Last updated on 2026-09-11 01:50:42 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 14.09 | 142.84 | 156.93 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 10.37 | 101.29 | 111.66 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 94.40 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 9.00 | 93.66 | 102.66 | OK | |
| r-devel-windows-x86_64 | 0.1.0 | 18.00 | 176.00 | 194.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 14.99 | 135.83 | 150.82 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 14.03 | 135.06 | 149.09 | OK | |
| r-release-macos-arm64 | 0.1.0 | 3.00 | 65.00 | 68.00 | OK | |
| r-release-macos-x86_64 | 0.1.0 | 10.00 | 173.00 | 183.00 | OK | |
| r-release-windows-x86_64 | 0.1.0 | 16.00 | 180.00 | 196.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.0 | 9.00 | 148.00 | 157.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.0 | 24.00 | 225.00 | 249.00 | OK |
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Comparing_Search_Strategies_with_searchAnalyzeR.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘Comparing_Search_Strategies_with_searchAnalyzeR.Rmd’
--- re-building ‘Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd’ using rmarkdown
Quitting from Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd:106-117 [execute-search]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! HTTP failure: 500
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN" "http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
<html>
<head>
<title>NCBI/eutils101 - WWW Error 500 Diagnostic</title>
<style type="text/css">
h1.error {color: red; font-size: 40pt}
div.diags {text-indent: 0.5in }
</style>
</head>
<body>
<h1>Server Error</h1>
<p>Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:</p>
<p>
pubmed@nlm.nih.gov - for problems with PubMed<br/>
webadmin@ncbi.nlm.nih.gov - for problems with other services<br/>
</p>
<p>Thank you for your assistance. We will try to fix the
problem as soon as possible.
</p>
<hr/>
<p>
Diagnostic Information:</p>
<div class="diags">Error: 500</div>
<div class="diags">URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e s e a r c h . f c g i ? d b = p u b m e d & a m p ; t e r m = 2 8 2 0 2 2 l o n g 2 0 c o v i d 2 2 5 B T i t l e 2 F A b s t r a c t 5 D 2 0 O R 2 0 2 2 p o s t - c o v i d 2 0 s y n d r o m e 2 2 5 B T i t l e 2 F A b s t r a c t 5 D 2 0 O R 2 0 2 2 c o v i d - 1 9 2 0 s e q u e l a e 2 2 5 B T i t l e 2 F A b s t r a c t 5 D 2 0 O R 2 0 2 2 p o s t - a c u t e 2 0 c o v i d - 1 9 2 2 5 B T i t l e 2 F A b s t r a c t 5 D 2 0 O R 2 0 2 2 p e r s i s t e n t 2 0 c o v i d 2 0 s y m p t o m s 2 2 5 B T i t l e 2 F A b s t r a c t 5 D 2 0 2 9 2 0 A N D 2 0 2 8 2 2 2 0 2 0 2 F 0 1 2 F 0 1 2 2 5 B D a t e 2 0 - 2 0 P u b l i c a t i o n 5 D 2 0 3 A 2 0 2 2 2 0 2 4 2 F 1 2 2 F 3 1 2 2 5 B D a t e 2 0 - 2 0 P u b l i c a t i o n 5 D 2 9 2 0 A N D 2 0 E n g l i s h 2 0 5 B L a n g u a g e 5 D & a m p ; r e t m o d e = x m l & a m p ; u s e h i s t o r y = y & a m p ; r e t m a x = 1 5 0 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z </div>
<div class="diags">Client: 130.14.22.147</div>
<div class="diags">Server: eutils101</div>
<div class="diags">Time: Wed Sep 9 21:46:52 EDT 2026</div>
<p>
NOTE: The above is an internal URL which may differ from the one you used to address the page.</p>
<hr/>
<p>Rev. 01/04/08</p>
</body>
</html>
---
Backtrace:
▆
1. └─searchAnalyzeR::search_pubmed(...)
2. └─rentrez::entrez_search(...)
3. └─rentrez:::make_entrez_query(...)
4. └─rentrez:::entrez_check(response)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' failed with diagnostics:
HTTP failure: 500
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN" "http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
<html>
<head>
<title>NCBI/eutils101 - WWW Error 500 Diagnostic</title>
<style type="text/css">
h1.error {color: red; font-size: 40pt}
div.diags {text-indent: 0.5in }
</style>
</head>
<body>
<h1>Server Error</h1>
<p>Your request could not be processed due to a problem on
our Web server. This could be a transient problem, please
try the query again. If it doesn't clear up within a
reasonable period of time, e-mail a short description of your
query and the diagnostic information shown below to:</p>
<p>
pubmed@nlm.nih.gov - for problems with PubMed<br/>
webadmin@ncbi.nlm.nih.gov - for problems with other services<br/>
</p>
<p>Thank you for your assistance. We will try to fix the
problem as soon as possible.
</p>
<hr/>
<p>
Diagnostic Information:</p>
<div class="diags">Error: 500</div>
<div class="diags">URL: h t t p : / / e x t - h t t p - e u t i l s . l i n k e r d . n c b i . n l m . n i h . g o v / e n t r e z / e u t i l s / e s e a r c h . f c g i ? d b = p u b m e d & a m p ; t e r m = 2 8 2 0 2 2 l o n g 2 0 c o v i d 2 2 5 B T i t l e 2 F A b s t r a c t 5 D 2 0 O R 2 0 2 2 p o s t - c o v i d 2 0 s y n d r o m e 2 2 5 B T i t l e 2 F A b s t r a c t 5 D 2 0 O R 2 0 2 2 c o v i d - 1 9 2 0 s e q u e l a e 2 2 5 B T i t l e 2 F A b s t r a c t 5 D 2 0 O R 2 0 2 2 p o s t - a c u t e 2 0 c o v i d - 1 9 2 2 5 B T i t l e 2 F A b s t r a c t 5 D 2 0 O R 2 0 2 2 p e r s i s t e n t 2 0 c o v i d 2 0 s y m p t o m s 2 2 5 B T i t l e 2 F A b s t r a c t 5 D 2 0 2 9 2 0 A N D 2 0 2 8 2 2 2 0 2 0 2 F 0 1 2 F 0 1 2 2 5 B D a t e 2 0 - 2 0 P u b l i c a t i o n 5 D 2 0 3 A 2 0 2 2 2 0 2 4 2 F 1 2 2 F 3 1 2 2 5 B D a t e 2 0 - 2 0 P u b l i c a t i o n 5 D 2 9 2 0 A N D 2 0 E n g l i s h 2 0 5 B L a n g u a g e 5 D & a m p ; r e t m o d e = x m l & a m p ; u s e h i s t o r y = y & a m p ; r e t m a x = 1 5 0 & a m p ; e m a i l = d a v i d . w i n t e r 4 0 g m a i l . c o m & a m p ; t o o l = r e n t r e z </div>
<div class="diags">Client: 130.14.22.147</div>
<div class="diags">Server: eutils101</div>
<div class="diags">Time: Wed Sep 9 21:46:52 EDT 2026</div>
<p>
NOTE: The above is an internal URL which may differ from the one you used to address the page.</p>
<hr/>
<p>Rev. 01/04/08</p>
</body>
</html>
--- failed re-building ‘Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd’
SUMMARY: processing the following file failed:
‘Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang