CACIMAR: Cross-Species Analysis of Cell Identities, Markers and Regulations

A toolkit to perform cross-species analysis based on scRNA-seq data. This package contains 5 main features. (1) identify Markers in each cluster. (2) Cell type annotation (3) identify conserved markers. (4) identify conserved cell types. (5) identify conserved modules of regulatory networks.

Version:	1.0.0
Depends:	R (≥ 4.0), Seurat
Imports:	pheatmap, pbapply, psych, ROCR, reshape2, dplyr, grDevices, stats, methods, viridisLite
Suggests:	knitr, testthat (≥ 3.0.0)
Published:	2022-05-18
Author:	Junyao Jiang
Maintainer:	Junyao Jiang <jiangjunyao789 at 163.com>
BugReports:	https://github.com/jiang-junyao/CACIMAR/issues
License:	MIT + file LICENSE
URL:	https://github.com/jiang-junyao/CACIMAR
NeedsCompilation:	no
CRAN checks:	CACIMAR results

Documentation:

Reference manual:

CACIMAR.pdf

Downloads:

Package source:	CACIMAR_1.0.0.tar.gz
Windows binaries:	r-prerel: CACIMAR_1.0.0.zip, r-release: CACIMAR_1.0.0.zip, r-oldrel: CACIMAR_1.0.0.zip
macOS binaries:	r-prerel (arm64): CACIMAR_1.0.0.tgz, r-release (arm64): CACIMAR_1.0.0.tgz, r-oldrel (arm64): CACIMAR_1.0.0.tgz, r-prerel (x86_64): CACIMAR_1.0.0.tgz, r-release (x86_64): CACIMAR_1.0.0.tgz

Linking:

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