Last updated on 2026-10-24 12:51:43 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.3 | 4.73 | 325.09 | 329.82 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.3 | 3.39 | 97.89 | 101.28 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.3 | 226.69 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.3 | 210.12 | OK | |||
| r-devel-windows-x86_64 | 0.3.3 | 9.00 | 295.00 | 304.00 | OK | |
| r-patched-linux-x86_64 | 0.3.3 | 4.65 | 305.56 | 310.21 | OK | |
| r-release-linux-x86_64 | 0.3.3 | 4.80 | 305.48 | 310.28 | OK | |
| r-release-macos-arm64 | 0.3.3 | 1.00 | 65.00 | 66.00 | OK | |
| r-release-macos-x86_64 | 0.3.3 | 4.00 | 257.00 | 261.00 | OK | |
| r-release-windows-x86_64 | 0.3.3 | 8.00 | 277.00 | 285.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.3 | 1.00 | 72.00 | 73.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.3 | 4.00 | 272.00 | 276.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.3 | 10.00 | 410.00 | 420.00 | OK |
Version: 0.3.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/30s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> # Sys.setenv("R_TESTS" = "")
> library(testthat)
> library(psm3mkv)
>
> test_check("psm3mkv")
Saving _problems/test-basics-33.R
Saving _problems/test-fitting-spl-27.R
Saving _problems/test-lhoods-101.R
[ FAIL 3 | WARN 0 | SKIP 1 | PASS 216 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-discrmd.R:4:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-basics.R:29:1'): (code run outside of `test_that()`) ───────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─flexsurv::flexsurvspline(...) at test-basics.R:29:1
2. ├─base::do.call("flexsurvreg", args)
3. └─flexsurv::flexsurvreg(...)
4. └─dlist$inits(t = wt, mf = m, mml = mml, aux = inits.aux)
5. ├─survival::survfit(cox)
6. └─survival:::survfit.coxph(cox)
7. └─survival:::model.matrix.coxph(object, data = mf)
8. └─stats::delete.response(object$terms)
9. └─stats (local) off(a$specials[[i]])
── Error ('test-fitting-spl.R:19:1'): (code run outside of `test_that()`) ──────
<purrr_error_indexed/rlang_error/error/condition>
Error in `purrr::map2(seq(knot_set), seq(scale_set), ~flexsurv::flexsurvspline(formula = survival::Surv(time = bosonc$pfs.durn, event = bosonc$pfs.flag) ~ 1, k = knot_set[.x], scale = scale_set[.y]))`: i In index: 1.
Caused by error in `a$specials[[i]]`:
! subscript out of bounds
Backtrace:
▆
1. ├─purrr::map2(...) at test-fitting-spl.R:19:1
2. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
3. │ ├─purrr:::with_indexed_errors(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ ├─purrr:::call_with_cleanup(...)
6. │ └─psm3mkv (local) .f(.x[[i]], .y[[i]], ...)
7. │ └─flexsurv::flexsurvspline(...)
8. │ ├─base::do.call("flexsurvreg", args)
9. │ └─flexsurv::flexsurvreg(...)
10. │ └─dlist$inits(t = wt, mf = m, mml = mml, aux = inits.aux)
11. │ ├─survival::survfit(cox)
12. │ └─survival:::survfit.coxph(cox)
13. │ └─survival:::model.matrix.coxph(object, data = mf)
14. │ └─stats::delete.response(object$terms)
15. │ └─stats (local) off(a$specials[[i]])
16. └─purrr (local) `<fn>`(`<sbscOOBE>`)
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
── Error ('test-lhoods.R:101:1'): (code run outside of `test_that()`) ──────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `purrr::map_chr(fittable$id, ~reglist[[.x]]$result$dlist$name)`: i In index: 1.
Caused by error:
! Result must be length 1, not 0.
Backtrace:
▆
1. ├─psm3mkv::find_bestfit(af2$ppd, "aic") at test-lhoods.R:101:1
2. │ └─purrr::map_chr(fittable$id, ~reglist[[.x]]$result$dlist$name)
3. │ └─purrr:::map_("character", .x, .f, ..., .progress = .progress)
4. │ ├─purrr:::with_indexed_errors(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─purrr:::call_with_cleanup(...)
7. └─base::.handleSimpleError(...)
8. └─purrr (local) h(simpleError(msg, call))
9. └─cli::cli_abort(...)
10. └─rlang::abort(...)
[ FAIL 3 | WARN 0 | SKIP 1 | PASS 216 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘example.Rmd’ using rmarkdown
Quitting from example.Rmd:113-124 [find_bestfit]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/purrr_error_indexed>
Error in `purrr::map_chr()`:
ℹ In index: 1.
Caused by error:
! Result must be length 1, not 0.
---
Backtrace:
▆
1. └─psm3mkv::find_bestfit(allfits_spl$ppd, "aic")
2. └─purrr::map_chr(fittable$id, ~reglist[[.x]]$result$dlist$name)
3. └─purrr:::map_("character", .x, .f, ..., .progress = .progress)
4. ├─purrr:::with_indexed_errors(...)
5. │ └─base::withCallingHandlers(...)
6. └─purrr:::call_with_cleanup(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'example.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error:
! Result must be length 1, not 0.
--- failed re-building ‘example.Rmd’
--- re-building ‘mortality-adjustments.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘mortality-adjustments.Rmd’
SUMMARY: processing the following file failed:
‘example.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc