Last updated on 2026-07-09 14:01:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.7.0 | 3.68 | 378.76 | 382.44 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.7.0 | 3.00 | 248.51 | 251.51 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.7.0 | 649.01 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.7.0 | 850.12 | OK | |||
| r-devel-windows-x86_64 | 1.7.0 | 7.00 | 345.00 | 352.00 | OK | |
| r-patched-linux-x86_64 | 1.7.0 | 3.59 | 345.04 | 348.63 | ERROR | |
| r-release-linux-x86_64 | 1.7.0 | 4.04 | 357.43 | 361.47 | OK | |
| r-release-macos-arm64 | 1.7.0 | 1.00 | 86.00 | 87.00 | OK | |
| r-release-macos-x86_64 | 1.7.0 | 3.00 | 406.00 | 409.00 | OK | |
| r-release-windows-x86_64 | 1.7.0 | 7.00 | 343.00 | 350.00 | OK | |
| r-oldrel-macos-arm64 | 1.7.0 | OK | ||||
| r-oldrel-macos-x86_64 | 1.7.0 | 3.00 | 320.00 | 323.00 | OK | |
| r-oldrel-windows-x86_64 | 1.7.0 | 7.00 | 441.00 | 448.00 | OK |
Version: 1.7.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘concatenation.Rmd’ using rmarkdown
--- finished re-building ‘concatenation.Rmd’
--- re-building ‘conflation.Rmd’ using rmarkdown
--- finished re-building ‘conflation.Rmd’
--- re-building ‘intro.Rmd’ using rmarkdown
--- finished re-building ‘intro.Rmd’
--- re-building ‘l_calibration_mcmctree.Rmd’ using rmarkdown
--- finished re-building ‘l_calibration_mcmctree.Rmd’
--- re-building ‘node_calibration_density.Rmd’ using rmarkdown
--- finished re-building ‘node_calibration_density.Rmd’
--- re-building ‘posterior_tree_distribution.Rmd’ using rmarkdown
Quitting from posterior_tree_distribution.Rmd:16-54 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection to 'https://raw.githubusercontent.com/gaballench/cynodontidaeWare/refs/heads/main/bayesian/mrbayes/concatenatedMolmorph.nexus.run2.t'
---
Backtrace:
▆
1. └─ape::read.nexus(...)
2. └─base::scan(file = file, what = "", sep = "\n", quiet = TRUE)
3. └─base::file(file, "r")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'posterior_tree_distribution.Rmd' failed with diagnostics:
cannot open the connection to 'https://raw.githubusercontent.com/gaballench/cynodontidaeWare/refs/heads/main/bayesian/mrbayes/concatenatedMolmorph.nexus.run2.t'
--- failed re-building ‘posterior_tree_distribution.Rmd’
--- re-building ‘prior_posterior_comparisons.Rmd’ using rmarkdown
--- finished re-building ‘prior_posterior_comparisons.Rmd’
--- re-building ‘starting_tree.Rmd’ using rmarkdown
--- finished re-building ‘starting_tree.Rmd’
--- re-building ‘stratigraphic_intervals.Rmd’ using rmarkdown
--- finished re-building ‘stratigraphic_intervals.Rmd’
--- re-building ‘whyInitVals.Rmd’ using rmarkdown
--- finished re-building ‘whyInitVals.Rmd’
--- re-building ‘x_intercept.Rmd’ using rmarkdown
--- finished re-building ‘x_intercept.Rmd’
SUMMARY: processing the following file failed:
‘posterior_tree_distribution.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64