Last updated on 2026-10-24 01:51:43 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.2 | 10.59 | 248.08 | 258.67 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.2 | 8.36 | 98.01 | 106.37 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.2 | 11.00 | 202.23 | 213.23 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.2 | 173.16 | OK | |||
| r-devel-windows-x86_64 | 1.0.2 | 14.00 | 256.00 | 270.00 | OK | |
| r-patched-linux-x86_64 | 1.0.2 | 10.16 | 231.04 | 241.20 | OK | |
| r-release-linux-x86_64 | 1.0.2 | 9.34 | 227.67 | 237.01 | OK | |
| r-release-macos-arm64 | 1.0.2 | 3.00 | 58.00 | 61.00 | OK | |
| r-release-macos-x86_64 | 1.0.2 | 8.00 | 256.00 | 264.00 | OK | |
| r-release-windows-x86_64 | 1.0.2 | 14.00 | 243.00 | 257.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.2 | 3.00 | 74.00 | 77.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.2 | 8.00 | 362.00 | 370.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.2 | 16.00 | 318.00 | 334.00 | OK |
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [23s/29s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(recforest)
>
> test_check("recforest")
Saving _problems/test-golden_master-5.R
since n_bootstrap is not provided, it is set to 2/3 of the sample size: 269
Saving _problems/test-s3_recforest-30.R
Saving _problems/test-train_forest-184.R
Using sequential processing for training
training tree 1/2
[1] "creating terminal node #1"
Saving _problems/test-train_forest-277.R
since n_bootstrap is not provided, it is set to 2/3 of the sample size: 269
Saving _problems/test-train_forest_utils-67.R
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 27 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-golden_master.R:3:5'): golden_master works ─────────────────────
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─base::source("golden_master.R")
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─recforest::train_forest(...)
6. ├─base::do.call(what = loop_fun, args = args)
7. └─base (local) `<fn>`(X = `<int>`, FUN = `<fn>`)
8. └─recforest (local) FUN(X[[i]], ...)
9. └─recforest:::train_tree_and_calculate_metrics(...)
10. └─recforest:::mse_2(true_vals)
11. └─recforest:::np_estimate(...)
12. ├─survival::survfit(NPfit, type = "aalen")
13. └─survival:::survfit.coxph(NPfit, type = "aalen")
14. └─survival:::model.matrix.coxph(object, data = mf)
15. └─stats::delete.response(object$terms)
16. └─stats (local) off(a$specials[[i]])
── Error ('test-s3_recforest.R:13:5'): s3 methods for recforest works ──────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─withr::with_seed(...) at test-s3_recforest.R:5:3
2. │ └─withr::with_preserve_seed(...)
3. ├─base::suppressWarnings(...) at test-s3_recforest.R:13:5
4. │ └─base::withCallingHandlers(...)
5. └─recforest::train_forest(...)
6. ├─base::do.call(what = loop_fun, args = args)
7. └─base (local) `<fn>`(X = `<int>`, FUN = `<fn>`)
8. └─recforest (local) FUN(X[[i]], ...)
9. └─recforest:::train_tree_and_calculate_metrics(...)
10. └─recforest:::mse_2(true_vals)
11. └─recforest:::np_estimate(...)
12. ├─survival::survfit(NPfit, type = "aalen")
13. └─survival:::survfit.coxph(NPfit, type = "aalen")
14. └─survival:::model.matrix.coxph(object, data = mf)
15. └─stats::delete.response(object$terms)
16. └─stats (local) off(a$specials[[i]])
── Error ('test-train_forest.R:164:5'): train_forest and predict_forest works with method NAa ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─withr::with_seed(...) at test-train_forest.R:154:3
2. │ └─withr::with_preserve_seed(...)
3. ├─testthat::expect_message(...) at test-train_forest.R:164:5
4. │ └─testthat:::expect_condition_matching_(...)
5. │ └─testthat:::quasi_capture(...)
6. │ ├─testthat (local) .capture(...)
7. │ │ └─base::withCallingHandlers(...)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. ├─base::suppressWarnings(...)
10. │ └─base::withCallingHandlers(...)
11. └─recforest::train_forest(...)
12. ├─base::do.call(what = loop_fun, args = args)
13. └─base (local) `<fn>`(X = `<int>`, FUN = `<fn>`)
14. └─recforest (local) FUN(X[[i]], ...)
15. └─recforest:::train_tree_and_calculate_metrics(...)
16. └─recforest:::mse_2(true_vals)
17. └─recforest:::np_estimate(...)
18. ├─survival::survfit(NPfit, type = "aalen")
19. └─survival:::survfit.coxph(NPfit, type = "aalen")
20. └─survival:::model.matrix.coxph(object, data = mf)
21. └─stats::delete.response(object$terms)
22. └─stats (local) off(a$specials[[i]])
── Error ('test-train_forest.R:259:5'): train_forest and predict_forest works with method GL ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─withr::with_seed(...) at test-train_forest.R:251:3
2. │ └─withr::with_preserve_seed(...)
3. ├─base::suppressWarnings(...) at test-train_forest.R:259:5
4. │ └─base::withCallingHandlers(...)
5. └─recforest::train_forest(...)
6. ├─base::do.call(what = loop_fun, args = args)
7. └─base (local) `<fn>`(X = `<int>`, FUN = `<fn>`)
8. └─recforest (local) FUN(X[[i]], ...)
9. └─recforest:::train_tree_and_calculate_metrics(...)
10. └─recforest:::mse_2(true_vals)
11. └─recforest:::np_estimate(...)
12. ├─survival::survfit(NPfit, type = "aalen")
13. └─survival:::survfit.coxph(NPfit, type = "aalen")
14. └─survival:::model.matrix.coxph(object, data = mf)
15. └─stats::delete.response(object$terms)
16. └─stats (local) off(a$specials[[i]])
── Error ('test-train_forest_utils.R:50:5'): get_n_nodes works ─────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─withr::with_seed(...) at test-train_forest_utils.R:42:3
2. │ └─withr::with_preserve_seed(...)
3. ├─base::suppressWarnings(...) at test-train_forest_utils.R:50:5
4. │ └─base::withCallingHandlers(...)
5. └─recforest::train_forest(...)
6. ├─base::do.call(what = loop_fun, args = args)
7. └─base (local) `<fn>`(X = `<int>`, FUN = `<fn>`)
8. └─recforest (local) FUN(X[[i]], ...)
9. └─recforest:::train_tree_and_calculate_metrics(...)
10. └─recforest:::mse_2(true_vals)
11. └─recforest:::np_estimate(...)
12. ├─survival::survfit(NPfit, type = "aalen")
13. └─survival:::survfit.coxph(NPfit, type = "aalen")
14. └─survival:::model.matrix.coxph(object, data = mf)
15. └─stats::delete.response(object$terms)
16. └─stats (local) off(a$specials[[i]])
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 27 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘explain.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘explain.Rmd’
--- re-building ‘method.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘method.Rmd’
--- re-building ‘predict.Rmd’ using rmarkdown
Quitting from predict.Rmd:49-69 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. └─recforest::train_forest(...)
2. ├─base::do.call(what = loop_fun, args = args)
3. └─base (local) `<fn>`(X = `<int>`, FUN = `<fn>`)
4. └─recforest (local) FUN(X[[i]], ...)
5. └─recforest:::train_tree_and_calculate_metrics(...)
6. └─recforest:::mse_2(true_vals)
7. └─recforest:::np_estimate(...)
8. ├─survival::survfit(NPfit, type = "aalen")
9. └─survival:::survfit.coxph(NPfit, type = "aalen")
10. └─survival:::model.matrix.coxph(object, data = mf)
11. └─stats::delete.response(object$terms)
12. └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'predict.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘predict.Rmd’
SUMMARY: processing the following file failed:
‘predict.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc