IncidencePrevalence: Estimate Incidence and Prevalence using the OMOP Common Data Model

Calculate incidence and prevalence using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Incidence and prevalence can be estimated for the total population in a database or for a stratification cohort.

Version: 0.9.0
Depends: R (≥ 4.0)
Imports: CDMConnector (≥ 1.3.0), checkmate (≥ 2.0.0), cli (≥ 3.0.0), clock, dbplyr (≥ 2.5.0), dplyr (≥ 1.1.0), glue (≥ 1.5.0), omopgenerics (≥ 0.4.0), magrittr (≥ 2.0.0), PatientProfiles (≥ 1.1.0), purrr (≥ 0.3.5), rlang (≥ 1.0.0), stringr (≥ 1.5.0), tidyr (≥ 1.2.0), lifecycle
Suggests: knitr, rmarkdown, RPostgres, duckdb (≥ 1.0.0), DBI (≥ 1.0.0), odbc, here, Hmisc, epitools, tictoc, testthat (≥ 0.3.1), spelling, gt, flextable, ggplot2 (≥ 3.4.0), scales (≥ 1.1.0), visOmopResults (≥ 0.5.0)
Published: 2024-11-27
DOI: 10.32614/CRAN.package.IncidencePrevalence
Author: Edward Burn ORCID iD [aut, cre], Berta Raventos ORCID iD [aut], Marti Catala ORCID iD [aut], Mike Du ORCID iD [ctb], Yuchen Guo ORCID iD [ctb], Adam Black ORCID iD [ctb], Ger Inberg ORCID iD [ctb], Kim Lopez ORCID iD [ctb]
Maintainer: Edward Burn <edward.burn at ndorms.ox.ac.uk>
License: Apache License (≥ 2)
URL: https://darwin-eu.github.io/IncidencePrevalence/
NeedsCompilation: no
Language: en-US
Materials: README
CRAN checks: IncidencePrevalence results

Documentation:

Reference manual: IncidencePrevalence.pdf
Vignettes: a01_Introduction_to_IncidencePrevalence (source, R code)
a02_Creating_denominator_cohorts (source, R code)
a03_Creating_target_denominator_populations (source, R code)
a04_Calculating_prevalence (source, R code)
a05_Calculating_incidence (source, R code)
a06_Plotting_options (source, R code)

Downloads:

Package source: IncidencePrevalence_0.9.0.tar.gz
Windows binaries: r-devel: IncidencePrevalence_0.9.0.zip, r-release: IncidencePrevalence_0.9.0.zip, r-oldrel: IncidencePrevalence_0.9.0.zip
macOS binaries: r-release (arm64): IncidencePrevalence_0.9.0.tgz, r-oldrel (arm64): IncidencePrevalence_0.9.0.tgz, r-release (x86_64): IncidencePrevalence_0.9.0.tgz, r-oldrel (x86_64): IncidencePrevalence_0.9.0.tgz
Old sources: IncidencePrevalence archive

Reverse dependencies:

Reverse imports: PhenotypeR
Reverse suggests: CohortConstructor, OmopViewer

Linking:

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