Last updated on 2026-09-12 13:50:54 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.2 | 8.97 | 216.17 | 225.14 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.2 | 6.16 | 154.03 | 160.19 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.3.2 | 7.00 | 132.02 | 139.02 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.2 | 140.13 | ERROR | |||
| r-devel-windows-x86_64 | 0.3.2 | 11.00 | 219.00 | 230.00 | OK | |
| r-patched-linux-x86_64 | 0.3.2 | 9.59 | 203.99 | 213.58 | OK | |
| r-release-linux-x86_64 | 0.3.2 | 7.29 | 207.49 | 214.78 | OK | |
| r-release-macos-arm64 | 0.3.2 | 3.00 | 52.00 | 55.00 | OK | |
| r-release-macos-x86_64 | 0.3.2 | 7.00 | 213.00 | 220.00 | OK | |
| r-release-windows-x86_64 | 0.3.2 | 12.00 | 207.00 | 219.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.2 | 2.00 | 89.00 | 91.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.2 | 7.00 | 252.00 | 259.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.2 | 18.00 | 266.00 | 284.00 | OK |
Version: 0.3.2
Check: examples
Result: ERROR
Running examples in ‘nlmixr2lib-Ex.R’ failed
The error most likely occurred in:
> ### Name: addEta
> ### Title: Add random effects to a model
> ### Aliases: addEta
>
> ### ** Examples
>
> library(rxode2)
rxode2 5.1.6 using 2 threads (see ?getRxThreads)
no cache: create with `rxCreateCache()`
> readModelDb("PK_1cmt") |> addEta("ka")
→ Adding eta to lka instead of ka due to mu-referencing
ℹ parameter labels from comments are typically ignored in non-interactive mode
ℹ Need to run with the source intact to parse comments
ℹ promote `etaKa` to between subject variability with initial estimate 0.1
Error in rbind(deparse.level, ...) :
numbers of columns of arguments do not match
Calls: addEta ... .iniHandleFixOrUnfixEqual -> .addVariableToIniDf -> assign -> rbind -> rbind
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [47s/54s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(nlmixr2lib)
>
> test_check("nlmixr2lib")
Starting 2 test processes.
Saving _problems/test-addEta-4.R
Saving _problems/test-addEta-102.R
Saving _problems/test-addEta-121.R
Saving _problems/test-addEta-152.R
Saving _problems/test-addEta-181.R
Saving _problems/test-addEta-206.R
Saving _problems/test-addResErr-5.R
Saving _problems/test-addResErr-57.R
Saving _problems/test-addResErr-66.R
Saving _problems/test-addResErr-85.R
Saving _problems/test-addResErr-104.R
Saving _problems/test-addResErr-190.R
> test-convertKinR0.R: i add covariate `k`
> test-convertKinR0.R: ! remove population parameter `uR0`
> test-convertKinR0.R: i add covariate `R`
Saving _problems/test-modellib-6.R
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 369 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-addEta.R:4:3'): addEta named parameter ─────────────────────────
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(modelUpdate <- addEta(model, eta = "lka")) at test-addEta.R:4:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::addEta(model, eta = "lka")
4. ├─base::do.call(rxode2::ini, iniArgs)
5. ├─rxode2 (local) `<fn>`(`<fn>`, etaLka ~ 0.1)
6. └─rxode2:::ini.default(`<fn>`, etaLka ~ 0.1)
7. └─base::lapply(...)
8. └─rxode2 (local) FUN(X[[i]], ...)
9. └─rxode2::.iniHandleLine(...)
10. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addEta.R:102:3'): addEta mu-ref parameter ──────────────────────
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(modelUpdate <- addEta(model, eta = "ka")) at test-addEta.R:102:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::addEta(model, eta = "ka")
4. ├─base::do.call(rxode2::ini, iniArgs)
5. ├─rxode2 (local) `<fn>`(`<fn>`, etaKa ~ 0.1)
6. └─rxode2:::ini.default(`<fn>`, etaKa ~ 0.1)
7. └─base::lapply(...)
8. └─rxode2 (local) FUN(X[[i]], ...)
9. └─rxode2::.iniHandleLine(...)
10. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addEta.R:121:3'): addEta multiple parameter, mu-ref and not ────
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-addEta.R:121:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::addEta(model, eta = c("lvc", "ka"))
4. ├─base::do.call(rxode2::ini, iniArgs)
5. ├─rxode2 (local) `<fn>`(`<fn>`, etaLvc ~ 0.1, etaKa ~ 0.1)
6. └─rxode2:::ini.default(`<fn>`, etaLvc ~ 0.1, etaKa ~ 0.1)
7. └─base::lapply(...)
8. └─rxode2 (local) FUN(X[[i]], ...)
9. └─rxode2::.iniHandleLine(...)
10. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addEta.R:152:3'): addEta named parameter ───────────────────────
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(modelUpdate <- addEta(model, eta = "lka")) at test-addEta.R:152:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::addEta(model, eta = "lka")
4. ├─base::do.call(rxode2::ini, iniArgs)
5. ├─rxode2 (local) `<fn>`(`<fn>`, etaLka ~ 0.1)
6. └─rxode2:::ini.default(`<fn>`, etaLka ~ 0.1)
7. └─base::lapply(...)
8. └─rxode2 (local) FUN(X[[i]], ...)
9. └─rxode2::.iniHandleLine(...)
10. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addEta.R:181:3'): compiled ui object ───────────────────────────
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(modelUpdate <- addEta(model, eta = "lka")) at test-addEta.R:181:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::addEta(model, eta = "lka")
4. ├─base::do.call(rxode2::ini, iniArgs)
5. ├─rxode2 (local) `<fn>`(`<fn>`, etaLka ~ 0.1)
6. └─rxode2:::ini.default(`<fn>`, etaLka ~ 0.1)
7. └─base::lapply(...)
8. └─rxode2 (local) FUN(X[[i]], ...)
9. └─rxode2::.iniHandleLine(...)
10. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addEta.R:204:3'): addEta() correctly adds IIV when there is a covariate (#27) ──
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(newEtaRemap <- addEta(model, "cl", priorName = FALSE)) at test-addEta.R:204:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::addEta(model, "cl", priorName = FALSE)
4. ├─base::do.call(rxode2::ini, iniArgs)
5. ├─rxode2 (local) `<fn>`(`<fn>`, etaLcl ~ 0.1)
6. └─rxode2:::ini.default(`<fn>`, etaLcl ~ 0.1)
7. └─base::lapply(...)
8. └─rxode2 (local) FUN(X[[i]], ...)
9. └─rxode2::.iniHandleLine(...)
10. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addResErr.R:5:3'): addResErr with each expected residual distribution and combinations ──
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-addResErr.R:5:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::as.function(addResErr(model, reserr = "addSd"))
4. └─nlmixr2lib::addResErr(model, reserr = "addSd")
5. ├─base::do.call(rxode2::model, list(modelUi, str2lang(newErrLine)))
6. ├─rxode2 (local) `<fn>`(`<rxUi>`, Cc ~ add(CcAddSd))
7. └─rxode2:::model.rxUi(`<rxUi>`, Cc ~ add(CcAddSd))
8. └─rxode2::.modelHandleModelLines(...)
9. └─base::lapply(...)
10. └─rxode2 (local) FUN(X[[i]], ...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addResErr.R:57:3'): addResErr with named numeric values sets the reserr ──
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-addResErr.R:57:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::as.function(addResErr(model, reserr = c(addSd = 10)))
4. └─nlmixr2lib::addResErr(model, reserr = c(addSd = 10))
5. ├─base::do.call(rxode2::model, list(modelUi, str2lang(newErrLine)))
6. ├─rxode2 (local) `<fn>`(`<rxUi>`, Cc ~ add(CcAddSd))
7. └─rxode2:::model.rxUi(`<rxUi>`, Cc ~ add(CcAddSd))
8. └─rxode2::.modelHandleModelLines(...)
9. └─base::lapply(...)
10. └─rxode2 (local) FUN(X[[i]], ...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addResErr.R:66:3'): addResErr with des model, changing to additive error ──
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-addResErr.R:66:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::as.function(addResErr(model, reserr = "addSd"))
4. └─nlmixr2lib::addResErr(model, reserr = "addSd")
5. ├─base::do.call(rxode2::model, list(modelUi, str2lang(newErrLine)))
6. ├─rxode2 (local) `<fn>`(`<rxUi>`, Cc ~ add(CcAddSd))
7. └─rxode2:::model.rxUi(`<rxUi>`, Cc ~ add(CcAddSd))
8. └─rxode2::.modelHandleModelLines(...)
9. └─base::lapply(...)
10. └─rxode2 (local) FUN(X[[i]], ...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addResErr.R:85:3'): addResErr with linCmt model, changing to additive error ──
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-addResErr.R:85:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::as.function(addResErr(model, reserr = "addSd"))
4. └─nlmixr2lib::addResErr(model, reserr = "addSd")
5. ├─base::do.call(rxode2::model, list(modelUi, str2lang(newErrLine)))
6. ├─rxode2 (local) `<fn>`(`<rxUi>`, Cc ~ add(CcAddSd))
7. └─rxode2:::model.rxUi(`<rxUi>`, Cc ~ add(CcAddSd))
8. └─rxode2::.modelHandleModelLines(...)
9. └─base::lapply(...)
10. └─rxode2 (local) FUN(X[[i]], ...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addResErr.R:104:3'): addResErr with des model, changing to additive and proportional error ──
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-addResErr.R:104:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::as.function(addResErr(model, reserr = c("addSd", "propSd")))
4. └─nlmixr2lib::addResErr(model, reserr = c("addSd", "propSd"))
5. ├─base::do.call(rxode2::model, list(modelUi, str2lang(newErrLine)))
6. ├─rxode2 (local) `<fn>`(`<rxUi>`, Cc ~ add(CcAddSd) + prop(CcPropSd))
7. └─rxode2:::model.rxUi(`<rxUi>`, Cc ~ add(CcAddSd) + prop(CcPropSd))
8. └─rxode2::.modelHandleModelLines(...)
9. └─base::lapply(...)
10. └─rxode2 (local) FUN(X[[i]], ...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addResErr.R:187:3'): addResErr with multiple endpoints ─────────
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(addResErr(model, reserr = "addSd", endpoint = "e")) at test-addResErr.R:187:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::addResErr(model, reserr = "addSd", endpoint = "e")
4. ├─base::do.call(rxode2::model, list(modelUi, str2lang(newErrLine)))
5. ├─rxode2 (local) `<fn>`(`<rxUi>`, e ~ add(eAddSd))
6. └─rxode2:::model.rxUi(`<rxUi>`, e ~ add(eAddSd))
7. └─rxode2::.modelHandleModelLines(...)
8. └─base::lapply(...)
9. └─rxode2 (local) FUN(X[[i]], ...)
10. └─rxode2:::.addVariableToIniDf(...)
11. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
12. └─base::rbind(.iniDf, .extra)
13. └─base::rbind(deparse.level, ...)
── Error ('test-modellib.R:6:3'): modellib ─────────────────────────────────────
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-modellib.R:6:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::modellib(name = "PK_1cmt", eta = c("ka", "vc"), reserr = "addSd")
4. └─nlmixr2lib::addEta(modr, eta = eta)
5. ├─base::do.call(rxode2::ini, iniArgs)
6. ├─rxode2 (local) `<fn>`(`<fn>`, etaKa ~ 0.1, etaVc ~ 0.1)
7. └─rxode2:::ini.default(`<fn>`, etaKa ~ 0.1, etaVc ~ 0.1)
8. └─base::lapply(...)
9. └─rxode2 (local) FUN(X[[i]], ...)
10. └─rxode2::.iniHandleLine(...)
11. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
12. └─rxode2:::.addVariableToIniDf(...)
13. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
14. └─base::rbind(.iniDf, .extra)
15. └─base::rbind(deparse.level, ...)
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 369 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [44s/28s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(nlmixr2lib)
>
> test_check("nlmixr2lib")
Starting 2 test processes.
Saving _problems/test-addEta-4.R
Saving _problems/test-addEta-102.R
Saving _problems/test-addEta-121.R
Saving _problems/test-addEta-152.R
Saving _problems/test-addEta-181.R
Saving _problems/test-addEta-206.R
Saving _problems/test-addResErr-5.R
Saving _problems/test-addResErr-57.R
Saving _problems/test-addResErr-66.R
Saving _problems/test-addResErr-85.R
Saving _problems/test-addResErr-104.R
Saving _problems/test-addResErr-190.R
> test-convertKinR0.R: i add covariate `k`
> test-convertKinR0.R: ! remove population parameter `uR0`
> test-convertKinR0.R: i add covariate `R`
Saving _problems/test-modellib-6.R
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 369 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-addEta.R:4:3'): addEta named parameter ─────────────────────────
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(modelUpdate <- addEta(model, eta = "lka")) at test-addEta.R:4:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::addEta(model, eta = "lka")
4. ├─base::do.call(rxode2::ini, iniArgs)
5. ├─rxode2 (local) `<fn>`(`<fn>`, etaLka ~ 0.1)
6. └─rxode2:::ini.default(`<fn>`, etaLka ~ 0.1)
7. └─base::lapply(...)
8. └─rxode2 (local) FUN(X[[i]], ...)
9. └─rxode2::.iniHandleLine(...)
10. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addEta.R:102:3'): addEta mu-ref parameter ──────────────────────
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(modelUpdate <- addEta(model, eta = "ka")) at test-addEta.R:102:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::addEta(model, eta = "ka")
4. ├─base::do.call(rxode2::ini, iniArgs)
5. ├─rxode2 (local) `<fn>`(`<fn>`, etaKa ~ 0.1)
6. └─rxode2:::ini.default(`<fn>`, etaKa ~ 0.1)
7. └─base::lapply(...)
8. └─rxode2 (local) FUN(X[[i]], ...)
9. └─rxode2::.iniHandleLine(...)
10. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addEta.R:121:3'): addEta multiple parameter, mu-ref and not ────
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-addEta.R:121:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::addEta(model, eta = c("lvc", "ka"))
4. ├─base::do.call(rxode2::ini, iniArgs)
5. ├─rxode2 (local) `<fn>`(`<fn>`, etaLvc ~ 0.1, etaKa ~ 0.1)
6. └─rxode2:::ini.default(`<fn>`, etaLvc ~ 0.1, etaKa ~ 0.1)
7. └─base::lapply(...)
8. └─rxode2 (local) FUN(X[[i]], ...)
9. └─rxode2::.iniHandleLine(...)
10. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addEta.R:152:3'): addEta named parameter ───────────────────────
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(modelUpdate <- addEta(model, eta = "lka")) at test-addEta.R:152:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::addEta(model, eta = "lka")
4. ├─base::do.call(rxode2::ini, iniArgs)
5. ├─rxode2 (local) `<fn>`(`<fn>`, etaLka ~ 0.1)
6. └─rxode2:::ini.default(`<fn>`, etaLka ~ 0.1)
7. └─base::lapply(...)
8. └─rxode2 (local) FUN(X[[i]], ...)
9. └─rxode2::.iniHandleLine(...)
10. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addEta.R:181:3'): compiled ui object ───────────────────────────
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(modelUpdate <- addEta(model, eta = "lka")) at test-addEta.R:181:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::addEta(model, eta = "lka")
4. ├─base::do.call(rxode2::ini, iniArgs)
5. ├─rxode2 (local) `<fn>`(`<fn>`, etaLka ~ 0.1)
6. └─rxode2:::ini.default(`<fn>`, etaLka ~ 0.1)
7. └─base::lapply(...)
8. └─rxode2 (local) FUN(X[[i]], ...)
9. └─rxode2::.iniHandleLine(...)
10. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addEta.R:204:3'): addEta() correctly adds IIV when there is a covariate (#27) ──
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(newEtaRemap <- addEta(model, "cl", priorName = FALSE)) at test-addEta.R:204:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::addEta(model, "cl", priorName = FALSE)
4. ├─base::do.call(rxode2::ini, iniArgs)
5. ├─rxode2 (local) `<fn>`(`<fn>`, etaLcl ~ 0.1)
6. └─rxode2:::ini.default(`<fn>`, etaLcl ~ 0.1)
7. └─base::lapply(...)
8. └─rxode2 (local) FUN(X[[i]], ...)
9. └─rxode2::.iniHandleLine(...)
10. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addResErr.R:5:3'): addResErr with each expected residual distribution and combinations ──
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-addResErr.R:5:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::as.function(addResErr(model, reserr = "addSd"))
4. └─nlmixr2lib::addResErr(model, reserr = "addSd")
5. ├─base::do.call(rxode2::model, list(modelUi, str2lang(newErrLine)))
6. ├─rxode2 (local) `<fn>`(`<rxUi>`, Cc ~ add(CcAddSd))
7. └─rxode2:::model.rxUi(`<rxUi>`, Cc ~ add(CcAddSd))
8. └─rxode2::.modelHandleModelLines(...)
9. └─base::lapply(...)
10. └─rxode2 (local) FUN(X[[i]], ...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addResErr.R:57:3'): addResErr with named numeric values sets the reserr ──
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-addResErr.R:57:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::as.function(addResErr(model, reserr = c(addSd = 10)))
4. └─nlmixr2lib::addResErr(model, reserr = c(addSd = 10))
5. ├─base::do.call(rxode2::model, list(modelUi, str2lang(newErrLine)))
6. ├─rxode2 (local) `<fn>`(`<rxUi>`, Cc ~ add(CcAddSd))
7. └─rxode2:::model.rxUi(`<rxUi>`, Cc ~ add(CcAddSd))
8. └─rxode2::.modelHandleModelLines(...)
9. └─base::lapply(...)
10. └─rxode2 (local) FUN(X[[i]], ...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addResErr.R:66:3'): addResErr with des model, changing to additive error ──
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-addResErr.R:66:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::as.function(addResErr(model, reserr = "addSd"))
4. └─nlmixr2lib::addResErr(model, reserr = "addSd")
5. ├─base::do.call(rxode2::model, list(modelUi, str2lang(newErrLine)))
6. ├─rxode2 (local) `<fn>`(`<rxUi>`, Cc ~ add(CcAddSd))
7. └─rxode2:::model.rxUi(`<rxUi>`, Cc ~ add(CcAddSd))
8. └─rxode2::.modelHandleModelLines(...)
9. └─base::lapply(...)
10. └─rxode2 (local) FUN(X[[i]], ...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addResErr.R:85:3'): addResErr with linCmt model, changing to additive error ──
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-addResErr.R:85:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::as.function(addResErr(model, reserr = "addSd"))
4. └─nlmixr2lib::addResErr(model, reserr = "addSd")
5. ├─base::do.call(rxode2::model, list(modelUi, str2lang(newErrLine)))
6. ├─rxode2 (local) `<fn>`(`<rxUi>`, Cc ~ add(CcAddSd))
7. └─rxode2:::model.rxUi(`<rxUi>`, Cc ~ add(CcAddSd))
8. └─rxode2::.modelHandleModelLines(...)
9. └─base::lapply(...)
10. └─rxode2 (local) FUN(X[[i]], ...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addResErr.R:104:3'): addResErr with des model, changing to additive and proportional error ──
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-addResErr.R:104:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::as.function(addResErr(model, reserr = c("addSd", "propSd")))
4. └─nlmixr2lib::addResErr(model, reserr = c("addSd", "propSd"))
5. ├─base::do.call(rxode2::model, list(modelUi, str2lang(newErrLine)))
6. ├─rxode2 (local) `<fn>`(`<rxUi>`, Cc ~ add(CcAddSd) + prop(CcPropSd))
7. └─rxode2:::model.rxUi(`<rxUi>`, Cc ~ add(CcAddSd) + prop(CcPropSd))
8. └─rxode2::.modelHandleModelLines(...)
9. └─base::lapply(...)
10. └─rxode2 (local) FUN(X[[i]], ...)
11. └─rxode2:::.addVariableToIniDf(...)
12. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
13. └─base::rbind(.iniDf, .extra)
14. └─base::rbind(deparse.level, ...)
── Error ('test-addResErr.R:187:3'): addResErr with multiple endpoints ─────────
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(addResErr(model, reserr = "addSd", endpoint = "e")) at test-addResErr.R:187:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::addResErr(model, reserr = "addSd", endpoint = "e")
4. ├─base::do.call(rxode2::model, list(modelUi, str2lang(newErrLine)))
5. ├─rxode2 (local) `<fn>`(`<rxUi>`, e ~ add(eAddSd))
6. └─rxode2:::model.rxUi(`<rxUi>`, e ~ add(eAddSd))
7. └─rxode2::.modelHandleModelLines(...)
8. └─base::lapply(...)
9. └─rxode2 (local) FUN(X[[i]], ...)
10. └─rxode2:::.addVariableToIniDf(...)
11. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
12. └─base::rbind(.iniDf, .extra)
13. └─base::rbind(deparse.level, ...)
── Error ('test-modellib.R:6:3'): modellib ─────────────────────────────────────
Error in `rbind(deparse.level, ...)`: numbers of columns of arguments do not match
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-modellib.R:6:3
2. │ └─base::withCallingHandlers(...)
3. └─nlmixr2lib::modellib(name = "PK_1cmt", eta = c("ka", "vc"), reserr = "addSd")
4. └─nlmixr2lib::addEta(modr, eta = eta)
5. ├─base::do.call(rxode2::ini, iniArgs)
6. ├─rxode2 (local) `<fn>`(`<fn>`, etaKa ~ 0.1, etaVc ~ 0.1)
7. └─rxode2:::ini.default(`<fn>`, etaKa ~ 0.1, etaVc ~ 0.1)
8. └─base::lapply(...)
9. └─rxode2 (local) FUN(X[[i]], ...)
10. └─rxode2::.iniHandleLine(...)
11. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
12. └─rxode2:::.addVariableToIniDf(...)
13. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
14. └─base::rbind(.iniDf, .extra)
15. └─base::rbind(deparse.level, ...)
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 369 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc