Last updated on 2026-07-09 14:00:48 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0-9 | 5.01 | 162.54 | 167.55 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0-9 | 4.80 | 99.21 | 104.01 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0-9 | 10.00 | 200.47 | 210.47 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.0-9 | 10.00 | 131.27 | 141.27 | ERROR | |
| r-devel-windows-x86_64 | 1.0-9 | 10.00 | 123.00 | 133.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0-9 | 6.80 | 76.59 | 83.39 | ERROR | |
| r-release-linux-x86_64 | 1.0-9 | 6.21 | 211.95 | 218.16 | OK | |
| r-release-macos-arm64 | 1.0-9 | 2.00 | 62.00 | 64.00 | OK | |
| r-release-macos-x86_64 | 1.0-9 | 5.00 | 252.00 | 257.00 | OK | |
| r-release-windows-x86_64 | 1.0-9 | 9.00 | 120.00 | 129.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0-9 | 2.00 | 64.00 | 66.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0-9 | 5.00 | 244.00 | 249.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0-9 | 12.00 | 210.00 | 222.00 | ERROR |
Version: 1.0-9
Check: examples
Result: ERROR
Running examples in ‘mlmRev-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Contraception
> ### Title: Contraceptive use in Bangladesh
> ### Aliases: Contraception
> ### Keywords: datasets
>
> ### ** Examples
>
> str(Contraception)
'data.frame': 1934 obs. of 6 variables:
$ woman : Factor w/ 1934 levels "1","2","3","4",..: 1 2 3 4 5 6 7 8 9 10 ...
$ district: Factor w/ 60 levels "1","2","3","4",..: 1 1 1 1 1 1 1 1 1 1 ...
$ use : Factor w/ 2 levels "N","Y": 1 1 1 1 1 1 1 1 1 1 ...
$ livch : Factor w/ 4 levels "0","1","2","3+": 4 1 3 4 1 1 4 4 2 4 ...
$ age : num 18.44 -5.56 1.44 8.44 -13.56 ...
$ urban : Factor w/ 2 levels "N","Y": 2 2 2 2 2 2 2 2 2 2 ...
> summary(Contraception)
woman district use livch age urban
1 : 1 14 : 118 N:1175 0 :530 Min. :-13.560000 N:1372
2 : 1 1 : 117 Y: 759 1 :356 1st Qu.: -7.559900 Y: 562
3 : 1 46 : 86 2 :305 Median : -1.559900
4 : 1 25 : 67 3+:743 Mean : 0.002198
5 : 1 6 : 65 3rd Qu.: 6.440000
6 : 1 30 : 61 Max. : 19.440000
(Other):1928 (Other):1420
> (fm1 <- glmer(use ~ urban+age+livch+(1|district), Contraception, binomial))
Generalized linear mixed model fit by maximum likelihood (Laplace
Approximation) [glmerMod]
Family: binomial ( logit )
Formula: use ~ urban + age + livch + (1 | district)
Data: Contraception
AIC BIC logLik -2*log(L) df.resid
2427.616 2466.587 -1206.808 2413.616 1927
Random effects:
Groups Name Std.Dev.
district (Intercept) 0.4608
Number of obs: 1934, groups: district, 60
Fixed Effects:
(Intercept) urbanY age livch1 livch2 livch3+
-1.68965 0.73298 -0.02659 1.10913 1.37634 1.34518
> (fm2 <- glmer(use ~ urban+age+livch+(urban|district), Contraception, binomial))
Error: Downdated VtV is not positive definite
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64
Version: 1.0-9
Check: tests
Result: ERROR
Running ‘guImmun.R’ [81s/116s]
Running ‘lmerTest.R’ [10s/15s]
Running ‘versions.R’ [3s/3s]
Running the tests in ‘tests/guImmun.R’ failed.
Complete output:
> library(mlmRev)
Loading required package: lme4
Loading required package: Matrix
> options(digits=6, useFancyQuotes = FALSE)# signif.stars for once..
> fm <- glmer(immun ~ kid2p + mom25p + ord + ethn + momEd +
+ husEd + momWork + rural + pcInd81 + (1|mom) + (1|comm),
+ data = guImmun, family = binomial)
Error: Downdated VtV is not positive definite
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0-9
Check: examples
Result: ERROR
Running examples in ‘mlmRev-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Contraception
> ### Title: Contraceptive use in Bangladesh
> ### Aliases: Contraception
> ### Keywords: datasets
>
> ### ** Examples
>
> str(Contraception)
'data.frame': 1934 obs. of 6 variables:
$ woman : Factor w/ 1934 levels "1","2","3","4",..: 1 2 3 4 5 6 7 8 9 10 ...
$ district: Factor w/ 60 levels "1","2","3","4",..: 1 1 1 1 1 1 1 1 1 1 ...
$ use : Factor w/ 2 levels "N","Y": 1 1 1 1 1 1 1 1 1 1 ...
$ livch : Factor w/ 4 levels "0","1","2","3+": 4 1 3 4 1 1 4 4 2 4 ...
$ age : num 18.44 -5.56 1.44 8.44 -13.56 ...
$ urban : Factor w/ 2 levels "N","Y": 2 2 2 2 2 2 2 2 2 2 ...
> summary(Contraception)
woman district use livch age urban
1 : 1 14 : 118 N:1175 0 :530 Min. :-13.560000 N:1372
2 : 1 1 : 117 Y: 759 1 :356 1st Qu.: -7.559900 Y: 562
3 : 1 46 : 86 2 :305 Median : -1.559900
4 : 1 25 : 67 3+:743 Mean : 0.002198
5 : 1 6 : 65 3rd Qu.: 6.440000
6 : 1 30 : 61 Max. : 19.440000
(Other):1928 (Other):1420
> (fm1 <- glmer(use ~ urban+age+livch+(1|district), Contraception, binomial))
Error: Downdated VtV is not positive definite
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0-9
Check: tests
Result: ERROR
Running ‘guImmun.R’ [38s/52s]
Running ‘lmerTest.R’ [7s/11s]
Running ‘versions.R’ [2s/3s]
Running the tests in ‘tests/guImmun.R’ failed.
Complete output:
> library(mlmRev)
Loading required package: lme4
Loading required package: Matrix
> options(digits=6, useFancyQuotes = FALSE)# signif.stars for once..
> fm <- glmer(immun ~ kid2p + mom25p + ord + ethn + momEd +
+ husEd + momWork + rural + pcInd81 + (1|mom) + (1|comm),
+ data = guImmun, family = binomial)
Error: Downdated VtV is not positive definite
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0-9
Check: examples
Result: ERROR
Running examples in ‘mlmRev-Ex.R’ failed
The error most likely occurred in:
> ### Name: Contraception
> ### Title: Contraceptive use in Bangladesh
> ### Aliases: Contraception
> ### Keywords: datasets
>
> ### ** Examples
>
> str(Contraception)
'data.frame': 1934 obs. of 6 variables:
$ woman : Factor w/ 1934 levels "1","2","3","4",..: 1 2 3 4 5 6 7 8 9 10 ...
$ district: Factor w/ 60 levels "1","2","3","4",..: 1 1 1 1 1 1 1 1 1 1 ...
$ use : Factor w/ 2 levels "N","Y": 1 1 1 1 1 1 1 1 1 1 ...
$ livch : Factor w/ 4 levels "0","1","2","3+": 4 1 3 4 1 1 4 4 2 4 ...
$ age : num 18.44 -5.56 1.44 8.44 -13.56 ...
$ urban : Factor w/ 2 levels "N","Y": 2 2 2 2 2 2 2 2 2 2 ...
> summary(Contraception)
woman district use livch age urban
1 : 1 14 : 118 N:1175 0 :530 Min. :-13.560000 N:1372
2 : 1 1 : 117 Y: 759 1 :356 1st Qu.: -7.559900 Y: 562
3 : 1 46 : 86 2 :305 Median : -1.559900
4 : 1 25 : 67 3+:743 Mean : 0.002198
5 : 1 6 : 65 3rd Qu.: 6.440000
6 : 1 30 : 61 Max. : 19.440000
(Other):1928 (Other):1420
> (fm1 <- glmer(use ~ urban+age+livch+(1|district), Contraception, binomial))
Generalized linear mixed model fit by maximum likelihood (Laplace
Approximation) [glmerMod]
Family: binomial ( logit )
Formula: use ~ urban + age + livch + (1 | district)
Data: Contraception
AIC BIC logLik -2*log(L) df.resid
2427.616 2466.587 -1206.808 2413.616 1927
Random effects:
Groups Name Std.Dev.
district (Intercept) 0.4608
Number of obs: 1934, groups: district, 60
Fixed Effects:
(Intercept) urbanY age livch1 livch2 livch3+
-1.68965 0.73298 -0.02659 1.10913 1.37633 1.34518
> (fm2 <- glmer(use ~ urban+age+livch+(urban|district), Contraception, binomial))
Error: Downdated VtV is not positive definite
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0-9
Check: tests
Result: ERROR
Running ‘guImmun.R’ [80s/85s]
Running ‘lmerTest.R’ [14s/14s]
Running ‘versions.R’
Running the tests in ‘tests/guImmun.R’ failed.
Complete output:
> library(mlmRev)
Loading required package: lme4
Loading required package: Matrix
> options(digits=6, useFancyQuotes = FALSE)# signif.stars for once..
> fm <- glmer(immun ~ kid2p + mom25p + ord + ethn + momEd +
+ husEd + momWork + rural + pcInd81 + (1|mom) + (1|comm),
+ data = guImmun, family = binomial)
Error: Downdated VtV is not positive definite
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0-9
Check: tests
Result: ERROR
Running ‘guImmun.R’ [13s/14s]
Running ‘lmerTest.R’ [15s/15s]
Running ‘versions.R’
Running the tests in ‘tests/guImmun.R’ failed.
Complete output:
> library(mlmRev)
Loading required package: lme4
Loading required package: Matrix
> options(digits=6, useFancyQuotes = FALSE)# signif.stars for once..
> fm <- glmer(immun ~ kid2p + mom25p + ord + ethn + momEd +
+ husEd + momWork + rural + pcInd81 + (1|mom) + (1|comm),
+ data = guImmun, family = binomial)
Error: Downdated VtV is not positive definite
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0-9
Check: tests
Result: ERROR
Running 'guImmun.R' [6s]
Running 'lmerTest.R' [9s]
Running 'versions.R' [2s]
Running the tests in 'tests/guImmun.R' failed.
Complete output:
> library(mlmRev)
Loading required package: lme4
Loading required package: Matrix
> options(digits=6, useFancyQuotes = FALSE)# signif.stars for once..
> fm <- glmer(immun ~ kid2p + mom25p + ord + ethn + momEd +
+ husEd + momWork + rural + pcInd81 + (1|mom) + (1|comm),
+ data = guImmun, family = binomial)
Flavor: r-devel-windows-x86_64
Version: 1.0-9
Check: tests
Result: ERROR
Running ‘guImmun.R’ [5s/7s]
Running ‘lmerTest.R’ [9s/11s]
Running ‘versions.R’ [2s/3s]
Running the tests in ‘tests/guImmun.R’ failed.
Complete output:
> library(mlmRev)
Loading required package: lme4
Loading required package: Matrix
> options(digits=6, useFancyQuotes = FALSE)# signif.stars for once..
> fm <- glmer(immun ~ kid2p + mom25p + ord + ethn + momEd +
+ husEd + momWork + rural + pcInd81 + (1|mom) + (1|comm),
+ data = guImmun, family = binomial)
Error: Downdated VtV is not positive definite
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.0-9
Check: tests
Result: ERROR
Running 'guImmun.R' [8s]
Running 'lmerTest.R' [8s]
Running 'versions.R' [2s]
Running the tests in 'tests/guImmun.R' failed.
Complete output:
> library(mlmRev)
Loading required package: lme4
Loading required package: Matrix
> options(digits=6, useFancyQuotes = FALSE)# signif.stars for once..
> fm <- glmer(immun ~ kid2p + mom25p + ord + ethn + momEd +
+ husEd + momWork + rural + pcInd81 + (1|mom) + (1|comm),
+ data = guImmun, family = binomial)
Flavor: r-release-windows-x86_64
Version: 1.0-9
Check: tests
Result: ERROR
Running 'guImmun.R' [77s]
Running 'lmerTest.R' [12s]
Running 'versions.R' [3s]
Running the tests in 'tests/guImmun.R' failed.
Complete output:
> library(mlmRev)
Loading required package: lme4
Loading required package: Matrix
> options(digits=6, useFancyQuotes = FALSE)# signif.stars for once..
> fm <- glmer(immun ~ kid2p + mom25p + ord + ethn + momEd +
+ husEd + momWork + rural + pcInd81 + (1|mom) + (1|comm),
+ data = guImmun, family = binomial)
Warning message:
In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
Model failed to converge with max|grad| = 0.415505 (tol = 0.002, component 1)
See ?lme4::convergence and ?lme4::troubleshooting.
> print(fm, symbolic.cor = TRUE)
Generalized linear mixed model fit by maximum likelihood (Laplace
Approximation) [glmerMod]
Family: binomial ( logit )
Formula: immun ~ kid2p + mom25p + ord + ethn + momEd + husEd + momWork +
rural + pcInd81 + (1 | mom) + (1 | comm)
Data: guImmun
AIC BIC logLik -2*log(L) df.resid
2747.50 2849.69 -1355.75 2711.50 2141
Random effects:
Groups Name Std.Dev.
mom (Intercept) 1.149
comm (Intercept) 0.726
Number of obs: 2159, groups: mom, 1595; comm, 161
Fixed Effects:
(Intercept) kid2pY mom25pY ord23 ord46 ord7p
-0.87541 1.26561 -0.12846 -0.14579 0.16272 0.27400
ethnN ethnS momEdP momEdS husEdP husEdS
-0.16395 -0.06148 0.28183 0.27883 0.38570 0.35196
husEdU momWorkY ruralY pcInd81
-0.00276 0.25941 -0.67693 -0.85413
optimizer (Nelder_Mead) convergence code: 0 (OK) ; 0 optimizer warnings; 1 lme4 warnings
>
> fm.h <- update(fm, ~ . - husEd)
Flavor: r-oldrel-windows-x86_64