Last updated on 2026-10-24 12:51:51 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3 | 10.23 | 213.42 | 223.65 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3 | 7.96 | 128.23 | 136.19 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3 | 10.00 | 168.57 | 178.57 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.3 | 153.11 | OK | |||
| r-devel-windows-x86_64 | 0.1.3 | 13.00 | 208.00 | 221.00 | OK | |
| r-patched-linux-x86_64 | 0.1.3 | 9.49 | 200.79 | 210.28 | OK | |
| r-release-linux-x86_64 | 0.1.3 | 9.51 | 202.81 | 212.32 | OK | |
| r-release-macos-arm64 | 0.1.3 | 3.00 | 55.00 | 58.00 | OK | |
| r-release-macos-x86_64 | 0.1.3 | 8.00 | 222.00 | 230.00 | OK | |
| r-release-windows-x86_64 | 0.1.3 | 12.00 | 207.00 | 219.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.3 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.3 | 6.00 | 159.00 | 165.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.3 | 16.00 | 269.00 | 285.00 | OK |
Version: 0.1.3
Check: examples
Result: ERROR
Running examples in ‘tornado-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tornado.coxph
> ### Title: Cox Proportional Hazards Tornado Diagram
> ### Aliases: tornado.coxph
>
> ### ** Examples
>
> gtest <- survival::coxph(survival::Surv(stop, event) ~ rx + size + number,
+ survival::bladder)
> torn <- tornado(gtest, modeldata = survival::bladder, type = "PercentChange",
+ alpha = 0.10)
Error in a$specials[[i]] : subscript out of bounds
Calls: tornado ... .create_plot_data -> predict -> predict.coxph -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [44s/50s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (require(testthat))
+ {
+ library(tornado)
+
+ test_check("tornado")
+ }
Loading required package: testthat
Loading required package: ggplot2
Loading required package: lattice
Saving _problems/test-tornado_coxph-7.R
Saving _problems/test-tornado_coxph-18.R
[ FAIL 2 | WARN 42 | SKIP 0 | PASS 132 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-tornado_coxph.R:6:3'): tornado.coxph works ─────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─tornado::tornado(...) at test-tornado_coxph.R:6:3
2. └─tornado:::tornado.coxph(...)
3. └─tornado:::.create_plot_data(...)
4. ├─stats::predict(model, newdata = means, type = predict_type)
5. └─survival:::predict.coxph(model, newdata = means, type = predict_type)
6. └─stats::delete.response(Terms)
7. └─stats (local) off(a$specials[[i]])
── Error ('test-tornado_coxph.R:17:3'): tornado.coxph works with weights ───────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─tornado::tornado(...) at test-tornado_coxph.R:17:3
2. └─tornado:::tornado.coxph(...)
3. └─tornado:::.create_plot_data(...)
4. ├─stats::predict(model, newdata = means, type = predict_type)
5. └─survival:::predict.coxph(model, newdata = means, type = predict_type)
6. └─stats::delete.response(Terms)
7. └─stats (local) off(a$specials[[i]])
[ FAIL 2 | WARN 42 | SKIP 0 | PASS 132 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘tornadoVignette.Rmd’ using rmarkdown
Quitting from tornadoVignette.Rmd:195-201 [censored2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. ├─tornado::tornado(...)
2. └─tornado:::tornado.coxph(...)
3. └─tornado:::.create_plot_data(...)
4. ├─stats::predict(model, newdata = means, type = predict_type)
5. └─survival:::predict.coxph(model, newdata = means, type = predict_type)
6. └─stats::delete.response(Terms)
7. └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'tornadoVignette.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘tornadoVignette.Rmd’
SUMMARY: processing the following file failed:
‘tornadoVignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc