MAGEE: Mixed Model Association Test for GEne-Environment Interaction

Use a 'glmmkin' class object (GMMAT package) from the null model to perform generalized linear mixed model-based single-variant and variant set main effect tests, gene-environment interaction tests, and joint tests for association, as proposed in Wang et al. (2020) <doi:10.1002/gepi.22351>.

Version: 1.3.0
Depends: R (≥ 3.2.0)
Imports: Rcpp, Matrix, parallel, MASS, SeqArray, SeqVarTools, foreach, GMMAT, CompQuadForm, data.table
LinkingTo: Rcpp, RcppArmadillo
Suggests: doMC, testthat
Published: 2023-04-18
Author: Xinyu Wang [aut], Han Chen [aut, cre], Duy Pham [aut], Kenneth Westerman [ctb], Cong Pan [aut], Eric Biggers [ctb, cph] (Author and copyright holder of included libdeflate library), Tino Reichardt [ctb, cph] (Author and copyright holder of threading code used in the included Zstandard (zstd) library), Meta Platforms, Inc. and affiliates [cph] (Copyright holder of included Zstandard (zstd) library)
Maintainer: Han Chen <han.chen.2 at>
License: GPL (≥ 3)
Copyright: See COPYRIGHTS for details.
MAGEE copyright details
NeedsCompilation: yes
CRAN checks: MAGEE results


Reference manual: MAGEE.pdf
Vignettes: MAGEE


Package source: MAGEE_1.3.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): MAGEE_1.3.0.tgz, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): MAGEE_1.3.0.tgz


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