>%
> test-plot.R: dplyr::filter(!is.na(net_intervention_avoided)) %>%
> test-plot.R: ggplot(aes(x = threshold, y = net_intervention_avoided, color = label)) +
> test-plot.R: geom_line() +
> test-plot.R: coord_cartesian(ylim = c(0, 1)) +
> test-plot.R: scale_x_continuous(labels = scales::percent_format(accuracy = 1)) +
> test-plot.R: labs(x = "Threshold Probability", y = "Net reduction in interventions",
> test-plot.R: color = "") +
> test-plot.R: theme_bw()
Saving _problems/test-dca-54.R
Saving _problems/test-dca-62.R
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 40 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-dca.R:51:3'): dca() works ────────────────────────────────────
Expected `... <- NULL` not to throw any errors.
Actually got a <subscriptOutOfBoundsError> with message:
subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-dca.R:51:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─dcurves::dca(...)
8. │ └─dcurves:::.as_probability(...)
9. │ └─dcurves:::.convert_to_risk(...)
10. │ └─... %>% ...
11. ├─stats::predict(., newdata = new_df, type = "expected")
12. └─survival:::predict.coxph(., newdata = new_df, type = "expected")
13. ├─stats::model.matrix(object, data = mf)
14. └─survival:::model.matrix.coxph(object, data = mf)
15. └─stats::delete.response(object$terms)
16. └─stats (local) off(a$specials[[i]])
── Error ('test-dca.R:55:3'): dca() works ──────────────────────────────────────
<objectNotFoundError/error/condition>
Error in `eval(code, test_env)`: object 'dca_surv2' not found
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-dca.R:55:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─... %>% dplyr::pull(net_benefit)
5. ├─dplyr::pull(., net_benefit)
6. ├─dplyr::filter(., threshold == 0.25)
7. └─tibble::as_tibble(.)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 40 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘dca.Rmd’ using rmarkdown
Quitting from dca.Rmd:292-310 [unnamed-chunk-14]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/vctrs_error_subscript_oob>
Error in `select()`:
! Can't select columns that don't exist.
✖ Column `.se.fit` doesn't exist.
---
Backtrace:
▆
1. ├─... %>% select(-.fitted, -.se.fit)
2. ├─dplyr::select(., -.fitted, -.se.fit)
3. └─dplyr:::select.data.frame(., -.fitted, -.se.fit)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'dca.Rmd' failed with diagnostics:
Can't select columns that don't exist.
✖ Column `.se.fit` doesn't exist.
--- failed re-building ‘dca.Rmd’
SUMMARY: processing the following file failed:
‘dca.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc