Identifying Infection with Machine Intelligence

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Documentation for package ‘iimi’ version 1.2.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

convert_bam_to_rle	convert_bam_to_rle
convert_rle_to_df	Convert run-length encodings (RLEs) to a data frame.
create_high_nucleotide_content	create_high_nucleotide_content
create_mappability_profile	create_mappability_profile
example_cov	Coverage profiles of three plant samples.
example_diag	Known diagnostics result of virus segments
nucleotide_info	Nucleotide information of virus segments
plot_cov	plot_cov()
predict_iimi	predict_iimi()
trained_en	A trained model using the default Elastic Net settings
trained_rf	A trained model using the default Random Forest settings
trained_xgb	A trained model using the default XGBoost settings
train_iimi	train_iimi()
unreliable_regions	The unreliable regions of the virus segments